Wall clock time and date at job start Tue Mar 31 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.46838 * 2 1 4 4 C 1.46499 * 119.99725 * 277.51731 * 3 2 1 5 5 C 1.50692 * 109.47122 * 270.00013 * 4 3 2 6 6 H 1.07994 * 120.00586 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00049 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99512 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00329 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47434 * 60.00454 * 9 7 5 11 11 H 1.48498 * 109.47227 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47219 * 300.00288 * 9 7 5 13 13 C 1.34776 * 119.99600 * 97.52616 * 3 2 1 14 14 O 1.21593 * 119.99497 * 185.78627 * 13 3 2 15 15 C 1.47608 * 120.00602 * 5.78216 * 13 3 2 16 16 C 1.39768 * 120.07032 * 134.13148 * 15 13 3 17 17 C 1.38101 * 119.84679 * 179.97438 * 16 15 13 18 18 O 1.36008 * 119.99817 * 179.97438 * 17 16 15 19 19 C 1.42900 * 117.00028 * 0.02826 * 18 17 16 20 20 C 1.39437 * 119.99716 * 0.02562 * 17 16 15 21 21 O 1.35801 * 119.92443 * 179.97438 * 20 17 16 22 22 C 1.42897 * 117.00397 * 270.02164 * 21 20 17 23 23 C 1.38785 * 120.14186 * 0.02562 * 20 17 16 24 24 N 1.48023 * 119.92376 * 179.70076 * 23 20 17 25 25 O 1.21797 * 120.00207 * 179.97438 * 24 23 20 26 26 O 1.21802 * 119.99750 * 0.02562 * 24 23 20 27 27 C 1.37829 * 120.15246 * 359.97438 * 23 20 17 28 28 H 1.09005 * 109.46796 * 69.53015 * 1 2 3 29 29 H 1.09000 * 109.47155 * 189.52646 * 1 2 3 30 30 H 1.08993 * 109.47535 * 309.53440 * 1 2 3 31 31 H 1.08991 * 109.47192 * 239.99805 * 2 1 3 32 32 H 1.08996 * 109.46761 * 119.99702 * 2 1 3 33 33 H 1.08995 * 109.47294 * 30.01046 * 4 3 2 34 34 H 1.09004 * 109.46548 * 150.00444 * 4 3 2 35 35 H 0.97002 * 119.99434 * 179.97438 * 8 7 5 36 36 H 1.08006 * 120.07537 * 0.02562 * 16 15 13 37 37 H 1.09006 * 109.47121 * 299.99842 * 19 18 17 38 38 H 1.09005 * 109.47457 * 59.99567 * 19 18 17 39 39 H 1.08991 * 109.47164 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.47102 * 60.00462 * 22 21 20 41 41 H 1.09000 * 109.47162 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47131 * 300.00742 * 22 21 20 43 43 H 1.08005 * 119.99578 * 179.97438 * 27 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1059 2.1272 -1.2579 5 6 3.4639 1.9135 -1.8750 6 1 4.1891 1.2846 -1.3801 7 6 3.7803 2.5200 -3.0722 8 7 2.8969 3.2854 -3.6751 9 14 5.4634 2.2546 -3.8376 10 1 5.6631 0.8075 -4.1049 11 1 5.5522 3.0107 -5.1125 12 1 6.5133 2.7349 -2.9036 13 6 2.3870 1.9656 1.1572 14 8 2.6918 3.1426 1.1737 15 6 2.4207 1.1769 2.4044 16 6 3.5189 1.2722 3.2638 17 6 3.5454 0.5326 4.4298 18 8 4.6127 0.6226 5.2680 19 6 5.6701 1.5019 4.8798 20 6 2.4784 -0.3071 4.7471 21 8 2.5063 -1.0341 5.8938 22 6 3.0880 -2.3373 5.8218 23 6 1.3886 -0.4023 3.8930 24 7 0.2615 -1.3003 4.2313 25 8 -0.6958 -1.3846 3.4831 26 8 0.2911 -1.9542 5.2585 27 6 1.3559 0.3331 2.7278 28 1 -0.3633 0.3594 -0.9628 29 1 -0.3633 -1.0135 0.1701 30 1 -0.3634 0.6541 0.7925 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.3355 1.7748 -1.9436 34 1 1.9591 3.1893 -1.0613 35 1 3.1197 3.7124 -4.5171 36 1 4.3444 1.9234 3.0169 37 1 6.0769 1.1800 3.9212 38 1 5.2834 2.5169 4.7880 39 1 6.4563 1.4799 5.6344 40 1 4.1269 -2.2543 5.5025 41 1 3.0460 -2.8087 6.8037 42 1 2.5347 -2.9431 5.1042 43 1 0.5067 0.2568 2.0648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267813803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:13 Heat of formation + Delta-G solvation = -63.582574 kcal Electronic energy + Delta-G solvation = -30519.022426 eV Core-core repulsion = 26148.948310 eV Total energy + Delta-G solvation = -4370.074117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.38932 -41.01734 -39.55554 -38.62921 -37.13476 -36.46803 -35.70345 -32.99115 -31.88538 -30.99785 -30.25325 -28.09161 -27.71709 -27.05762 -26.23026 -24.05386 -23.22770 -22.77874 -22.22460 -20.19302 -18.87390 -18.56501 -18.10253 -17.68997 -17.50974 -17.09545 -16.61445 -16.45390 -16.34709 -15.79769 -15.51620 -15.13383 -14.72577 -14.51435 -14.12109 -13.80963 -13.64150 -13.16289 -12.97809 -12.59854 -12.37740 -12.18992 -12.14505 -11.85913 -11.73655 -11.63340 -11.57793 -11.35365 -11.30785 -11.15621 -11.02627 -10.87238 -10.68061 -10.43226 -10.28737 -9.84711 -9.74376 -9.41108 -8.75274 -8.55894 -7.94297 -6.17564 -4.23666 -0.41677 0.39500 1.12787 1.18468 2.51706 2.68393 3.11364 3.22071 3.24963 3.27669 3.31571 3.55200 4.25367 4.27160 4.34097 4.44141 4.53077 4.57308 4.81216 4.84639 4.99531 5.03770 5.10843 5.13748 5.17560 5.18990 5.36560 5.38314 5.46075 5.56576 5.63262 5.72699 5.92754 6.10585 6.22179 6.39219 6.53037 6.84828 6.97600 7.23235 7.30806 7.59191 7.76845 8.05948 8.08423 8.58459 8.81423 9.41680 10.90548 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.003703 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.884161 B = 7560.313524 C = 8882.052669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.093 3.907 3 N -0.580 5.580 4 C 0.245 3.755 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.891 5.891 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.277 1.277 13 C 0.548 3.452 14 O -0.524 6.524 15 C -0.074 4.074 16 C -0.102 4.102 17 C 0.108 3.892 18 O -0.297 6.297 19 C 0.018 3.982 20 C 0.139 3.861 21 O -0.307 6.307 22 C 0.043 3.957 23 C -0.039 4.039 24 N 0.034 4.966 25 O -0.161 6.161 26 O -0.138 6.138 27 C -0.070 4.070 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.266 0.734 36 H 0.161 0.839 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.048 0.952 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -9.800 16.197 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.031 4.031 3 N -0.311 5.311 4 C 0.127 3.873 5 C -0.573 4.573 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.202 1.202 13 C 0.333 3.667 14 O -0.401 6.401 15 C -0.079 4.079 16 C -0.121 4.121 17 C 0.061 3.939 18 O -0.209 6.209 19 C -0.077 4.077 20 C 0.091 3.909 21 O -0.222 6.222 22 C -0.050 4.050 23 C -0.123 4.123 24 N 0.555 4.445 25 O -0.374 6.374 26 O -0.358 6.358 27 C -0.089 4.089 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.178 0.822 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.983 -8.665 16.156 18.440 hybrid contribution 0.861 -0.291 -0.764 1.188 sum 2.844 -8.956 15.392 18.034 Atomic orbital electron populations 1.22356 0.95881 1.02249 1.03007 1.21747 0.94265 0.83996 1.03091 1.48270 1.60917 1.13494 1.08378 1.19407 0.97402 0.92858 0.77673 1.21339 0.99361 1.30502 1.06094 0.92472 1.24923 0.97405 0.94758 0.96783 1.69917 1.34565 1.30920 1.17509 0.86545 0.84033 0.78253 0.78512 1.20182 1.21035 1.20207 1.17762 0.79494 0.86859 0.82627 1.90818 1.48874 1.15003 1.85426 1.20107 0.93676 0.96881 0.97198 1.21683 0.99881 0.98399 0.92184 1.18839 0.88133 0.96672 0.90278 1.86175 1.26878 1.63194 1.44688 1.23306 0.88389 0.93384 1.02597 1.17536 0.90394 0.95228 0.87694 1.86087 1.81005 1.28991 1.26151 1.23047 0.96621 0.81178 1.04202 1.21060 0.90724 1.01765 0.98754 1.43226 1.01283 0.99876 1.00116 1.94559 1.24068 1.70889 1.47887 1.94562 1.85621 1.41790 1.13794 1.21712 1.00736 0.92418 0.94021 0.91066 0.91107 0.92380 0.89322 0.91540 0.94309 0.93355 0.92459 0.82166 0.91832 0.91658 0.87281 0.93218 0.87695 0.93353 0.80551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.14 37.16 0.34 -2.00 16 2 C 0.09 1.43 5.60 -4.04 -0.02 1.40 16 3 N -0.58 -11.48 2.46 -176.27 -0.43 -11.91 16 4 C 0.24 6.00 5.22 -5.20 -0.03 5.97 16 5 C -0.53 -14.25 9.39 -34.44 -0.32 -14.57 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.55 10.74 7.26 -12.44 -0.09 10.65 16 14 O -0.52 -12.28 16.54 5.28 0.09 -12.19 16 15 C -0.07 -1.14 5.08 -104.97 -0.53 -1.67 16 16 C -0.10 -1.36 8.68 -39.06 -0.34 -1.70 16 17 C 0.11 1.35 6.69 -39.19 -0.26 1.08 16 18 O -0.30 -3.25 10.28 -34.40 -0.35 -3.61 16 19 C 0.02 0.14 9.81 101.05 0.99 1.13 16 20 C 0.14 1.84 5.72 -38.93 -0.22 1.62 16 21 O -0.31 -3.93 8.57 -47.90 -0.41 -4.34 16 22 C 0.04 0.40 10.44 101.05 1.05 1.46 16 23 C -0.04 -0.54 6.85 -79.89 -0.55 -1.09 16 24 N 0.03 0.50 4.45 33.99 0.15 0.65 16 25 O -0.16 -2.37 18.44 -29.46 -0.54 -2.91 16 26 O -0.14 -2.01 15.99 -36.52 -0.58 -2.59 16 27 C -0.07 -0.97 6.91 -39.20 -0.27 -1.24 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.76 6.32 -51.93 -0.33 0.44 16 31 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 32 H 0.07 0.90 5.10 -51.93 -0.26 0.64 16 33 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 36 H 0.16 1.98 6.28 -52.48 -0.33 1.65 16 37 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 38 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 43 H 0.18 2.38 3.24 -52.48 -0.17 2.21 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -32.17 367.20 -6.34 -38.51 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.16 Total: -1.02 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.35 Total: 2.70 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.45 Total: -35.86 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.80 Total: -25.64 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.17 -6.34 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267813803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.068 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds