Wall clock time and date at job start Tue Mar 31 2020 20:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47226 * 2 1 4 4 N 1.46503 * 109.47136 * 179.97438 * 3 2 1 5 5 C 1.33309 * 119.99980 * 264.03538 * 4 3 2 6 6 H 1.08001 * 119.99646 * 136.85581 * 5 4 3 7 7 C 1.46778 * 120.00013 * 316.85871 * 5 4 3 8 8 N 1.29314 * 120.00103 * 348.77317 * 7 5 4 9 9 Si 1.86809 * 119.99879 * 168.77707 * 7 5 4 10 10 H 1.48494 * 109.47202 * 59.99613 * 9 7 5 11 11 H 1.48496 * 109.46938 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46710 * 299.99569 * 9 7 5 13 13 C 1.34774 * 119.99948 * 84.03829 * 4 3 2 14 14 O 1.21512 * 119.99912 * 4.81369 * 13 4 3 15 15 C 1.47435 * 120.00112 * 184.81906 * 13 4 3 16 16 C 1.39879 * 120.07721 * 146.54796 * 15 13 4 17 17 C 1.38053 * 119.84170 * 180.27130 * 16 15 13 18 18 O 1.36001 * 119.99890 * 179.73466 * 17 16 15 19 19 C 1.42896 * 116.99905 * 359.72431 * 18 17 16 20 20 C 1.39494 * 120.00025 * 359.45875 * 17 16 15 21 21 O 1.35773 * 119.91994 * 180.25064 * 20 17 16 22 22 C 1.42900 * 116.99948 * 90.00177 * 21 20 17 23 23 C 1.38837 * 120.15701 * 0.27442 * 20 17 16 24 24 N 1.48026 * 119.91835 * 179.97438 * 23 20 17 25 25 O 1.31702 * 119.99553 * 179.97438 * 24 23 20 26 26 O 1.31693 * 119.99886 * 359.97438 * 24 23 20 27 27 C 1.37775 * 120.15926 * 359.97438 * 23 20 17 28 28 H 1.09002 * 109.47245 * 300.00289 * 1 2 3 29 29 H 1.08997 * 109.46960 * 59.99883 * 1 2 3 30 30 H 1.08993 * 109.47362 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46850 * 239.99637 * 2 1 3 32 32 H 1.08997 * 109.46960 * 120.00117 * 2 1 3 33 33 H 1.08996 * 109.47502 * 60.00036 * 3 2 1 34 34 H 1.08997 * 109.47247 * 299.99941 * 3 2 1 35 35 H 0.97002 * 119.99401 * 180.02562 * 8 7 5 36 36 H 1.08002 * 120.08223 * 0.02562 * 16 15 13 37 37 H 1.08993 * 109.47192 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47109 * 300.00213 * 19 18 17 39 39 H 1.09000 * 109.47259 * 60.00248 * 19 18 17 40 40 H 1.08999 * 109.47197 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47120 * 299.99440 * 22 21 20 42 42 H 1.08993 * 109.47601 * 59.99794 * 22 21 20 43 43 H 1.07995 * 120.00428 * 179.97438 * 27 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1711 1.5625 1.1491 6 1 5.0320 0.9395 1.3417 7 6 3.7344 2.5414 2.1518 8 7 2.8487 3.4317 1.8434 9 14 4.4581 2.5011 3.8736 10 1 5.9281 2.6970 3.7974 11 1 3.8562 3.5864 4.6890 12 1 4.1656 1.1882 4.5028 13 6 4.1794 1.3210 -1.1600 14 8 3.5755 1.2995 -2.2141 15 6 5.6498 1.2140 -1.1505 16 6 6.3023 0.4362 -2.1127 17 6 7.6791 0.3350 -2.0958 18 8 8.3164 -0.4247 -3.0266 19 6 7.4984 -1.0947 -3.9877 20 6 8.4168 1.0165 -1.1277 21 8 9.7710 0.9198 -1.1158 22 6 10.4969 1.8838 -1.8813 23 6 7.7694 1.7930 -0.1761 24 7 8.5574 2.5135 0.8491 25 8 7.9450 3.2509 1.7523 26 8 9.8708 2.4171 0.8581 27 6 6.3955 1.8945 -0.1837 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 2.5605 4.0789 2.5061 36 1 5.7303 -0.0871 -2.8646 37 1 8.1306 -1.6642 -4.6689 38 1 6.8155 -1.7719 -3.4747 39 1 6.9252 -0.3596 -4.5525 40 1 11.5659 1.6933 -1.7857 41 1 10.2072 1.8083 -2.9294 42 1 10.2715 2.8846 -1.5132 43 1 5.8945 2.4989 0.5580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265858014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:19 Heat of formation + Delta-G solvation = -40.184049 kcal Electronic energy + Delta-G solvation = -30812.464939 eV Core-core repulsion = 26443.405459 eV Total energy + Delta-G solvation = -4369.059480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.92081 -39.11960 -38.79963 -37.79957 -36.52372 -35.38061 -33.89286 -33.13646 -32.01437 -31.15643 -30.24637 -27.65627 -27.21862 -26.00738 -25.82483 -24.82367 -22.78391 -21.98285 -20.98242 -19.82573 -18.90218 -17.92147 -17.73793 -17.12930 -16.79011 -16.32607 -16.25935 -15.75675 -15.52043 -15.06198 -14.94191 -14.72191 -14.46655 -14.16528 -14.02705 -13.83453 -13.29568 -12.92082 -12.73550 -12.36645 -12.15671 -11.87859 -11.82584 -11.63939 -11.48492 -11.32427 -11.16934 -11.10197 -10.93611 -10.86410 -10.75286 -10.54310 -10.43590 -10.24681 -10.00652 -9.95420 -9.35164 -9.18870 -8.87247 -8.25909 -7.89288 -6.78466 -4.27469 -0.35620 0.91018 1.39918 1.44698 2.96883 3.05473 3.08837 3.10295 3.20060 3.60771 3.89716 3.96021 4.28258 4.57555 4.78899 4.89240 4.91272 5.06214 5.08430 5.23812 5.27024 5.32747 5.39213 5.41924 5.63255 5.66428 5.67721 5.84780 5.92931 5.97453 6.14240 6.30759 6.37812 6.41495 6.48738 6.57766 6.64123 6.87462 6.92342 6.95964 7.18865 7.21199 7.41168 7.57629 8.02864 8.55291 9.16862 9.67389 10.15865 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.005359 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.896528 B = 5223.763207 C = 7493.603203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.111 3.889 4 N -0.391 5.391 5 C -0.400 4.400 6 H 0.094 0.906 7 C 0.067 3.933 8 N -0.811 5.811 9 Si 0.904 3.096 10 H -0.245 1.245 11 H -0.277 1.277 12 H -0.267 1.267 13 C 0.487 3.513 14 O -0.599 6.599 15 C -0.052 4.052 16 C -0.114 4.114 17 C 0.096 3.904 18 O -0.302 6.302 19 C 0.022 3.978 20 C 0.121 3.879 21 O -0.307 6.307 22 C 0.045 3.955 23 C -0.011 4.011 24 N -0.010 5.010 25 O -0.171 6.171 26 O -0.167 6.167 27 C -0.026 4.026 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.286 0.714 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 -5.102 -6.220 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.012 4.012 4 N -0.103 5.103 5 C -0.528 4.528 6 H 0.112 0.888 7 C -0.151 4.151 8 N -0.440 5.440 9 Si 0.728 3.272 10 H -0.168 1.168 11 H -0.202 1.202 12 H -0.192 1.192 13 C 0.277 3.723 14 O -0.486 6.486 15 C -0.056 4.056 16 C -0.135 4.135 17 C 0.050 3.950 18 O -0.215 6.215 19 C -0.073 4.073 20 C 0.074 3.926 21 O -0.223 6.223 22 C -0.048 4.048 23 C -0.099 4.099 24 N 0.467 4.533 25 O -0.362 6.362 26 O -0.361 6.361 27 C -0.045 4.045 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.171 0.829 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.429 -5.371 -6.980 9.858 hybrid contribution 0.218 0.272 1.036 1.094 sum 4.648 -5.099 -5.944 9.106 Atomic orbital electron populations 1.21651 0.96263 1.00641 1.01535 1.21830 0.95040 0.98995 1.01472 1.21589 0.81056 0.94849 1.03662 1.42199 1.05101 1.58289 1.04710 1.20215 1.16100 1.21071 0.95383 0.88835 1.27049 0.94871 0.92630 1.00594 1.68829 1.25957 1.12654 1.36510 0.86288 0.81895 0.78674 0.80366 1.16830 1.20215 1.19208 1.17854 0.85142 0.84636 0.84692 1.90623 1.68816 1.58342 1.30863 1.19937 0.95943 0.96222 0.93484 1.21652 0.91988 0.99424 1.00391 1.18701 0.90304 0.95444 0.90584 1.86133 1.35160 1.60049 1.40155 1.23182 0.96504 0.96700 0.90894 1.17483 0.84575 0.97514 0.93064 1.86057 1.12079 1.53668 1.70487 1.22965 0.96584 0.91513 0.93787 1.20419 0.91530 1.03333 0.94577 1.50169 1.02973 0.98966 1.01150 1.96326 1.72278 1.36848 1.30746 1.96233 0.89269 1.69615 1.81004 1.22356 0.88872 0.96048 0.97227 0.92884 0.93016 0.93477 0.92815 0.92157 0.87857 0.92309 0.90204 0.82887 0.87823 0.92188 0.92121 0.88215 0.93612 0.93557 0.78293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.13 -2.50 6.21 -26.74 -0.17 -2.67 16 3 C 0.11 2.41 4.89 -4.04 -0.02 2.39 16 4 N -0.39 -9.00 2.45 -114.49 -0.28 -9.28 16 5 C -0.40 -9.22 6.28 -13.46 -0.08 -9.31 16 6 H 0.09 2.15 6.40 -52.49 -0.34 1.81 16 7 C 0.07 1.52 5.21 -15.16 -0.08 1.45 16 8 N -0.81 -19.04 11.43 56.00 0.64 -18.40 16 9 Si 0.90 18.28 29.66 -169.99 -5.04 13.24 16 10 H -0.24 -5.14 7.11 56.52 0.40 -4.74 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 13 C 0.49 11.08 7.32 -12.52 -0.09 10.99 16 14 O -0.60 -14.63 16.43 5.36 0.09 -14.54 16 15 C -0.05 -1.03 5.49 -104.96 -0.58 -1.60 16 16 C -0.11 -1.92 8.59 -39.04 -0.34 -2.25 16 17 C 0.10 1.55 6.69 -39.18 -0.26 1.28 16 18 O -0.30 -4.19 10.28 -34.37 -0.35 -4.54 16 19 C 0.02 0.21 9.81 101.05 0.99 1.21 16 20 C 0.12 2.14 5.73 -38.89 -0.22 1.92 16 21 O -0.31 -5.19 8.50 -47.82 -0.41 -5.60 16 22 C 0.05 0.60 10.37 101.05 1.05 1.64 16 23 C -0.01 -0.21 6.89 -79.89 -0.55 -0.76 16 24 N -0.01 -0.21 4.98 33.99 0.17 -0.04 16 25 O -0.17 -3.74 19.14 -31.57 -0.60 -4.35 16 26 O -0.17 -3.32 16.58 -39.25 -0.65 -3.97 16 27 C -0.03 -0.52 7.31 -39.18 -0.29 -0.80 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 2.34 5.65 -51.93 -0.29 2.05 16 34 H 0.06 1.33 7.54 -51.93 -0.39 0.94 16 35 H 0.29 6.28 8.26 -40.82 -0.34 5.94 16 36 H 0.15 2.31 6.20 -52.49 -0.33 1.99 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 39 H 0.06 0.55 7.65 -51.93 -0.40 0.16 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.63 7.45 -51.93 -0.39 0.25 16 43 H 0.20 4.41 5.02 -52.49 -0.26 4.14 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -27.93 368.44 -6.46 -34.39 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.31 Total: 5.86 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.27 Total: 1.68 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: 0.53 Total: -27.72 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.93 Total: -32.99 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.04 Total: 13.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.93 -6.46 -34.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265858014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.798 kcal (2) G-P(sol) polarization free energy of solvation -27.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds