Wall clock time and date at job start Tue Mar 31 2020 22:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47028 * 2 1 4 4 C 1.36000 * 116.99707 * 180.02562 * 3 2 1 5 5 C 1.38087 * 120.00260 * 0.02562 * 4 3 2 6 6 C 1.39831 * 119.84688 * 180.02562 * 5 4 3 7 7 C 1.47431 * 120.08180 * 179.97438 * 6 5 4 8 8 O 1.21507 * 120.00391 * 114.23567 * 7 6 5 9 9 N 1.34781 * 120.00007 * 293.96323 * 7 6 5 10 10 C 1.33300 * 120.00091 * 184.82762 * 9 7 6 11 11 H 1.08001 * 120.00203 * 351.84894 * 10 9 7 12 12 C 1.46788 * 119.99827 * 171.84906 * 10 9 7 13 13 N 1.29311 * 120.00068 * 1.71277 * 12 10 9 14 14 Si 1.86807 * 119.99788 * 181.70820 * 12 10 9 15 15 H 1.48495 * 109.46915 * 60.00465 * 14 12 10 16 16 H 1.48505 * 109.46969 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47152 * 300.00314 * 14 12 10 18 18 C 1.46500 * 119.99717 * 4.82652 * 9 7 6 19 19 C 1.53004 * 109.47247 * 262.92084 * 18 9 7 20 20 C 1.39823 * 119.84241 * 0.25034 * 6 5 4 21 21 N 1.48016 * 120.00137 * 179.72972 * 20 6 5 22 22 O 1.31701 * 120.00058 * 183.20676 * 21 20 6 23 23 O 1.31706 * 120.00236 * 3.20607 * 21 20 6 24 24 C 1.37735 * 119.99253 * 359.51279 * 20 6 5 25 25 C 1.38876 * 120.15952 * 0.49025 * 24 20 6 26 26 O 1.35780 * 119.92287 * 179.76509 * 25 24 20 27 27 C 1.42897 * 116.99992 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47037 * 299.99352 * 1 2 3 30 30 H 1.08997 * 109.47881 * 59.99430 * 1 2 3 31 31 H 1.09003 * 109.47037 * 240.00648 * 2 1 3 32 32 H 1.08997 * 109.47881 * 120.00570 * 2 1 3 33 33 H 1.08000 * 120.07582 * 0.02562 * 5 4 3 34 34 H 0.97003 * 120.00074 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.47508 * 22.91750 * 18 9 7 36 36 H 1.08998 * 109.47480 * 142.92310 * 18 9 7 37 37 H 1.08998 * 109.47537 * 180.02562 * 19 18 9 38 38 H 1.09002 * 109.46595 * 300.00226 * 19 18 9 39 39 H 1.08999 * 109.47213 * 59.99839 * 19 18 9 40 40 H 1.08004 * 119.92356 * 180.23312 * 24 20 6 41 41 H 1.09004 * 109.47105 * 180.02562 * 27 26 25 42 42 H 1.08996 * 109.47323 * 300.00585 * 27 26 25 43 43 H 1.09001 * 109.46718 * 60.00108 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.1957 0.4304 -0.0016 6 6 5.5815 0.6173 -0.0016 7 6 6.4844 -0.5482 -0.0022 8 8 7.1979 -0.7636 -0.9618 9 7 6.5224 -1.3717 1.0641 10 6 7.4061 -2.3689 1.1050 11 1 8.0006 -2.5997 0.2334 12 6 7.5712 -3.1532 2.3347 13 7 6.8362 -2.8985 3.3676 14 14 8.8431 -4.5195 2.4073 15 1 10.1930 -3.9527 2.1594 16 1 8.8112 -5.1546 3.7493 17 1 8.5357 -5.5376 1.3709 18 6 5.5925 -1.1709 2.1782 19 6 6.2869 -0.3750 3.2851 20 6 6.1089 1.9122 0.0047 21 7 7.5752 2.1142 0.0108 22 8 8.0720 3.3319 0.0806 23 8 8.3832 1.0761 -0.0536 24 6 5.2638 2.9999 0.0009 25 6 3.8876 2.8141 0.0009 26 8 3.0589 3.8898 0.0019 27 6 3.6717 5.1807 0.0034 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.7843 -0.5682 -0.0024 34 1 6.9450 -3.4171 4.1802 35 1 4.7193 -0.6203 1.8280 36 1 5.2790 -2.1389 2.5689 37 1 5.5953 -0.2259 4.1142 38 1 7.1601 -0.9255 3.6353 39 1 6.6005 0.5931 2.8945 40 1 5.6725 3.9996 0.0020 41 1 2.8990 5.9496 0.0045 42 1 4.2915 5.2877 0.8935 43 1 4.2918 5.2895 -0.8864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:58 Heat of formation + Delta-G solvation = -19.927060 kcal Electronic energy + Delta-G solvation = -31110.701374 eV Core-core repulsion = 26742.520302 eV Total energy + Delta-G solvation = -4368.181071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -40.92076 -39.15558 -38.75076 -37.87470 -36.24536 -35.34390 -33.28404 -32.49335 -32.12562 -30.73971 -30.03260 -29.71170 -27.65610 -26.04449 -24.95600 -24.09631 -22.64506 -22.15334 -21.48836 -20.09696 -18.64556 -17.88969 -17.49582 -17.28205 -16.68706 -16.40799 -16.12553 -15.84062 -15.63412 -15.17893 -14.92385 -14.49690 -14.36499 -13.93947 -13.80494 -13.39249 -13.19452 -13.10959 -12.97785 -12.67306 -12.28128 -12.15344 -12.02564 -11.67356 -11.65542 -11.41077 -11.34506 -11.12196 -11.05244 -10.86460 -10.62475 -10.46881 -10.34095 -10.28417 -9.92567 -9.67013 -9.25023 -8.90951 -8.60033 -8.29688 -7.99605 -6.91417 -3.80858 -0.12734 1.04583 1.65232 2.05354 2.89927 2.95264 2.98264 3.01498 3.09996 3.34969 3.68318 3.78082 4.38419 4.52843 4.68177 4.78488 4.79370 4.84611 5.01824 5.06973 5.08288 5.12663 5.13532 5.37424 5.40466 5.45837 5.58583 5.62802 5.78620 5.88951 5.95542 6.10248 6.23994 6.38459 6.42606 6.60420 6.67342 6.77634 6.86096 7.12618 7.33049 7.36135 7.59739 7.81877 8.02298 8.73727 8.97321 9.74135 9.93722 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.004705 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.995471 B = 5949.178826 C = 7516.238901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.297 6.297 4 C 0.146 3.854 5 C -0.162 4.162 6 C -0.017 4.017 7 C 0.441 3.559 8 O -0.557 6.557 9 N -0.385 5.385 10 C -0.265 4.265 11 H 0.125 0.875 12 C 0.026 3.974 13 N -0.804 5.804 14 Si 0.945 3.055 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.264 1.264 18 C 0.097 3.903 19 C -0.140 4.140 20 C 0.018 3.982 21 N -0.012 5.012 22 O -0.283 6.283 23 O -0.139 6.139 24 C -0.121 4.121 25 C 0.092 3.908 26 O -0.299 6.299 27 C 0.022 3.978 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.155 0.845 34 H 0.286 0.714 35 H 0.042 0.958 36 H 0.121 0.879 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.018 0.982 40 H 0.159 0.841 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.184 4.473 0.588 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.210 6.210 4 C 0.099 3.901 5 C -0.183 4.183 6 C -0.025 4.025 7 C 0.233 3.767 8 O -0.441 6.441 9 N -0.098 5.098 10 C -0.397 4.397 11 H 0.142 0.858 12 C -0.188 4.188 13 N -0.440 5.440 14 Si 0.769 3.231 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.189 1.189 18 C -0.025 4.025 19 C -0.198 4.198 20 C -0.075 4.075 21 N 0.437 4.563 22 O -0.440 6.440 23 O -0.329 6.329 24 C -0.141 4.141 25 C 0.045 3.955 26 O -0.212 6.212 27 C -0.074 4.074 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.172 0.828 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.139 0.861 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.037 0.963 40 H 0.176 0.824 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.735 4.630 0.321 14.497 hybrid contribution 1.202 -0.310 0.336 1.286 sum -12.533 4.320 0.657 13.272 Atomic orbital electron populations 1.21751 0.92403 1.02935 1.03517 1.22963 0.96179 0.81620 1.02233 1.86173 1.17347 1.29580 1.87867 1.18217 0.83397 0.90722 0.97796 1.21110 0.91310 0.98514 1.07341 1.19713 0.93749 0.93195 0.95796 1.17093 0.88295 0.84132 0.87189 1.90651 1.46366 1.72335 1.34773 1.43132 1.28553 1.22352 1.15803 1.21261 1.15283 1.04665 0.98534 0.85774 1.27138 0.98205 0.99734 0.93682 1.69147 1.34674 1.36669 1.03488 0.85656 0.80407 0.79060 0.78011 1.18667 1.20283 1.18862 1.22139 0.90323 1.03222 0.86861 1.22102 1.02682 0.97459 0.97569 1.19584 0.78338 0.93832 1.15711 1.49909 1.03524 1.02453 1.00411 1.96128 1.81206 1.04553 1.62138 1.96377 1.56056 1.27703 1.52791 1.20561 0.90670 0.99824 1.03049 1.17786 0.87513 0.85813 1.04412 1.86125 1.33051 1.12896 1.89138 1.23152 1.00071 0.82307 1.01823 0.90192 0.91440 0.91529 0.91469 0.91284 0.82783 0.90141 0.93992 0.86101 0.93839 0.89385 0.96288 0.82378 0.87900 0.92328 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.15 0.38 -0.81 16 2 C 0.04 0.47 5.46 37.15 0.20 0.68 16 3 O -0.30 -4.12 9.92 -34.39 -0.34 -4.46 16 4 C 0.15 2.31 6.69 -39.18 -0.26 2.04 16 5 C -0.16 -2.78 6.65 -39.04 -0.26 -3.04 16 6 C -0.02 -0.36 4.76 -104.97 -0.50 -0.86 16 7 C 0.44 10.99 5.26 -12.52 -0.07 10.92 16 8 O -0.56 -15.88 14.70 -18.13 -0.27 -16.15 16 9 N -0.38 -9.21 2.55 -114.48 -0.29 -9.50 16 10 C -0.26 -6.58 9.71 -13.46 -0.13 -6.71 16 11 H 0.12 3.28 7.22 -52.49 -0.38 2.90 16 12 C 0.03 0.57 5.35 -15.16 -0.08 0.49 16 13 N -0.80 -17.04 7.37 56.00 0.41 -16.63 16 14 Si 0.94 17.66 29.65 -169.99 -5.04 12.62 16 15 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 16 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 18 C 0.10 2.01 5.28 -4.04 -0.02 1.99 16 19 C -0.14 -2.90 9.44 37.16 0.35 -2.55 16 20 C 0.02 0.38 6.91 -79.54 -0.55 -0.17 16 21 N -0.01 -0.29 4.98 34.16 0.17 -0.12 16 22 O -0.28 -6.85 19.15 -31.57 -0.60 -7.45 16 23 O -0.14 -3.87 15.81 -39.65 -0.63 -4.50 16 24 C -0.12 -2.11 8.55 -39.53 -0.34 -2.44 16 25 C 0.09 1.46 6.71 -38.89 -0.26 1.20 16 26 O -0.30 -4.16 10.26 -33.70 -0.35 -4.51 16 27 C 0.02 0.21 9.81 101.05 0.99 1.20 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 32 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 33 H 0.15 2.32 6.01 -52.49 -0.32 2.01 16 34 H 0.29 5.59 8.26 -40.82 -0.34 5.25 16 35 H 0.04 0.77 4.78 -51.93 -0.25 0.52 16 36 H 0.12 2.53 5.85 -51.93 -0.30 2.22 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.99 5.89 -51.93 -0.31 1.68 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.16 2.46 5.78 -52.48 -0.30 2.16 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 43 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -31.45 359.83 -7.17 -38.62 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.12 Total: 4.72 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.54 Total: 1.95 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.29 Total: -26.26 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -2.18 Total: -37.07 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.04 Total: 12.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.45 -7.17 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.688 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds