Wall clock time and date at job start Tue Mar 31 2020 20:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 119.99935 * 2 1 4 4 H 1.48507 * 109.47205 * 239.99683 * 3 2 1 5 5 H 1.48499 * 109.47579 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47263 * 119.99850 * 3 2 1 7 7 C 1.38797 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99458 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00364 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46985 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99988 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00234 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64417 * 359.97438 * 13 11 10 15 15 C 1.54322 * 107.26788 * 178.98629 * 14 13 11 16 16 C 1.55155 * 102.94346 * 337.80688 * 15 14 13 17 17 H 1.09004 * 111.00114 * 277.38937 * 16 15 14 18 18 N 1.46903 * 111.00689 * 153.57704 * 16 15 14 19 19 C 1.46896 * 110.99948 * 154.99815 * 18 16 15 20 20 C 1.53002 * 109.47035 * 180.02562 * 19 18 16 21 21 O 1.42905 * 109.47079 * 64.99813 * 20 19 18 22 22 C 1.42899 * 113.99778 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46889 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.47131 * 299.99725 * 23 22 21 25 25 F 1.39893 * 109.47595 * 60.00214 * 23 22 21 26 26 C 1.47416 * 125.64971 * 180.02562 * 13 11 10 27 27 H 0.97003 * 119.99733 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47031 * 60.00125 * 10 9 7 29 29 H 1.08998 * 109.46924 * 300.00217 * 10 9 7 30 30 H 1.08995 * 109.88291 * 59.56611 * 14 13 11 31 31 H 1.09002 * 110.01134 * 298.47542 * 14 13 11 32 32 H 1.09002 * 110.71909 * 219.44106 * 15 14 13 33 33 H 1.09005 * 110.72219 * 96.17187 * 15 14 13 34 34 H 1.00899 * 110.99761 * 31.04849 * 18 16 15 35 35 H 1.08997 * 109.47137 * 60.00445 * 19 18 16 36 36 H 1.09005 * 109.47283 * 299.99974 * 19 18 16 37 37 H 1.09004 * 109.46930 * 305.00039 * 20 19 18 38 38 H 1.09000 * 109.47312 * 184.99983 * 20 19 18 39 39 H 1.08997 * 109.47442 * 300.00036 * 22 21 20 40 40 H 1.08997 * 109.47171 * 60.00232 * 22 21 20 41 41 H 1.09010 * 109.47076 * 180.02562 * 23 22 21 42 42 H 1.09002 * 110.36878 * 85.24648 * 26 13 11 43 43 H 1.08999 * 110.36961 * 322.92021 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 4.3109 -6.2452 -0.0019 15 6 4.8663 -7.6847 0.0243 16 6 3.6850 -8.5024 0.6102 17 1 3.6718 -8.4447 1.6986 18 7 3.7374 -9.8998 0.1604 19 6 3.0487 -10.7846 1.1095 20 6 3.1249 -12.2282 0.6084 21 8 4.4869 -12.6610 0.6080 22 6 4.6699 -14.0035 0.1539 23 6 6.1577 -14.3577 0.1961 24 9 6.8688 -13.4839 -0.6334 25 9 6.6279 -14.2412 1.5085 26 6 2.4653 -7.7679 -0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8895 29 1 3.1243 -3.7313 -0.8905 30 1 4.6471 -5.7020 0.8812 31 1 4.6496 -5.7335 -0.9028 32 1 5.7396 -7.7495 0.6733 33 1 5.1075 -8.0235 -0.9834 34 1 4.6905 -10.1973 0.0150 35 1 2.0045 -10.4838 1.1945 36 1 3.5280 -10.7135 2.0859 37 1 2.7261 -12.2827 -0.4046 38 1 2.5393 -12.8720 1.2646 39 1 4.1163 -14.6844 0.8004 40 1 4.3033 -14.0944 -0.8685 41 1 6.2975 -15.3817 -0.1507 42 1 2.2857 -8.1127 -1.0186 43 1 1.5803 -7.9253 0.6161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731430875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:41 Heat of formation + Delta-G solvation = -180.126212 kcal Electronic energy + Delta-G solvation = -26071.694827 eV Core-core repulsion = 21720.923435 eV Total energy + Delta-G solvation = -4350.771392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.36467 -47.40155 -39.84552 -38.75012 -37.52401 -35.19767 -32.40852 -31.79774 -30.44924 -29.59970 -28.75052 -26.79959 -25.43715 -23.52164 -23.36687 -22.20957 -20.93604 -19.29254 -18.37964 -17.95838 -17.71513 -17.25339 -16.83391 -16.57716 -16.50482 -16.16687 -15.33477 -15.14160 -14.78695 -14.68726 -14.48323 -14.20339 -13.94587 -13.75911 -13.73339 -13.63380 -13.10704 -12.97624 -12.76416 -12.57475 -12.53007 -12.36598 -12.02938 -11.76594 -11.48879 -11.38910 -11.30790 -11.02394 -11.01851 -10.92468 -10.75057 -10.31488 -9.80434 -9.38122 -9.03805 -8.83820 -8.42795 -8.21189 -6.47797 -6.19305 -3.89896 2.74124 2.91914 3.10847 3.25115 3.27025 3.30601 3.34456 3.59674 3.65400 3.84950 3.92765 4.21063 4.24170 4.34892 4.51865 4.58889 4.67726 4.76709 4.83851 4.84551 4.93923 5.07532 5.14493 5.15894 5.20914 5.36174 5.40740 5.53345 5.57793 5.66517 5.79030 5.82148 5.92226 5.99093 6.17378 6.39710 6.44796 6.70291 7.04224 7.61357 7.72485 8.37258 8.60340 9.25692 10.88088 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.034000 B = 0.001637 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.323390 B =17099.161184 C =17671.423404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.517 6.517 13 N -0.627 5.627 14 C 0.105 3.895 15 C -0.133 4.133 16 C 0.071 3.929 17 H 0.064 0.936 18 N -0.676 5.676 19 C 0.061 3.939 20 C 0.062 3.938 21 O -0.379 6.379 22 C 0.012 3.988 23 C 0.270 3.730 24 F -0.198 7.198 25 F -0.201 7.201 26 C 0.120 3.880 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.354 0.646 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.074 0.926 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.127 -31.685 0.697 34.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.391 6.391 13 N -0.365 5.365 14 C -0.019 4.019 15 C -0.172 4.172 16 C -0.040 4.040 17 H 0.082 0.918 18 N -0.309 5.309 19 C -0.069 4.069 20 C -0.014 4.014 21 O -0.298 6.298 22 C -0.066 4.066 23 C 0.217 3.783 24 F -0.180 7.180 25 F -0.182 7.182 26 C -0.004 4.004 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.174 0.826 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.093 0.907 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.748 -31.591 0.358 33.371 hybrid contribution 2.539 1.114 0.689 2.857 sum 13.287 -30.476 1.048 33.263 Atomic orbital electron populations 1.70013 1.05944 1.27533 1.46801 1.24988 0.95030 0.98995 0.94548 0.86224 0.79232 0.81244 0.78790 1.19940 1.20807 1.19955 1.22825 0.94876 0.91645 1.59027 0.90981 1.85388 1.05011 0.96298 1.96716 1.23506 1.06416 0.94999 1.04793 1.20009 0.85662 0.85432 0.75165 1.90704 1.14938 1.85146 1.48293 1.48444 1.06477 1.05834 1.75726 1.21923 0.80650 0.97016 1.02297 1.22834 0.97450 0.94203 1.02665 1.22694 0.95669 0.87850 0.97775 0.91790 1.60337 1.22659 1.00809 1.47105 1.22058 1.00486 0.90214 0.94124 1.22693 0.82251 0.95142 1.01322 1.87920 1.27417 1.27433 1.87060 1.23634 0.94663 0.86560 1.01772 1.22026 0.88346 0.93931 0.74035 1.93025 1.80445 1.72827 1.71686 1.93014 1.90007 1.97201 1.37970 1.22080 0.96823 0.79914 1.01540 0.92146 0.89338 0.89277 0.91281 0.91044 0.90054 0.89529 0.82642 0.89028 0.94002 0.91667 0.92391 0.90287 0.90017 0.85971 0.90736 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.10 5.35 36.00 0.19 -2.91 16 11 C 0.55 11.05 7.87 -10.99 -0.09 10.96 16 12 O -0.52 -12.41 16.12 5.56 0.09 -12.32 16 13 N -0.63 -9.56 3.33 -170.53 -0.57 -10.12 16 14 C 0.11 1.19 6.49 -3.06 -0.02 1.17 16 15 C -0.13 -1.15 6.35 -24.90 -0.16 -1.31 16 16 C 0.07 0.68 3.38 -65.56 -0.22 0.46 16 17 H 0.06 0.63 7.83 -51.93 -0.41 0.22 16 18 N -0.68 -5.70 6.41 -104.46 -0.67 -6.37 16 19 C 0.06 0.44 5.97 -3.82 -0.02 0.42 16 20 C 0.06 0.37 6.28 37.16 0.23 0.60 16 21 O -0.38 -2.75 9.75 -35.23 -0.34 -3.10 16 22 C 0.01 0.05 6.16 37.16 0.23 0.28 16 23 C 0.27 1.27 5.63 37.16 0.21 1.48 16 24 F -0.20 -1.55 17.28 2.25 0.04 -1.51 16 25 F -0.20 -1.56 17.28 2.25 0.04 -1.52 16 26 C 0.12 1.56 6.60 -2.53 -0.02 1.54 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 29 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.35 2.93 8.00 -39.29 -0.31 2.62 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.12 0.06 8.14 -51.92 -0.42 -0.37 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -36.63 383.81 -8.19 -44.82 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.60 Total: -2.19 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 0.54 Total: -0.47 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.50 Total: -42.18 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.25 Total: -15.42 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.63 -8.19 -44.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731430875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.302 kcal (2) G-P(sol) polarization free energy of solvation -36.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds