Wall clock time and date at job start Tue Mar 31 2020 21:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38227 * 120.01020 * 2 1 4 4 C 1.38219 * 120.02402 * 180.30126 * 3 2 1 5 5 C 1.38271 * 120.05287 * 359.44048 * 4 3 2 6 6 C 1.50698 * 119.99018 * 180.27975 * 5 4 3 7 7 N 1.46897 * 109.47305 * 270.27762 * 6 5 4 8 8 C 1.47475 * 111.00264 * 265.97168 * 7 6 5 9 9 C 1.53510 * 87.93281 * 221.29572 * 8 7 6 10 10 N 1.46498 * 114.16934 * 272.37316 * 9 8 7 11 11 C 1.34784 * 120.00052 * 248.84590 * 10 9 8 12 12 O 1.21283 * 119.99846 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.99888 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.47211 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00265 * 180.02562 * 14 13 11 16 16 H 1.08008 * 120.00047 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00311 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00155 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46997 * 120.00112 * 19 17 15 22 22 H 1.48496 * 109.47162 * 239.99855 * 19 17 15 23 23 C 1.47477 * 111.00176 * 169.99590 * 7 6 5 24 24 C 1.38173 * 120.02098 * 0.55595 * 5 4 3 25 25 C 1.38435 * 120.01579 * 180.02562 * 2 1 3 26 26 F 1.35097 * 120.02386 * 359.97438 * 25 2 1 27 27 H 1.09001 * 109.47237 * 90.00505 * 1 2 3 28 28 H 1.09002 * 109.47180 * 210.00303 * 1 2 3 29 29 H 1.08999 * 109.47311 * 330.00254 * 1 2 3 30 30 H 1.08002 * 119.98464 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.97200 * 179.72235 * 4 3 2 32 32 H 1.09004 * 109.46551 * 30.27818 * 6 5 4 33 33 H 1.09000 * 109.47350 * 150.27737 * 6 5 4 34 34 H 1.09005 * 113.47477 * 336.06290 * 8 7 6 35 35 H 1.09004 * 113.47932 * 106.52226 * 8 7 6 36 36 H 1.09000 * 114.34031 * 139.68603 * 9 8 7 37 37 H 0.96998 * 120.00116 * 68.84043 * 10 9 8 38 38 H 1.08997 * 109.47451 * 299.99733 * 13 11 10 39 39 H 1.09001 * 109.47489 * 59.99643 * 13 11 10 40 40 H 0.97007 * 120.00016 * 180.02562 * 18 17 15 41 41 H 1.08994 * 113.47909 * 253.46723 * 23 7 6 42 42 H 1.08996 * 113.47400 * 23.94078 * 23 7 6 43 43 H 1.08004 * 120.01081 * 179.70168 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1973 -0.0063 5 6 4.2733 0.0007 -0.0009 6 6 5.7803 0.0027 -0.0014 7 7 6.2695 0.0036 -1.3865 8 6 6.5386 -1.3693 -1.8529 9 6 7.8111 -0.8327 -2.5232 10 7 7.6057 -0.3283 -3.8832 11 6 8.1282 -0.9913 -4.9340 12 8 8.7689 -2.0051 -4.7535 13 6 7.9173 -0.4721 -6.3328 14 16 8.7353 -1.5724 -7.5145 15 6 8.3394 -0.7510 -9.0222 16 1 7.7521 0.1553 -9.0053 17 6 8.7822 -1.2686 -10.2315 18 7 9.4976 -2.3733 -10.2521 19 14 8.3619 -0.3981 -11.8300 20 1 7.5534 0.8124 -11.5366 21 1 9.6146 -0.0005 -12.5213 22 1 7.5842 -1.3139 -12.7027 23 6 7.7237 0.2448 -1.4333 24 6 3.5843 -1.1970 -0.0008 25 6 2.1995 -1.1987 -0.0005 26 9 1.5248 -2.3691 -0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6583 2.1322 0.0004 31 1 4.1198 2.1330 -0.0108 32 1 6.1425 0.8932 0.5125 33 1 6.1450 -0.8868 0.5122 34 1 6.7374 -2.0718 -1.0434 35 1 5.7979 -1.7403 -2.5614 36 1 8.6769 -1.4889 -2.4338 37 1 7.0935 0.4827 -4.0275 38 1 6.8497 -0.4349 -6.5495 39 1 8.3400 0.5291 -6.4165 40 1 9.8074 -2.7349 -11.0973 41 1 7.9874 1.2417 -1.7862 42 1 8.2387 -0.0269 -0.5119 43 1 4.1256 -2.1316 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732094628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:03 Heat of formation + Delta-G solvation = -47.187030 kcal Electronic energy + Delta-G solvation = -25282.835877 eV Core-core repulsion = 21368.598386 eV Total energy + Delta-G solvation = -3914.237492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.93315 -41.72641 -40.29574 -39.60330 -35.38849 -34.58325 -34.15983 -31.56515 -31.41143 -30.07696 -27.73208 -27.37075 -26.91958 -24.53924 -23.78025 -22.15731 -21.93633 -20.77971 -19.82854 -18.28726 -17.85463 -17.58769 -17.30562 -16.88722 -16.86387 -16.66745 -16.57927 -16.26664 -16.11611 -15.52293 -15.42561 -14.82536 -14.64827 -14.36857 -14.34410 -14.21339 -13.93675 -13.58492 -13.48418 -13.29723 -13.15599 -12.99064 -12.91206 -12.60110 -12.58449 -12.39545 -12.23778 -11.86041 -11.76836 -11.67566 -11.15593 -10.97574 -10.27236 -10.11443 -9.94401 -9.80646 -9.47414 -8.66128 -8.34655 -6.12347 0.16399 0.24346 1.26985 1.41657 1.47027 1.58114 1.58752 2.22697 2.28317 2.52813 2.99551 3.08473 3.27751 3.32492 3.46186 3.70418 3.73366 3.84499 3.92628 3.96372 4.10635 4.23119 4.31050 4.34534 4.39977 4.49684 4.51952 4.59799 4.65623 4.68230 4.70979 4.81891 4.84165 4.86251 5.06433 5.08449 5.20247 5.28172 5.41338 5.42574 5.52641 5.57073 5.93701 5.99766 6.20405 6.52305 7.06891 7.24731 8.74783 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.002013 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.763221 B =13905.635548 C =14856.757884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.131 4.131 3 C -0.095 4.095 4 C -0.107 4.107 5 C -0.056 4.056 6 C 0.057 3.943 7 N -0.471 5.471 8 C -0.013 4.013 9 C 0.105 3.895 10 N -0.688 5.688 11 C 0.538 3.462 12 O -0.564 6.564 13 C -0.129 4.129 14 S -0.150 6.150 15 C -0.545 4.545 16 H 0.082 0.918 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.274 1.274 23 C 0.008 3.992 24 C -0.153 4.153 25 C 0.066 3.934 26 F -0.153 7.153 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.417 0.583 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.303 11.790 27.121 32.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.132 4.132 3 C -0.113 4.113 4 C -0.126 4.126 5 C -0.057 4.057 6 C -0.070 4.070 7 N -0.193 5.193 8 C -0.143 4.143 9 C -0.001 4.001 10 N -0.341 5.341 11 C 0.324 3.676 12 O -0.442 6.442 13 C -0.280 4.280 14 S 0.077 5.923 15 C -0.693 4.693 16 H 0.100 0.900 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.200 1.200 23 C -0.121 4.121 24 C -0.173 4.173 25 C 0.047 3.953 26 F -0.132 7.132 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.255 0.745 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.665 10.401 27.015 32.011 hybrid contribution -0.730 0.422 -0.884 1.222 sum -14.395 10.823 26.131 31.736 Atomic orbital electron populations 1.20777 0.89162 1.03940 1.03223 1.20268 0.98094 0.91994 1.02853 1.21258 0.94356 0.97455 0.98205 1.21377 0.94145 0.98428 0.98610 1.19654 0.95901 0.92088 0.98063 1.21723 0.90440 1.04042 0.90822 1.68968 1.14646 1.16346 1.19347 1.24458 0.97232 0.92621 1.00029 1.22036 0.98466 0.97997 0.81634 1.45292 1.55160 1.29325 1.04311 1.20045 0.77915 0.83192 0.86425 1.90686 1.41345 1.26100 1.86093 1.23359 1.05711 1.04473 0.94503 1.85546 1.70593 1.36591 0.99533 1.23234 1.39884 1.13713 0.92454 0.89966 1.26136 0.94213 0.95763 1.03146 1.70190 1.35170 1.21302 1.28109 0.84897 0.78311 0.78327 0.76364 1.18056 1.19848 1.19990 1.24245 0.89235 1.00554 0.98033 1.21136 0.92107 1.00043 1.03967 1.17849 0.90544 0.81172 1.05783 1.91440 1.80644 1.46844 1.94255 0.90570 0.91935 0.88886 0.82521 0.83213 0.87360 0.91432 0.88673 0.91444 0.88573 0.74538 0.87558 0.87077 0.92000 0.87831 0.87437 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.84 71.24 0.70 -0.69 16 2 C -0.13 -2.11 5.89 -19.82 -0.12 -2.23 16 3 C -0.09 -1.18 9.70 22.26 0.22 -0.96 16 4 C -0.11 -1.33 9.70 22.27 0.22 -1.11 16 5 C -0.06 -0.82 5.46 -19.87 -0.11 -0.93 16 6 C 0.06 0.63 4.94 85.56 0.42 1.05 16 7 N -0.47 -6.80 6.32 -932.59 -5.89 -12.69 16 8 C -0.01 -0.24 7.52 83.57 0.63 0.39 16 9 C 0.11 2.17 4.60 45.45 0.21 2.38 16 10 N -0.69 -17.30 5.39 -441.70 -2.38 -19.68 16 11 C 0.54 19.70 7.85 87.65 0.69 20.39 16 12 O -0.56 -25.80 15.46 -3.04 -0.05 -25.84 16 13 C -0.13 -5.14 6.16 71.23 0.44 -4.71 16 14 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 15 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 16 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 17 C 0.01 0.69 5.49 84.86 0.47 1.16 16 18 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 19 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.01 0.10 7.45 83.57 0.62 0.72 16 24 C -0.15 -2.76 9.68 22.31 0.22 -2.54 16 25 C 0.07 1.31 7.24 22.37 0.16 1.47 16 26 F -0.15 -3.50 16.48 44.97 0.74 -2.76 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.83 7.64 -2.39 -0.02 0.81 16 29 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 30 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.11 0.76 8.03 -2.38 -0.02 0.74 16 33 H 0.07 0.64 7.24 -2.39 -0.02 0.62 16 34 H 0.10 1.40 7.42 -2.38 -0.02 1.38 16 35 H 0.07 1.56 8.14 -2.38 -0.02 1.55 16 36 H 0.10 2.34 7.45 -2.39 -0.02 2.32 16 37 H 0.42 8.38 8.76 -92.71 -0.81 7.57 16 38 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 39 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 40 H 0.27 15.46 8.31 -92.70 -0.77 14.68 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 0.84 7.91 -2.39 -0.02 0.82 16 43 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -77.92 382.85 -0.80 -78.72 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.22 Total: 18.06 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.41 Total: -16.24 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -7.98 Total: -88.28 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.74 Total: -2.76 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -77.92 -0.80 -78.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732094628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.531 kcal (2) G-P(sol) polarization free energy of solvation -77.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds