Wall clock time and date at job start Tue Mar 31 2020 20:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47226 * 2 1 4 4 N 1.46503 * 109.47136 * 179.97438 * 3 2 1 5 5 C 1.33309 * 119.99980 * 264.03538 * 4 3 2 6 6 H 1.08001 * 119.99646 * 136.85581 * 5 4 3 7 7 C 1.46778 * 120.00013 * 316.85871 * 5 4 3 8 8 N 1.29314 * 120.00103 * 348.77317 * 7 5 4 9 9 Si 1.86809 * 119.99879 * 168.77707 * 7 5 4 10 10 H 1.48494 * 109.47202 * 59.99613 * 9 7 5 11 11 H 1.48496 * 109.46938 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46710 * 299.99569 * 9 7 5 13 13 C 1.34774 * 119.99948 * 84.03829 * 4 3 2 14 14 O 1.21512 * 119.99912 * 4.81369 * 13 4 3 15 15 C 1.47435 * 120.00112 * 184.81906 * 13 4 3 16 16 C 1.39879 * 120.07721 * 146.54796 * 15 13 4 17 17 C 1.38053 * 119.84170 * 180.27130 * 16 15 13 18 18 O 1.36001 * 119.99890 * 179.73466 * 17 16 15 19 19 C 1.42896 * 116.99905 * 359.72431 * 18 17 16 20 20 C 1.39494 * 120.00025 * 359.45875 * 17 16 15 21 21 O 1.35773 * 119.91994 * 180.25064 * 20 17 16 22 22 C 1.42900 * 116.99948 * 90.00177 * 21 20 17 23 23 C 1.38837 * 120.15701 * 0.27442 * 20 17 16 24 24 N 1.48026 * 119.91835 * 179.97438 * 23 20 17 25 25 O 1.31702 * 119.99553 * 179.97438 * 24 23 20 26 26 O 1.31693 * 119.99886 * 359.97438 * 24 23 20 27 27 C 1.37775 * 120.15926 * 359.97438 * 23 20 17 28 28 H 1.09002 * 109.47245 * 300.00289 * 1 2 3 29 29 H 1.08997 * 109.46960 * 59.99883 * 1 2 3 30 30 H 1.08993 * 109.47362 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46850 * 239.99637 * 2 1 3 32 32 H 1.08997 * 109.46960 * 120.00117 * 2 1 3 33 33 H 1.08996 * 109.47502 * 60.00036 * 3 2 1 34 34 H 1.08997 * 109.47247 * 299.99941 * 3 2 1 35 35 H 0.97002 * 119.99401 * 180.02562 * 8 7 5 36 36 H 1.08002 * 120.08223 * 0.02562 * 16 15 13 37 37 H 1.08993 * 109.47192 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47109 * 300.00213 * 19 18 17 39 39 H 1.09000 * 109.47259 * 60.00248 * 19 18 17 40 40 H 1.08999 * 109.47197 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47120 * 299.99440 * 22 21 20 42 42 H 1.08993 * 109.47601 * 59.99794 * 22 21 20 43 43 H 1.07995 * 120.00428 * 179.97438 * 27 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1711 1.5625 1.1491 6 1 5.0320 0.9395 1.3417 7 6 3.7344 2.5414 2.1518 8 7 2.8487 3.4317 1.8434 9 14 4.4581 2.5011 3.8736 10 1 5.9281 2.6970 3.7974 11 1 3.8562 3.5864 4.6890 12 1 4.1656 1.1882 4.5028 13 6 4.1794 1.3210 -1.1600 14 8 3.5755 1.2995 -2.2141 15 6 5.6498 1.2140 -1.1505 16 6 6.3023 0.4362 -2.1127 17 6 7.6791 0.3350 -2.0958 18 8 8.3164 -0.4247 -3.0266 19 6 7.4984 -1.0947 -3.9877 20 6 8.4168 1.0165 -1.1277 21 8 9.7710 0.9198 -1.1158 22 6 10.4969 1.8838 -1.8813 23 6 7.7694 1.7930 -0.1761 24 7 8.5574 2.5135 0.8491 25 8 7.9450 3.2509 1.7523 26 8 9.8708 2.4171 0.8581 27 6 6.3955 1.8945 -0.1837 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 2.5605 4.0789 2.5061 36 1 5.7303 -0.0871 -2.8646 37 1 8.1306 -1.6642 -4.6689 38 1 6.8155 -1.7719 -3.4747 39 1 6.9252 -0.3596 -4.5525 40 1 11.5659 1.6933 -1.7857 41 1 10.2072 1.8083 -2.9294 42 1 10.2715 2.8846 -1.5132 43 1 5.8945 2.4989 0.5580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265858014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:17 Heat of formation + Delta-G solvation = -54.690118 kcal Electronic energy + Delta-G solvation = -30813.093970 eV Core-core repulsion = 26443.405459 eV Total energy + Delta-G solvation = -4369.688511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.34082 -40.77129 -40.19031 -39.16242 -37.98652 -37.14623 -35.52732 -34.70603 -33.71070 -32.64669 -31.59577 -28.76429 -28.35376 -27.56159 -27.32086 -26.43803 -24.27479 -23.37287 -22.50450 -21.48382 -20.46960 -19.48755 -19.12215 -18.68400 -18.22017 -17.78096 -17.61430 -17.31936 -16.86945 -16.61036 -16.32446 -16.24127 -15.80166 -15.67573 -15.60813 -15.26576 -14.58075 -14.34657 -14.21845 -13.68043 -13.58189 -13.44918 -13.30497 -12.96323 -12.82815 -12.67257 -12.51858 -12.50740 -12.46310 -12.35776 -12.33420 -12.13959 -11.96504 -11.88204 -11.56131 -11.29619 -11.08906 -10.74266 -10.57088 -9.70624 -9.58113 -8.53314 -6.08464 -1.91920 -0.58300 -0.12016 -0.06068 1.35933 1.44852 1.47889 1.60180 1.88932 2.18416 2.22657 2.38558 2.65539 2.85691 3.37719 3.47650 3.59550 3.69760 3.78331 4.16300 4.26011 4.29794 4.33095 4.34860 4.36058 4.38420 4.47325 4.53850 4.59649 4.71587 4.73755 4.78946 4.91912 4.93192 5.01778 5.07744 5.18907 5.25088 5.34808 5.50820 5.57504 5.77972 5.82583 6.15307 6.26241 6.78718 7.40354 7.91449 8.42849 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.005359 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.896528 B = 5223.763207 C = 7493.603203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.112 3.888 4 N -0.401 5.401 5 C -0.411 4.411 6 H 0.090 0.910 7 C 0.040 3.960 8 N -0.838 5.838 9 Si 0.954 3.046 10 H -0.261 1.261 11 H -0.270 1.270 12 H -0.261 1.261 13 C 0.480 3.520 14 O -0.622 6.622 15 C -0.071 4.071 16 C -0.091 4.091 17 C 0.113 3.887 18 O -0.301 6.301 19 C 0.009 3.991 20 C 0.136 3.864 21 O -0.319 6.319 22 C 0.038 3.962 23 C -0.020 4.020 24 N -0.009 5.009 25 O -0.229 6.229 26 O -0.129 6.129 27 C -0.032 4.032 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.289 0.711 36 H 0.175 0.825 37 H 0.138 0.862 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.130 0.870 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 -6.983 -7.718 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C -0.011 4.011 4 N -0.113 5.113 5 C -0.539 4.539 6 H 0.107 0.893 7 C -0.175 4.175 8 N -0.468 5.468 9 Si 0.776 3.224 10 H -0.186 1.186 11 H -0.194 1.194 12 H -0.185 1.185 13 C 0.271 3.729 14 O -0.511 6.511 15 C -0.075 4.075 16 C -0.111 4.111 17 C 0.065 3.935 18 O -0.214 6.214 19 C -0.085 4.085 20 C 0.088 3.912 21 O -0.235 6.235 22 C -0.055 4.055 23 C -0.108 4.108 24 N 0.467 4.533 25 O -0.406 6.406 26 O -0.336 6.336 27 C -0.052 4.052 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.192 0.808 37 H 0.156 0.844 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.148 0.852 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.860 -7.200 -8.414 12.529 hybrid contribution 0.053 0.731 1.215 1.418 sum 5.913 -6.469 -7.199 11.342 Atomic orbital electron populations 1.21610 0.93501 1.02410 1.01877 1.21730 0.97398 0.96460 1.00777 1.21574 0.80769 0.96673 1.02049 1.42365 1.05619 1.58447 1.04892 1.20207 1.16555 1.21494 0.95667 0.89255 1.27544 0.95001 0.92274 1.02685 1.68876 1.27104 1.13404 1.37422 0.85567 0.80118 0.78974 0.77742 1.18579 1.19420 1.18545 1.18247 0.86379 0.84004 0.84279 1.90582 1.69763 1.59367 1.31420 1.19720 0.94458 0.98254 0.95065 1.21814 0.92469 0.97772 0.99051 1.18543 0.89556 0.94838 0.90559 1.86170 1.35887 1.59399 1.39969 1.23615 0.97392 0.97015 0.90471 1.17623 0.85396 0.95968 0.92245 1.86031 1.11333 1.54732 1.71422 1.23275 0.97754 0.90238 0.94218 1.20467 0.91242 1.04129 0.94954 1.50306 1.02946 0.98794 1.01236 1.96350 1.72335 1.39445 1.32481 1.96186 0.89590 1.67855 1.80017 1.21964 0.89367 0.96447 0.97422 0.92503 0.92748 0.90951 0.93643 0.92519 0.89051 0.94102 0.89867 0.80805 0.84441 0.91444 0.91289 0.85215 0.91840 0.94428 0.80744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.29 16 2 C -0.13 -4.68 6.21 30.59 0.19 -4.49 16 3 C 0.11 5.03 4.89 86.38 0.42 5.45 16 4 N -0.40 -19.15 2.45 -634.42 -1.55 -20.70 16 5 C -0.41 -19.74 6.28 86.70 0.54 -19.20 16 6 H 0.09 4.29 6.40 -2.91 -0.02 4.27 16 7 C 0.04 1.91 5.21 87.30 0.45 2.37 16 8 N -0.84 -40.91 11.43 23.25 0.27 -40.65 16 9 Si 0.95 38.85 29.66 68.60 2.03 40.88 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 12 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 13 C 0.48 22.39 7.32 86.67 0.63 23.02 16 14 O -0.62 -30.81 16.43 -3.75 -0.06 -30.88 16 15 C -0.07 -2.84 5.49 -20.09 -0.11 -2.95 16 16 C -0.09 -2.89 8.59 22.62 0.19 -2.70 16 17 C 0.11 3.31 6.69 22.53 0.15 3.46 16 18 O -0.30 -7.15 10.28 -79.57 -0.82 -7.97 16 19 C 0.01 0.13 9.81 113.37 1.11 1.24 16 20 C 0.14 4.52 5.73 22.72 0.13 4.65 16 21 O -0.32 -9.82 8.50 -63.48 -0.54 -10.36 16 22 C 0.04 0.87 10.37 113.37 1.18 2.04 16 23 C -0.02 -0.77 6.89 36.41 0.25 -0.52 16 24 N -0.01 -0.38 4.98 -46.37 -0.23 -0.61 16 25 O -0.23 -10.50 19.14 3.51 0.07 -10.43 16 26 O -0.13 -4.94 16.58 10.87 0.18 -4.76 16 27 C -0.03 -1.33 7.31 22.53 0.16 -1.16 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 4.31 5.65 -2.39 -0.01 4.29 16 34 H 0.04 1.93 7.54 -2.39 -0.02 1.91 16 35 H 0.29 13.15 8.26 -92.71 -0.77 12.38 16 36 H 0.17 4.79 6.20 -2.91 -0.02 4.77 16 37 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 39 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 40 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.04 0.93 7.45 -2.39 -0.02 0.91 16 43 H 0.18 8.21 5.02 -2.91 -0.01 8.19 16 Total: -1.00 -61.99 368.44 6.43 -55.56 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.06 Total: 22.00 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.03 Total: 7.92 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -1.52 Total: -61.96 kcal Atomic # 8 Polarization: -63.23 SS G_CDS: -1.17 Total: -64.40 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -61.99 6.43 -55.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265858014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.870 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds