Wall clock time and date at job start Tue Mar 31 2020 20:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00181 * 2 1 4 4 H 1.48499 * 109.47065 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.46979 * 29.99620 * 3 2 1 6 6 H 1.48495 * 109.47100 * 149.99756 * 3 2 1 7 7 C 1.38799 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00365 * 0.02562 * 7 2 1 9 9 S 1.76197 * 119.99738 * 180.02562 * 7 2 1 10 10 C 1.81009 * 99.99920 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47043 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99688 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99662 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46859 * 180.02562 * 14 13 11 16 16 C 1.31003 * 120.00087 * 127.00508 * 15 14 13 17 17 C 1.50698 * 119.99544 * 7.55567 * 16 15 14 18 18 N 1.46904 * 109.46736 * 127.15908 * 17 16 15 19 19 C 1.46905 * 110.99877 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.46938 * 179.97438 * 19 18 17 21 21 C 1.38241 * 119.97155 * 269.72047 * 20 19 18 22 22 C 1.38203 * 120.02313 * 179.72756 * 21 20 19 23 23 C 1.38457 * 119.96931 * 0.57065 * 22 21 20 24 24 F 1.35111 * 120.02095 * 179.68499 * 23 22 21 25 25 C 1.38450 * 119.95330 * 359.70540 * 23 22 21 26 26 C 1.38196 * 119.97656 * 359.97438 * 25 23 22 27 27 H 0.97001 * 119.99821 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46980 * 60.00076 * 10 9 7 29 29 H 1.09001 * 109.46868 * 299.99780 * 10 9 7 30 30 H 0.96998 * 120.00544 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.47364 * 60.00032 * 14 13 11 32 32 H 1.09005 * 109.46614 * 299.99834 * 14 13 11 33 33 H 1.08001 * 120.00146 * 307.00399 * 15 14 13 34 34 H 1.07998 * 119.99687 * 187.55524 * 16 15 14 35 35 H 1.08995 * 109.47662 * 7.15901 * 17 16 15 36 36 H 1.09002 * 109.47337 * 247.15352 * 17 16 15 37 37 H 1.00903 * 111.00064 * 56.04250 * 18 17 16 38 38 H 1.09002 * 109.46687 * 299.99456 * 19 18 17 39 39 H 1.08998 * 109.47193 * 59.99538 * 19 18 17 40 40 H 1.08001 * 119.98909 * 359.97438 * 21 20 19 41 41 H 1.07999 * 120.01214 * 180.25659 * 22 21 20 42 42 H 1.08007 * 120.01203 * 179.97438 * 25 23 22 43 43 H 1.07999 * 119.99269 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5730 -3.2327 0.0039 12 8 6.3440 -2.2965 0.0045 13 7 6.0456 -4.4948 0.0045 14 6 7.4907 -4.7359 0.0064 15 6 7.7523 -6.2200 0.0061 16 6 8.5397 -6.7462 -0.8990 17 6 9.3171 -5.8537 -1.8319 18 7 10.7396 -6.2178 -1.7857 19 6 11.5301 -5.3670 -2.6853 20 6 12.9808 -5.7687 -2.6106 21 6 13.8177 -5.1660 -1.6901 22 6 15.1468 -5.5375 -1.6168 23 6 15.6427 -6.5053 -2.4739 24 9 16.9434 -6.8648 -2.4074 25 6 14.8049 -7.1041 -3.3992 26 6 13.4746 -6.7358 -3.4662 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4323 -0.8873 29 1 3.6433 -3.4311 0.8927 30 1 5.4290 -5.2436 0.0037 31 1 7.9325 -4.2889 0.8970 32 1 7.9347 -4.2889 -0.8830 33 1 7.2906 -6.8499 0.7521 34 1 8.6318 -7.8194 -0.9765 35 1 9.1978 -4.8149 -1.5245 36 1 8.9433 -5.9771 -2.8484 37 1 10.8702 -7.1941 -2.0041 38 1 11.1716 -5.4876 -3.7076 39 1 11.4261 -4.3246 -2.3843 40 1 13.4318 -4.4074 -1.0252 41 1 15.7995 -5.0695 -0.8948 42 1 15.1908 -7.8589 -4.0685 43 1 12.8209 -7.2024 -4.1882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754096293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:34 Heat of formation + Delta-G solvation = -37.381395 kcal Electronic energy + Delta-G solvation = -24062.752015 eV Core-core repulsion = 20148.939727 eV Total energy + Delta-G solvation = -3913.812288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.31649 -39.75380 -39.34616 -37.45555 -35.41702 -33.32619 -32.44381 -31.62332 -31.21036 -29.60142 -26.99882 -25.69229 -25.26964 -24.03796 -23.52919 -21.79231 -20.52425 -19.29220 -18.13054 -17.78925 -16.97239 -16.73252 -16.53671 -16.13901 -16.02164 -15.65000 -15.50373 -15.07196 -14.99069 -14.73479 -14.46373 -14.07803 -13.88854 -13.80578 -13.62710 -13.20473 -13.07637 -12.85727 -12.78242 -12.65831 -12.27437 -11.93581 -11.78539 -11.46966 -11.27449 -11.03008 -11.00197 -10.61499 -9.93710 -9.82500 -9.59508 -9.46832 -9.13350 -9.01584 -8.94900 -8.74829 -8.50814 -6.92518 -6.29558 -4.01356 0.61334 0.75233 1.67032 2.80573 2.96409 3.05099 3.32042 3.39216 3.50198 3.71707 3.79661 3.93209 4.20274 4.28164 4.32667 4.38643 4.44052 4.64090 4.71021 4.75363 4.77081 4.90899 5.04920 5.09544 5.09953 5.16905 5.27587 5.37573 5.43159 5.52589 5.55142 5.63859 5.69414 5.74286 5.76358 6.00741 6.02920 6.17755 6.32973 6.38383 6.47563 6.56354 6.86447 7.60729 7.93503 8.40965 8.47692 9.16661 10.79669 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023862 B = 0.001457 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.114770 B =19208.188589 C =19922.426419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.733 5.733 14 C 0.141 3.859 15 C -0.160 4.160 16 C -0.135 4.135 17 C 0.071 3.929 18 N -0.678 5.678 19 C 0.096 3.904 20 C -0.093 4.093 21 C -0.066 4.066 22 C -0.154 4.154 23 C 0.096 3.904 24 F -0.141 7.141 25 C -0.155 4.155 26 C -0.085 4.085 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.400 0.600 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.341 0.659 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.522 -18.710 -5.795 33.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.388 5.388 14 C 0.017 3.983 15 C -0.179 4.179 16 C -0.155 4.155 17 C -0.057 4.057 18 N -0.309 5.309 19 C -0.032 4.032 20 C -0.093 4.093 21 C -0.085 4.085 22 C -0.173 4.173 23 C 0.077 3.923 24 F -0.120 7.120 25 C -0.174 4.174 26 C -0.104 4.104 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.234 0.766 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.159 0.841 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 28.812 -16.642 -5.241 33.683 hybrid contribution -1.089 -1.304 -0.823 1.888 sum 27.723 -17.946 -6.064 33.577 Atomic orbital electron populations 1.69942 1.05918 1.27762 1.48075 1.24711 0.94446 0.98958 0.93163 0.86734 0.81910 0.83277 0.79923 1.19224 1.19932 1.15911 1.22321 0.88283 0.97546 1.58794 0.89387 1.84787 1.09269 1.00081 1.97432 1.23282 0.93969 1.04369 1.05844 1.20299 0.90609 0.82244 0.75261 1.90699 1.58775 1.42203 1.47820 1.45944 1.07171 1.08050 1.77599 1.20432 0.81916 0.92972 1.02934 1.22862 1.00724 0.95981 0.98336 1.22663 0.97328 0.99443 0.96031 1.21285 0.86682 1.00229 0.97535 1.60537 1.07208 1.08074 1.55086 1.20910 0.88690 0.98617 0.95027 1.19842 0.95702 0.97246 0.96530 1.20970 0.91933 0.98771 0.96826 1.21207 0.97040 0.98578 1.00459 1.17774 0.78591 0.97591 0.98338 1.91509 1.33948 1.90837 1.95706 1.21114 0.94155 1.02207 0.99901 1.20927 0.94533 0.96386 0.98543 0.91945 0.88484 0.88416 0.76584 0.90805 0.90524 0.86236 0.86748 0.88968 0.94045 0.84085 0.93866 0.89492 0.84607 0.84617 0.84772 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.70 27.74 -169.99 -4.72 16.98 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 10 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 11 C 0.53 9.23 7.85 -10.98 -0.09 9.15 16 12 O -0.52 -11.08 15.86 5.56 0.09 -10.99 16 13 N -0.73 -9.03 5.55 -61.47 -0.34 -9.37 16 14 C 0.14 1.51 5.76 -5.19 -0.03 1.48 16 15 C -0.16 -1.24 9.63 -36.03 -0.35 -1.59 16 16 C -0.14 -0.93 9.77 -36.03 -0.35 -1.28 16 17 C 0.07 0.50 5.77 -4.97 -0.03 0.47 16 18 N -0.68 -4.42 6.48 -116.33 -0.75 -5.17 16 19 C 0.10 0.58 5.81 -4.97 -0.03 0.55 16 20 C -0.09 -0.58 5.39 -104.62 -0.56 -1.15 16 21 C -0.07 -0.44 9.70 -39.59 -0.38 -0.82 16 22 C -0.15 -1.06 10.03 -39.51 -0.40 -1.46 16 23 C 0.10 0.74 7.30 -39.42 -0.29 0.45 16 24 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 25 C -0.15 -0.98 10.03 -39.52 -0.40 -1.38 16 26 C -0.09 -0.48 9.70 -39.59 -0.38 -0.86 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.40 3.79 8.46 -40.82 -0.35 3.44 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.86 5.29 -51.93 -0.27 0.59 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.09 0.78 5.30 -51.93 -0.28 0.50 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.34 1.86 8.71 -39.29 -0.34 1.52 16 38 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 39 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -34.21 385.99 -9.82 -44.03 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.88 Total: 1.70 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.85 Total: -10.54 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.32 Total: -40.23 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.72 Total: 16.98 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.21 -9.82 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754096293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.646 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds