Wall clock time and date at job start Tue Mar 31 2020 20:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.08997 * 109.46866 * 55.00001 * 3 2 1 5 5 C 1.50695 * 109.46984 * 175.00283 * 3 2 1 6 6 H 1.07995 * 120.00047 * 120.00424 * 5 3 2 7 7 C 1.37877 * 119.99858 * 299.99282 * 5 3 2 8 8 N 1.31517 * 120.00363 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46960 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47062 * 120.00538 * 9 7 5 12 12 H 1.48499 * 109.46971 * 240.00475 * 9 7 5 13 13 N 1.46500 * 109.46902 * 295.00232 * 3 2 1 14 14 C 1.34769 * 120.00355 * 84.99765 * 13 3 2 15 15 O 1.21589 * 119.99831 * 0.02562 * 14 13 3 16 16 C 1.47610 * 120.00168 * 179.97438 * 14 13 3 17 17 C 1.39763 * 120.07165 * 6.66370 * 16 14 13 18 18 C 1.38099 * 119.85224 * 179.97438 * 17 16 14 19 19 O 1.36005 * 120.00408 * 180.02562 * 18 17 16 20 20 C 1.42900 * 116.99913 * 0.02562 * 19 18 17 21 21 C 1.39444 * 119.99542 * 0.27825 * 18 17 16 22 22 O 1.35800 * 119.92824 * 179.72468 * 21 18 17 23 23 C 1.42901 * 116.99793 * 179.97438 * 22 21 18 24 24 C 1.38798 * 120.14041 * 359.41869 * 21 18 17 25 25 C 1.37836 * 120.14711 * 0.60481 * 24 21 18 26 26 N 1.48016 * 119.99391 * 179.69532 * 25 24 21 27 27 O 1.21795 * 120.00127 * 51.28270 * 26 25 24 28 28 O 1.21802 * 119.99813 * 231.28157 * 26 25 24 29 29 H 1.09000 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47025 * 300.00070 * 1 2 3 31 31 H 1.09001 * 109.47196 * 59.99982 * 1 2 3 32 32 H 1.08997 * 109.47025 * 239.99930 * 2 1 3 33 33 H 1.09001 * 109.47196 * 120.00018 * 2 1 3 34 34 H 0.96994 * 120.00060 * 179.97438 * 8 7 5 35 35 H 0.97006 * 119.99470 * 265.00175 * 13 3 2 36 36 H 1.08003 * 120.07704 * 0.02562 * 17 16 14 37 37 H 1.09000 * 109.47157 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46755 * 59.99840 * 20 19 18 39 39 H 1.08997 * 109.47246 * 300.00425 * 20 19 18 40 40 H 1.09009 * 109.46784 * 59.99847 * 23 22 21 41 41 H 1.09000 * 109.47239 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47340 * 300.00315 * 23 22 21 43 43 H 1.08000 * 119.92436 * 180.29370 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8812 1.3817 10 1 6.5987 1.5472 0.1946 11 1 6.3991 1.6167 2.6101 12 1 6.4970 -0.5175 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3412 2.6326 -0.4317 16 6 0.0449 3.3248 -2.6281 17 6 0.8772 3.2435 -3.7479 18 6 0.5073 3.8627 -4.9257 19 8 1.3147 3.7852 -6.0174 20 6 2.5297 3.0467 -5.8747 21 6 -0.6914 4.5718 -4.9939 22 8 -1.0511 5.1847 -6.1510 23 6 -2.2921 5.8933 -6.1513 24 6 -1.5208 4.6470 -3.8835 25 6 -1.1572 4.0317 -2.7049 26 7 -2.0411 4.1198 -1.5209 27 8 -3.2207 3.8331 -1.6188 28 8 -1.5886 4.4790 -0.4486 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0616 2.9495 35 1 2.2720 2.1231 -1.9978 36 1 1.8071 2.6971 -3.6927 37 1 3.0778 3.0634 -6.8167 38 1 2.2988 2.0155 -5.6073 39 1 3.1389 3.4974 -5.0913 40 1 -2.2602 6.6821 -5.3995 41 1 -2.4582 6.3349 -7.1339 42 1 -3.1041 5.2040 -5.9203 43 1 -2.4507 5.1931 -3.9416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183913500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:36 Heat of formation + Delta-G solvation = -93.138593 kcal Electronic energy + Delta-G solvation = -30478.509177 eV Core-core repulsion = 26107.153416 eV Total energy + Delta-G solvation = -4371.355762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.29672 -42.01165 -40.82835 -39.80556 -38.15541 -37.52065 -36.94775 -34.52009 -33.27142 -32.45024 -31.78724 -29.10037 -28.99269 -28.26008 -27.21702 -25.27211 -24.42787 -23.43819 -22.36845 -21.37289 -20.81205 -19.82564 -19.74842 -18.94698 -18.81083 -17.89637 -17.67913 -17.41710 -17.16467 -17.06506 -16.42617 -16.34876 -16.19412 -16.04829 -15.36277 -14.78472 -14.68678 -14.46998 -14.26448 -13.78439 -13.74981 -13.50655 -13.20960 -12.92989 -12.83764 -12.73831 -12.68756 -12.57311 -12.42215 -12.28922 -12.21877 -12.17593 -12.13149 -12.05510 -11.62639 -11.08342 -10.95382 -10.56008 -10.51991 -9.78902 -9.43106 -8.16314 -6.34378 -1.17854 -0.61337 -0.11853 0.33080 1.45348 1.46966 1.51179 1.58199 1.83175 1.91893 2.11602 2.25950 2.45045 3.03212 3.13967 3.28706 3.42178 3.51861 3.82931 3.98763 4.10853 4.27268 4.31111 4.35758 4.38532 4.43508 4.44361 4.49740 4.68740 4.70341 4.74681 4.80903 5.00447 5.20393 5.25011 5.37178 5.44696 5.56802 5.67685 5.73177 5.84943 6.09019 6.12439 6.49553 6.69512 6.75918 7.23980 7.40907 8.89516 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.003795 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.904182 B = 7375.454698 C = 8921.246837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.118 4.118 3 C 0.280 3.720 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.077 0.923 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.256 1.256 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.685 5.685 14 C 0.527 3.473 15 O -0.554 6.554 16 C -0.083 4.083 17 C -0.128 4.128 18 C 0.148 3.852 19 O -0.298 6.298 20 C 0.001 3.999 21 C 0.138 3.862 22 O -0.297 6.297 23 C 0.005 3.995 24 C -0.124 4.124 25 C -0.002 4.002 26 N 0.030 4.970 27 O -0.169 6.169 28 O -0.144 6.144 29 H 0.046 0.954 30 H 0.024 0.976 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.265 0.735 35 H 0.404 0.596 36 H 0.184 0.816 37 H 0.133 0.867 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.135 0.865 42 H 0.072 0.928 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 8.347 -22.816 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.157 4.157 3 C 0.177 3.823 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.095 0.905 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.180 1.180 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.335 5.335 14 C 0.312 3.688 15 O -0.434 6.434 16 C -0.087 4.087 17 C -0.148 4.148 18 C 0.100 3.900 19 O -0.210 6.210 20 C -0.092 4.092 21 C 0.089 3.911 22 O -0.210 6.210 23 C -0.089 4.089 24 C -0.144 4.144 25 C -0.085 4.085 26 N 0.554 4.446 27 O -0.385 6.385 28 O -0.367 6.367 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.201 0.799 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.153 0.847 42 H 0.091 0.909 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.151 8.252 -22.984 24.771 hybrid contribution 0.571 -0.194 1.202 1.344 sum -3.580 8.058 -21.782 23.499 Atomic orbital electron populations 1.21676 0.97504 0.99108 0.99801 1.21789 0.93156 0.99044 1.01759 1.18482 0.94119 0.89089 0.80639 0.98138 1.21552 0.90847 1.39112 1.06969 0.90453 1.25779 1.03350 0.94328 0.94965 1.70059 1.37109 1.38200 1.09888 0.85307 0.79005 0.77780 0.78286 1.17974 1.21405 1.20512 1.46093 1.14307 1.54951 1.18117 1.18352 0.83535 0.79853 0.87047 1.90932 1.52071 1.59673 1.40732 1.19581 0.93311 1.00027 0.95829 1.21359 1.01446 1.02443 0.89524 1.18290 0.89821 0.94627 0.87303 1.86247 1.33056 1.70435 1.31300 1.23701 0.82757 0.96114 1.06646 1.18008 0.91666 0.95094 0.86299 1.86222 1.41577 1.64518 1.28640 1.23654 0.82454 0.96158 1.06638 1.20708 1.02497 1.02652 0.88555 1.20626 0.92846 1.08259 0.86805 1.43503 1.00941 0.97700 1.02448 1.94433 1.00681 1.51802 1.91594 1.94631 1.78914 1.47581 1.15563 0.93457 0.95705 0.94654 0.93455 0.90638 0.92583 0.75974 0.79936 0.84862 0.90775 0.90769 0.91197 0.84742 0.90937 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.11 16 2 C -0.12 -5.76 5.45 30.60 0.17 -5.59 16 3 C 0.28 14.04 2.24 44.25 0.10 14.14 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.03 16 5 C -0.55 -27.72 8.73 25.60 0.22 -27.49 16 6 H 0.08 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -51.59 11.29 21.45 0.24 -51.34 16 9 Si 0.97 40.67 29.54 68.60 2.03 42.70 16 10 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 13 N -0.69 -27.49 4.97 -449.20 -2.23 -29.72 16 14 C 0.53 21.74 6.19 86.72 0.54 22.28 16 15 O -0.55 -27.85 10.12 19.51 0.20 -27.65 16 16 C -0.08 -2.63 5.87 -20.09 -0.12 -2.75 16 17 C -0.13 -2.86 8.50 22.61 0.19 -2.67 16 18 C 0.15 2.95 6.69 22.53 0.15 3.10 16 19 O -0.30 -5.05 10.28 -79.61 -0.82 -5.87 16 20 C 0.00 0.01 9.81 113.37 1.11 1.13 16 21 C 0.14 2.74 6.71 22.69 0.15 2.89 16 22 O -0.30 -4.89 10.27 -77.31 -0.79 -5.68 16 23 C 0.00 0.04 9.81 113.37 1.11 1.15 16 24 C -0.12 -2.77 8.80 22.31 0.20 -2.57 16 25 C 0.00 -0.08 6.31 36.63 0.23 0.16 16 26 N 0.03 1.17 3.58 -45.87 -0.16 1.00 16 27 O -0.17 -6.45 19.14 18.89 0.36 -6.08 16 28 O -0.14 -6.53 16.11 26.32 0.42 -6.11 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.02 1.25 7.84 -2.39 -0.02 1.23 16 31 H 0.03 1.59 5.65 -2.39 -0.01 1.58 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 4.11 5.95 -2.39 -0.01 4.10 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.40 12.82 6.61 -92.70 -0.61 12.21 16 36 H 0.18 3.14 4.68 -2.91 -0.01 3.12 16 37 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 39 H 0.07 0.63 7.66 -2.39 -0.02 0.62 16 40 H 0.07 0.49 7.67 -2.38 -0.02 0.47 16 41 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 0.51 7.64 -2.39 -0.02 0.49 16 43 H 0.18 3.05 6.27 -2.91 -0.02 3.04 16 Total: -1.00 -75.63 359.34 4.83 -70.80 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.47 Total: 18.00 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.12 Total: -0.06 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.15 Total: -80.06 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.63 Total: -51.39 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -75.63 4.83 -70.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183913500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.336 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds