Wall clock time and date at job start Tue Mar 31 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99728 * 2 1 4 4 C 1.38657 * 120.02852 * 0.32465 * 3 2 1 5 5 C 1.38607 * 119.89159 * 180.22561 * 4 3 2 6 6 O 1.35896 * 120.02968 * 179.74360 * 5 4 3 7 7 C 1.42905 * 117.00039 * 179.72519 * 6 5 4 8 8 C 1.50699 * 109.46972 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99707 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 10 8 7 13 13 H 1.09002 * 109.46881 * 0.02562 * 12 10 8 14 14 C 1.52989 * 109.47068 * 239.99876 * 12 10 8 15 15 C 1.50702 * 109.47191 * 119.99409 * 12 10 8 16 16 H 1.08004 * 119.99872 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00029 * 180.02562 * 15 12 10 18 18 N 1.31517 * 120.00128 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00120 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47417 * 89.99742 * 19 17 15 21 21 H 1.48501 * 109.47326 * 210.00034 * 19 17 15 22 22 H 1.48505 * 109.46949 * 329.99725 * 19 17 15 23 23 C 1.38800 * 119.94506 * 359.47118 * 5 4 3 24 24 C 1.38154 * 120.05398 * 0.25521 * 23 5 4 25 25 C 1.38199 * 120.10897 * 359.97438 * 24 23 5 26 26 N 1.48006 * 119.97454 * 179.97438 * 25 24 23 27 27 O 1.21804 * 119.99631 * 0.02562 * 26 25 24 28 28 O 1.21797 * 120.00055 * 180.02562 * 26 25 24 29 29 H 1.09007 * 109.47090 * 59.99872 * 1 2 3 30 30 H 1.08999 * 109.46792 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47401 * 299.99619 * 1 2 3 32 32 H 1.08004 * 120.05816 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.47187 * 300.00222 * 7 6 5 34 34 H 1.09001 * 109.46558 * 60.00270 * 7 6 5 35 35 H 1.09002 * 109.47085 * 90.00762 * 11 10 8 36 36 H 1.09002 * 109.46740 * 210.00435 * 11 10 8 37 37 H 1.09001 * 109.47266 * 330.00158 * 11 10 8 38 38 H 1.09001 * 109.47350 * 179.97438 * 14 12 10 39 39 H 1.09002 * 109.47397 * 299.99840 * 14 12 10 40 40 H 1.09002 * 109.47680 * 60.00058 * 14 12 10 41 41 H 0.96992 * 119.99784 * 179.97438 * 18 17 15 42 42 H 1.08003 * 119.97357 * 180.27306 * 23 5 4 43 43 H 1.08000 * 119.94741 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3741 0.0068 5 6 1.9234 3.6076 0.0021 6 8 1.1865 4.7495 0.0034 7 6 1.9045 5.9850 0.0044 8 6 0.9285 7.1332 0.0065 9 8 -0.2645 6.9149 0.0076 10 7 1.3813 8.4026 0.0072 11 6 2.8224 8.6662 0.0065 12 6 0.4325 9.5188 0.0098 13 1 -0.5858 9.1300 0.0114 14 6 0.6499 10.3758 -1.2387 15 6 0.6501 10.3603 1.2409 16 1 1.4187 10.0908 1.9503 17 6 -0.1319 11.4742 1.4618 18 7 -1.0681 11.8020 0.5983 19 14 0.1383 12.5176 2.9874 20 1 1.1320 13.5804 2.6906 21 1 -1.1465 13.1410 3.3948 22 1 0.6443 11.6608 4.0898 23 6 3.3097 3.6757 0.0016 24 6 4.0595 2.5153 0.0006 25 6 3.4315 1.2842 0.0005 26 7 4.2376 0.0430 -0.0012 27 8 5.4540 0.1068 -0.0021 28 8 3.6847 -1.0423 -0.0017 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2127 2.3192 0.0117 33 1 2.5317 6.0401 0.8942 34 1 2.5310 6.0418 -0.8858 35 1 3.1791 8.7325 -1.0214 36 1 3.0200 9.6066 0.5210 37 1 3.3403 7.8557 0.5193 38 1 -0.0564 11.2061 -1.2371 39 1 1.6682 10.7647 -1.2398 40 1 0.4924 9.7673 -2.1292 41 1 -1.6185 12.5854 0.7538 42 1 3.8028 4.6367 0.0024 43 1 5.1381 2.5703 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:07 Heat of formation + Delta-G solvation = -74.612801 kcal Electronic energy + Delta-G solvation = -28827.627663 eV Core-core repulsion = 24457.075240 eV Total energy + Delta-G solvation = -4370.552423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27085 -41.02299 -39.92237 -38.88032 -37.18226 -36.44688 -35.52037 -33.10167 -31.89765 -31.05538 -30.13377 -28.17196 -27.88331 -26.34562 -26.01519 -25.35226 -23.21178 -22.64733 -21.31383 -19.83285 -18.98152 -18.91076 -18.51271 -17.61356 -17.40201 -16.88326 -16.78223 -16.57959 -16.20508 -15.92675 -15.69979 -15.09707 -14.87283 -14.51545 -14.21320 -13.75094 -13.60997 -13.30146 -12.95058 -12.68268 -12.61830 -12.28272 -11.97691 -11.88778 -11.75088 -11.67604 -11.55498 -11.35223 -11.18593 -11.14297 -11.12051 -10.94255 -10.85640 -10.41236 -10.30105 -9.38509 -9.37322 -9.22357 -9.05808 -8.56433 -7.86614 -6.20571 -4.29661 -0.22569 0.54986 1.20687 1.34581 2.25015 2.54971 2.85872 2.97602 3.17555 3.25663 3.27587 3.74095 3.91887 4.15309 4.27383 4.35637 4.40192 4.55981 4.65498 4.72405 4.78429 4.84931 4.86781 5.04819 5.10351 5.11320 5.30796 5.42768 5.50980 5.62063 5.77257 6.13831 6.23675 6.48928 6.58429 6.63753 6.71764 6.88747 7.18235 7.32899 7.55749 7.66017 7.84381 8.01690 8.25154 8.60636 8.77905 9.37202 10.84853 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.002148 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.860992 B =13033.287331 C =13501.626760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.278 6.278 3 C 0.235 3.765 4 C -0.252 4.252 5 C 0.230 3.770 6 O -0.270 6.270 7 C 0.034 3.966 8 C 0.505 3.495 9 O -0.528 6.528 10 N -0.586 5.586 11 C 0.077 3.923 12 C 0.259 3.741 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.247 4.247 24 C 0.024 3.976 25 C -0.125 4.125 26 N 0.046 4.954 27 O -0.189 6.189 28 O -0.148 6.148 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.031 0.969 40 H 0.012 0.988 41 H 0.265 0.735 42 H 0.155 0.845 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -16.757 -2.628 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.188 6.188 3 C 0.185 3.815 4 C -0.272 4.272 5 C 0.180 3.820 6 O -0.180 6.180 7 C -0.044 4.044 8 C 0.290 3.710 9 O -0.405 6.405 10 N -0.319 5.319 11 C -0.067 4.067 12 C 0.160 3.840 13 H 0.083 0.917 14 C -0.205 4.205 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.523 5.523 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.266 4.266 24 C 0.004 3.996 25 C -0.211 4.211 26 N 0.561 4.439 27 O -0.397 6.397 28 O -0.367 6.367 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.172 0.828 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.151 -16.257 -2.660 17.958 hybrid contribution 0.439 0.659 0.816 1.137 sum 7.590 -15.598 -1.844 17.444 Atomic orbital electron populations 1.23382 0.76702 1.05319 1.02462 1.86426 1.22736 1.23940 1.85712 1.18227 0.89060 0.85788 0.88462 1.20401 1.01894 0.88283 1.16586 1.19085 0.89863 0.86773 0.86239 1.86260 1.34456 1.11901 1.85360 1.22969 0.95509 0.82044 1.03915 1.19639 0.88817 0.83588 0.78991 1.90723 1.16121 1.83971 1.49662 1.48227 1.07800 1.05566 1.70266 1.21717 0.81184 1.02932 1.00882 1.19035 0.89151 0.81422 0.94407 0.91716 1.22095 1.01268 1.01571 0.95591 1.21270 1.19230 1.10039 1.06387 0.92135 1.24896 0.94718 0.97284 0.96808 1.69869 1.20428 1.26644 1.35384 0.86463 0.77718 0.80234 0.82801 1.20521 1.21008 1.19903 1.21256 0.92341 0.99795 1.13251 1.20655 1.01928 0.88245 0.88722 1.20331 0.88048 0.85801 1.26902 1.43207 1.01008 1.02327 0.97371 1.94514 0.95749 1.93968 1.55453 1.94573 1.74229 1.14991 1.52878 0.91552 0.86935 0.91525 0.82085 0.88492 0.88609 0.93300 0.89371 0.92975 0.88627 0.94992 0.96911 0.92505 0.82760 0.81982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.28 -2.87 8.50 -41.58 -0.35 -3.22 16 3 C 0.23 2.52 6.67 -39.24 -0.26 2.26 16 4 C -0.25 -2.53 8.97 -39.29 -0.35 -2.89 16 5 C 0.23 2.45 6.68 -39.24 -0.26 2.19 16 6 O -0.27 -3.63 9.67 -39.33 -0.38 -4.01 16 7 C 0.03 0.41 3.77 36.01 0.14 0.55 16 8 C 0.51 9.36 7.75 -10.99 -0.09 9.28 16 9 O -0.53 -12.34 15.83 -14.35 -0.23 -12.56 16 10 N -0.59 -11.12 2.75 -175.26 -0.48 -11.60 16 11 C 0.08 1.06 9.24 59.85 0.55 1.61 16 12 C 0.26 6.17 2.63 -69.09 -0.18 5.99 16 13 H 0.07 1.81 6.90 -51.93 -0.36 1.46 16 14 C -0.15 -3.27 8.97 37.15 0.33 -2.94 16 15 C -0.53 -13.44 7.99 -34.44 -0.28 -13.72 16 16 H 0.06 1.49 7.33 -52.48 -0.38 1.11 16 17 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -23.99 11.32 55.43 0.63 -23.36 16 19 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.25 -2.09 9.04 -39.40 -0.36 -2.45 16 24 C 0.02 0.21 9.54 -39.63 -0.38 -0.17 16 25 C -0.13 -1.42 6.87 -79.78 -0.55 -1.97 16 26 N 0.05 0.62 4.45 34.05 0.15 0.77 16 27 O -0.19 -2.60 18.44 -29.46 -0.54 -3.14 16 28 O -0.15 -2.15 17.23 -36.50 -0.63 -2.78 16 29 H 0.07 0.34 7.67 -51.92 -0.40 -0.05 16 30 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.35 7.65 -51.93 -0.40 -0.05 16 32 H 0.16 1.40 6.30 -52.48 -0.33 1.07 16 33 H 0.10 0.92 6.92 -51.93 -0.36 0.57 16 34 H 0.10 0.87 7.63 -51.93 -0.40 0.47 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.34 7.02 -51.93 -0.36 0.98 16 37 H 0.05 0.52 6.44 -51.93 -0.33 0.18 16 38 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 39 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.15 0.91 6.29 -52.48 -0.33 0.58 16 43 H 0.16 1.12 7.60 -52.49 -0.40 0.72 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -33.10 366.52 -7.28 -40.38 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.17 Total: -1.49 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.78 Total: 0.44 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.30 Total: -34.19 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -2.13 Total: -25.71 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.10 -7.28 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.231 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds