Wall clock time and date at job start Tue Mar 31 2020 20:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 119.99935 * 2 1 4 4 H 1.48507 * 109.47205 * 239.99683 * 3 2 1 5 5 H 1.48499 * 109.47579 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47263 * 119.99850 * 3 2 1 7 7 C 1.38797 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99458 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00364 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46985 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99988 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00234 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64417 * 359.97438 * 13 11 10 15 15 C 1.54322 * 107.26788 * 178.98629 * 14 13 11 16 16 C 1.55155 * 102.94346 * 337.80688 * 15 14 13 17 17 H 1.09004 * 111.00114 * 277.38937 * 16 15 14 18 18 N 1.46903 * 111.00689 * 153.57704 * 16 15 14 19 19 C 1.46896 * 110.99948 * 154.99815 * 18 16 15 20 20 C 1.53002 * 109.47035 * 180.02562 * 19 18 16 21 21 O 1.42905 * 109.47079 * 64.99813 * 20 19 18 22 22 C 1.42899 * 113.99778 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46889 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.47131 * 299.99725 * 23 22 21 25 25 F 1.39893 * 109.47595 * 60.00214 * 23 22 21 26 26 C 1.47416 * 125.64971 * 180.02562 * 13 11 10 27 27 H 0.97003 * 119.99733 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47031 * 60.00125 * 10 9 7 29 29 H 1.08998 * 109.46924 * 300.00217 * 10 9 7 30 30 H 1.08995 * 109.88291 * 59.56611 * 14 13 11 31 31 H 1.09002 * 110.01134 * 298.47542 * 14 13 11 32 32 H 1.09002 * 110.71909 * 219.44106 * 15 14 13 33 33 H 1.09005 * 110.72219 * 96.17187 * 15 14 13 34 34 H 1.00899 * 110.99761 * 31.04849 * 18 16 15 35 35 H 1.08997 * 109.47137 * 60.00445 * 19 18 16 36 36 H 1.09005 * 109.47283 * 299.99974 * 19 18 16 37 37 H 1.09004 * 109.46930 * 305.00039 * 20 19 18 38 38 H 1.09000 * 109.47312 * 184.99983 * 20 19 18 39 39 H 1.08997 * 109.47442 * 300.00036 * 22 21 20 40 40 H 1.08997 * 109.47171 * 60.00232 * 22 21 20 41 41 H 1.09010 * 109.47076 * 180.02562 * 23 22 21 42 42 H 1.09002 * 110.36878 * 85.24648 * 26 13 11 43 43 H 1.08999 * 110.36961 * 322.92021 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 4.3109 -6.2452 -0.0019 15 6 4.8663 -7.6847 0.0243 16 6 3.6850 -8.5024 0.6102 17 1 3.6718 -8.4447 1.6986 18 7 3.7374 -9.8998 0.1604 19 6 3.0487 -10.7846 1.1095 20 6 3.1249 -12.2282 0.6084 21 8 4.4869 -12.6610 0.6080 22 6 4.6699 -14.0035 0.1539 23 6 6.1577 -14.3577 0.1961 24 9 6.8688 -13.4839 -0.6334 25 9 6.6279 -14.2412 1.5085 26 6 2.4653 -7.7679 -0.0003 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8895 29 1 3.1243 -3.7313 -0.8905 30 1 4.6471 -5.7020 0.8812 31 1 4.6496 -5.7335 -0.9028 32 1 5.7396 -7.7495 0.6733 33 1 5.1075 -8.0235 -0.9834 34 1 4.6905 -10.1973 0.0150 35 1 2.0045 -10.4838 1.1945 36 1 3.5280 -10.7135 2.0859 37 1 2.7261 -12.2827 -0.4046 38 1 2.5393 -12.8720 1.2646 39 1 4.1163 -14.6844 0.8004 40 1 4.3033 -14.0944 -0.8685 41 1 6.2975 -15.3817 -0.1507 42 1 2.2857 -8.1127 -1.0186 43 1 1.5803 -7.9253 0.6161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731430875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:40 Heat of formation + Delta-G solvation = -207.096578 kcal Electronic energy + Delta-G solvation = -26072.864349 eV Core-core repulsion = 21720.923435 eV Total energy + Delta-G solvation = -4351.940915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.80407 -47.86915 -41.08882 -39.35657 -38.62397 -36.06849 -34.59198 -32.74022 -31.16030 -30.81866 -29.55301 -27.90876 -27.48096 -24.38441 -23.81270 -22.85043 -21.80096 -20.71821 -19.60614 -18.75473 -18.37272 -18.11206 -17.74592 -17.62478 -17.01194 -16.88681 -16.76114 -16.61078 -16.17493 -15.78046 -15.57918 -15.24168 -14.74409 -14.68978 -14.56801 -14.30382 -14.25077 -14.22787 -13.82724 -13.49170 -13.42356 -13.19168 -13.16289 -12.99049 -12.86695 -12.69266 -12.63352 -12.12815 -12.09312 -11.77067 -11.74430 -11.69266 -11.13243 -11.01678 -10.70287 -10.30178 -9.75255 -9.48930 -8.69211 -8.34854 -6.14092 1.22483 1.44029 1.44171 1.53267 1.54773 2.04491 2.26989 2.42311 2.99063 3.03010 3.09243 3.20591 3.42573 3.45084 3.63936 3.64532 3.87853 4.01055 4.07357 4.17027 4.20644 4.29337 4.31214 4.39467 4.42531 4.43537 4.50752 4.59210 4.63716 4.75844 4.80917 4.81519 4.92301 4.94949 5.12317 5.30229 5.40855 5.94722 6.06585 6.19109 6.32966 6.42706 7.05803 7.08074 8.74266 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.034000 B = 0.001637 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.323390 B =17099.161184 C =17671.423404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.119 4.119 11 C 0.546 3.454 12 O -0.568 6.568 13 N -0.618 5.618 14 C 0.093 3.907 15 C -0.120 4.120 16 C 0.083 3.917 17 H 0.065 0.935 18 N -0.676 5.676 19 C 0.058 3.942 20 C 0.067 3.933 21 O -0.405 6.405 22 C 0.006 3.994 23 C 0.259 3.741 24 F -0.220 7.220 25 F -0.222 7.222 26 C 0.117 3.883 27 H 0.272 0.728 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.358 0.642 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.169 0.831 42 H 0.071 0.929 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.853 -32.781 0.610 36.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.270 4.270 11 C 0.334 3.666 12 O -0.447 6.447 13 N -0.353 5.353 14 C -0.029 4.029 15 C -0.158 4.158 16 C -0.028 4.028 17 H 0.083 0.917 18 N -0.310 5.310 19 C -0.071 4.071 20 C -0.010 4.010 21 O -0.325 6.325 22 C -0.071 4.071 23 C 0.206 3.794 24 F -0.201 7.201 25 F -0.203 7.203 26 C -0.007 4.007 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.178 0.822 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.186 0.814 42 H 0.090 0.910 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.534 -32.742 0.270 35.430 hybrid contribution 1.731 1.273 0.703 2.261 sum 15.265 -31.469 0.973 34.989 Atomic orbital electron populations 1.70184 1.07999 1.28714 1.47832 1.26149 0.95990 1.03343 0.93639 0.84985 0.77796 0.75558 0.79529 1.18618 1.20313 1.18607 1.23166 0.95359 0.91860 1.59159 0.89864 1.85584 1.10482 0.99252 1.97049 1.23299 1.03446 0.93864 1.06431 1.19798 0.85425 0.86011 0.75379 1.90681 1.17087 1.85787 1.51156 1.48388 1.08001 1.05718 1.73175 1.22300 0.77880 0.99376 1.03350 1.22822 0.97490 0.91739 1.03746 1.22511 0.94245 0.88492 0.97548 0.91670 1.60263 1.22989 1.00240 1.47484 1.22107 1.00116 0.91076 0.93815 1.22653 0.82213 0.94383 1.01710 1.87875 1.27896 1.29249 1.87499 1.23871 0.94522 0.85543 1.03174 1.22706 0.88266 0.95658 0.72770 1.92976 1.81042 1.73868 1.72244 1.92967 1.90322 1.97375 1.39647 1.22224 0.98089 0.78932 1.01420 0.91951 0.87481 0.87500 0.90148 0.90059 0.87497 0.88672 0.82158 0.89276 0.94320 0.91513 0.90757 0.88233 0.88376 0.81428 0.91027 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.55 -31.80 9.50 67.95 0.65 -31.16 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 10 C -0.12 -5.02 5.35 71.23 0.38 -4.64 16 11 C 0.55 22.18 7.87 87.66 0.69 22.87 16 12 O -0.57 -28.41 16.12 -3.03 -0.05 -28.46 16 13 N -0.62 -18.32 3.33 -811.82 -2.70 -21.02 16 14 C 0.09 1.88 6.49 86.73 0.56 2.44 16 15 C -0.12 -1.71 6.35 31.78 0.20 -1.50 16 16 C 0.08 1.45 3.38 46.31 0.16 1.61 16 17 H 0.07 1.16 7.83 -2.38 -0.02 1.14 16 18 N -0.68 -10.31 6.41 -484.41 -3.11 -13.42 16 19 C 0.06 0.77 5.97 86.30 0.52 1.29 16 20 C 0.07 0.68 6.28 71.98 0.45 1.13 16 21 O -0.41 -5.21 9.75 -148.98 -1.45 -6.66 16 22 C 0.01 0.04 6.16 71.98 0.44 0.48 16 23 C 0.26 1.93 5.63 71.98 0.41 2.34 16 24 F -0.22 -3.18 17.28 44.97 0.78 -2.40 16 25 F -0.22 -3.19 17.28 44.97 0.78 -2.42 16 26 C 0.12 2.98 6.60 86.86 0.57 3.55 16 27 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 28 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 29 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.36 5.19 8.00 -89.69 -0.72 4.47 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 0.55 8.09 -2.38 -0.02 0.53 16 37 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.17 -0.35 8.14 -2.38 -0.02 -0.37 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 1.62 8.04 -2.39 -0.02 1.60 16 Total: -1.00 -82.94 383.81 1.19 -81.75 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.30 Total: 13.14 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 5.49 Total: -0.35 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -5.52 Total: -90.76 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.50 Total: -35.12 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 1.55 Total: -4.81 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -82.94 1.19 -81.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731430875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.351 kcal (2) G-P(sol) polarization free energy of solvation -82.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds