Wall clock time and date at job start Tue Mar 31 2020 21:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99728 * 2 1 4 4 C 1.38657 * 120.02852 * 0.32465 * 3 2 1 5 5 C 1.38607 * 119.89159 * 180.22561 * 4 3 2 6 6 O 1.35896 * 120.02968 * 179.74360 * 5 4 3 7 7 C 1.42905 * 117.00039 * 179.72519 * 6 5 4 8 8 C 1.50699 * 109.46972 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99707 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 10 8 7 13 13 H 1.09002 * 109.46881 * 0.02562 * 12 10 8 14 14 C 1.52989 * 109.47068 * 239.99876 * 12 10 8 15 15 C 1.50702 * 109.47191 * 119.99409 * 12 10 8 16 16 H 1.08004 * 119.99872 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00029 * 180.02562 * 15 12 10 18 18 N 1.31517 * 120.00128 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00120 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47417 * 89.99742 * 19 17 15 21 21 H 1.48501 * 109.47326 * 210.00034 * 19 17 15 22 22 H 1.48505 * 109.46949 * 329.99725 * 19 17 15 23 23 C 1.38800 * 119.94506 * 359.47118 * 5 4 3 24 24 C 1.38154 * 120.05398 * 0.25521 * 23 5 4 25 25 C 1.38199 * 120.10897 * 359.97438 * 24 23 5 26 26 N 1.48006 * 119.97454 * 179.97438 * 25 24 23 27 27 O 1.21804 * 119.99631 * 0.02562 * 26 25 24 28 28 O 1.21797 * 120.00055 * 180.02562 * 26 25 24 29 29 H 1.09007 * 109.47090 * 59.99872 * 1 2 3 30 30 H 1.08999 * 109.46792 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47401 * 299.99619 * 1 2 3 32 32 H 1.08004 * 120.05816 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.47187 * 300.00222 * 7 6 5 34 34 H 1.09001 * 109.46558 * 60.00270 * 7 6 5 35 35 H 1.09002 * 109.47085 * 90.00762 * 11 10 8 36 36 H 1.09002 * 109.46740 * 210.00435 * 11 10 8 37 37 H 1.09001 * 109.47266 * 330.00158 * 11 10 8 38 38 H 1.09001 * 109.47350 * 179.97438 * 14 12 10 39 39 H 1.09002 * 109.47397 * 299.99840 * 14 12 10 40 40 H 1.09002 * 109.47680 * 60.00058 * 14 12 10 41 41 H 0.96992 * 119.99784 * 179.97438 * 18 17 15 42 42 H 1.08003 * 119.97357 * 180.27306 * 23 5 4 43 43 H 1.08000 * 119.94741 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3741 0.0068 5 6 1.9234 3.6076 0.0021 6 8 1.1865 4.7495 0.0034 7 6 1.9045 5.9850 0.0044 8 6 0.9285 7.1332 0.0065 9 8 -0.2645 6.9149 0.0076 10 7 1.3813 8.4026 0.0072 11 6 2.8224 8.6662 0.0065 12 6 0.4325 9.5188 0.0098 13 1 -0.5858 9.1300 0.0114 14 6 0.6499 10.3758 -1.2387 15 6 0.6501 10.3603 1.2409 16 1 1.4187 10.0908 1.9503 17 6 -0.1319 11.4742 1.4618 18 7 -1.0681 11.8020 0.5983 19 14 0.1383 12.5176 2.9874 20 1 1.1320 13.5804 2.6906 21 1 -1.1465 13.1410 3.3948 22 1 0.6443 11.6608 4.0898 23 6 3.3097 3.6757 0.0016 24 6 4.0595 2.5153 0.0006 25 6 3.4315 1.2842 0.0005 26 7 4.2376 0.0430 -0.0012 27 8 5.4540 0.1068 -0.0021 28 8 3.6847 -1.0423 -0.0017 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2127 2.3192 0.0117 33 1 2.5317 6.0401 0.8942 34 1 2.5310 6.0418 -0.8858 35 1 3.1791 8.7325 -1.0214 36 1 3.0200 9.6066 0.5210 37 1 3.3403 7.8557 0.5193 38 1 -0.0564 11.2061 -1.2371 39 1 1.6682 10.7647 -1.2398 40 1 0.4924 9.7673 -2.1292 41 1 -1.6185 12.5854 0.7538 42 1 3.8028 4.6367 0.0024 43 1 5.1381 2.5703 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:06 Heat of formation + Delta-G solvation = -94.404445 kcal Electronic energy + Delta-G solvation = -28828.485893 eV Core-core repulsion = 24457.075240 eV Total energy + Delta-G solvation = -4371.410653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.19152 -41.89217 -40.96176 -40.02166 -38.02785 -37.43686 -37.11429 -34.87403 -32.78311 -31.82956 -31.67020 -29.25178 -28.54541 -27.56636 -27.30392 -26.92257 -24.05168 -23.58672 -22.73813 -20.64851 -20.28518 -19.83894 -19.55759 -18.61155 -18.55707 -18.21672 -17.71143 -17.60577 -17.23187 -17.09918 -16.90717 -16.32253 -15.78912 -15.77711 -15.38692 -14.69180 -14.48717 -14.39632 -14.09405 -14.07550 -13.75852 -13.53965 -13.08589 -12.93027 -12.84054 -12.75520 -12.65782 -12.62348 -12.58385 -12.55741 -12.21406 -12.17211 -12.13748 -12.10084 -12.04305 -11.20237 -10.75478 -10.50734 -10.13836 -9.80126 -9.40305 -8.16003 -6.32402 -1.12271 -0.13858 0.30057 0.46917 1.32728 1.41836 1.44319 1.52975 1.63086 1.86930 2.12427 2.37461 2.57831 3.13038 3.19528 3.38285 3.53348 3.67757 3.73915 3.89288 3.99623 4.02882 4.27328 4.28988 4.39919 4.46593 4.62522 4.67325 4.75019 4.77704 4.79999 4.89506 4.96044 5.04982 5.08553 5.31585 5.46732 5.52896 5.64859 5.79354 5.92180 6.02485 6.14458 6.62804 6.72226 6.75844 7.24421 7.41841 8.88460 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.002148 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.860992 B =13033.287331 C =13501.626760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.298 6.298 3 C 0.230 3.770 4 C -0.256 4.256 5 C 0.223 3.777 6 O -0.299 6.299 7 C 0.045 3.955 8 C 0.492 3.508 9 O -0.593 6.593 10 N -0.593 5.593 11 C 0.068 3.932 12 C 0.262 3.738 13 H 0.008 0.992 14 C -0.133 4.133 15 C -0.537 4.537 16 H 0.066 0.934 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.269 1.269 23 C -0.230 4.230 24 C 0.031 3.969 25 C -0.142 4.142 26 N 0.047 4.953 27 O -0.189 6.189 28 O -0.189 6.189 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.021 0.979 41 H 0.264 0.736 42 H 0.192 0.808 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.352 -16.505 -2.184 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.208 6.208 3 C 0.179 3.821 4 C -0.276 4.276 5 C 0.174 3.826 6 O -0.210 6.210 7 C -0.032 4.032 8 C 0.280 3.720 9 O -0.475 6.475 10 N -0.324 5.324 11 C -0.074 4.074 12 C 0.160 3.840 13 H 0.025 0.975 14 C -0.191 4.191 15 C -0.576 4.576 16 H 0.085 0.915 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.194 1.194 23 C -0.249 4.249 24 C 0.012 3.988 25 C -0.229 4.229 26 N 0.557 4.443 27 O -0.399 6.399 28 O -0.399 6.399 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.092 0.908 32 H 0.185 0.815 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.209 0.791 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.083 -16.075 -2.219 19.105 hybrid contribution -0.500 0.584 0.654 1.009 sum 9.583 -15.491 -1.565 18.283 Atomic orbital electron populations 1.23658 0.74882 1.06828 1.03236 1.86415 1.24713 1.24146 1.85531 1.18330 0.89109 0.86093 0.88526 1.20491 1.02358 0.88213 1.16520 1.19227 0.90818 0.85806 0.86766 1.86214 1.35950 1.12783 1.86045 1.22962 0.93333 0.79222 1.07703 1.20749 0.89193 0.84832 0.77222 1.90693 1.19398 1.85020 1.52359 1.48169 1.09383 1.04876 1.70010 1.22069 0.78028 1.04147 1.03121 1.18564 0.87998 0.82793 0.94679 0.97451 1.21871 1.01443 1.00445 0.95357 1.21581 1.18997 1.10005 1.06974 0.91547 1.25735 0.94560 0.98725 0.99541 1.70023 1.21403 1.27131 1.37135 0.85466 0.77452 0.78778 0.79376 1.19253 1.21582 1.19366 1.21571 0.91075 1.01044 1.11252 1.20976 1.03136 0.87197 0.87501 1.20667 0.88272 0.85521 1.28398 1.43508 1.01061 1.02909 0.96828 1.94476 0.96328 1.94140 1.54959 1.94570 1.74266 1.16121 1.54928 0.90708 0.85169 0.90776 0.81521 0.84681 0.84263 0.90716 0.90982 0.88055 0.91603 0.93040 0.96021 0.92691 0.79078 0.79619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.30 -6.08 8.50 -71.23 -0.61 -6.69 16 3 C 0.23 4.70 6.67 22.49 0.15 4.85 16 4 C -0.26 -4.78 8.97 22.46 0.20 -4.57 16 5 C 0.22 4.07 6.68 22.49 0.15 4.22 16 6 O -0.30 -7.24 9.67 -73.35 -0.71 -7.95 16 7 C 0.04 0.90 3.77 71.24 0.27 1.17 16 8 C 0.49 17.59 7.75 87.66 0.68 18.27 16 9 O -0.59 -28.56 15.83 16.00 0.25 -28.31 16 10 N -0.59 -21.56 2.75 -826.80 -2.28 -23.84 16 11 C 0.07 1.59 9.24 127.77 1.18 2.77 16 12 C 0.26 12.65 2.63 44.24 0.12 12.77 16 13 H 0.01 0.45 6.90 -2.39 -0.02 0.43 16 14 C -0.13 -5.95 8.97 71.98 0.65 -5.30 16 15 C -0.54 -27.26 7.99 25.60 0.20 -27.06 16 16 H 0.07 3.20 7.33 -2.91 -0.02 3.18 16 17 C 0.01 0.74 5.30 84.65 0.45 1.18 16 18 N -0.92 -51.16 11.32 21.45 0.24 -50.92 16 19 Si 0.96 41.05 29.54 68.60 2.03 43.07 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C -0.23 -2.80 9.04 22.38 0.20 -2.59 16 24 C 0.03 0.43 9.54 22.24 0.21 0.65 16 25 C -0.14 -3.00 6.87 36.49 0.25 -2.75 16 26 N 0.05 1.24 4.45 -46.20 -0.21 1.03 16 27 O -0.19 -4.94 18.44 18.88 0.35 -4.59 16 28 O -0.19 -5.58 17.23 25.62 0.44 -5.14 16 29 H 0.07 0.74 7.67 -2.38 -0.02 0.72 16 30 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.74 7.65 -2.39 -0.02 0.73 16 32 H 0.17 2.78 6.30 -2.91 -0.02 2.76 16 33 H 0.14 1.71 6.92 -2.39 -0.02 1.69 16 34 H 0.14 1.62 7.63 -2.39 -0.02 1.60 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.95 7.02 -2.39 -0.02 1.93 16 37 H 0.10 1.36 6.44 -2.39 -0.02 1.34 16 38 H 0.07 3.36 6.07 -2.39 -0.01 3.35 16 39 H 0.05 2.04 7.67 -2.39 -0.02 2.03 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.19 0.85 6.29 -2.91 -0.02 0.83 16 43 H 0.19 1.73 7.60 -2.91 -0.02 1.71 16 Total: -1.00 -78.50 366.52 6.40 -72.10 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.06 Total: 6.44 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.82 Total: 4.80 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.24 Total: -73.72 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.27 Total: -52.69 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -78.50 6.40 -72.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.306 kcal (2) G-P(sol) polarization free energy of solvation -78.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds