Wall clock time and date at job start Tue Mar 31 2020 22:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.46838 * 2 1 4 4 C 1.46499 * 119.99725 * 277.51731 * 3 2 1 5 5 C 1.50692 * 109.47122 * 270.00013 * 4 3 2 6 6 H 1.07994 * 120.00586 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00049 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99512 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00329 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47434 * 60.00454 * 9 7 5 11 11 H 1.48498 * 109.47227 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47219 * 300.00288 * 9 7 5 13 13 C 1.34776 * 119.99600 * 97.52616 * 3 2 1 14 14 O 1.21593 * 119.99497 * 185.78627 * 13 3 2 15 15 C 1.47608 * 120.00602 * 5.78216 * 13 3 2 16 16 C 1.39768 * 120.07032 * 134.13148 * 15 13 3 17 17 C 1.38101 * 119.84679 * 179.97438 * 16 15 13 18 18 O 1.36008 * 119.99817 * 179.97438 * 17 16 15 19 19 C 1.42900 * 117.00028 * 0.02826 * 18 17 16 20 20 C 1.39437 * 119.99716 * 0.02562 * 17 16 15 21 21 O 1.35801 * 119.92443 * 179.97438 * 20 17 16 22 22 C 1.42897 * 117.00397 * 270.02164 * 21 20 17 23 23 C 1.38785 * 120.14186 * 0.02562 * 20 17 16 24 24 N 1.48023 * 119.92376 * 179.70076 * 23 20 17 25 25 O 1.21797 * 120.00207 * 179.97438 * 24 23 20 26 26 O 1.21802 * 119.99750 * 0.02562 * 24 23 20 27 27 C 1.37829 * 120.15246 * 359.97438 * 23 20 17 28 28 H 1.09005 * 109.46796 * 69.53015 * 1 2 3 29 29 H 1.09000 * 109.47155 * 189.52646 * 1 2 3 30 30 H 1.08993 * 109.47535 * 309.53440 * 1 2 3 31 31 H 1.08991 * 109.47192 * 239.99805 * 2 1 3 32 32 H 1.08996 * 109.46761 * 119.99702 * 2 1 3 33 33 H 1.08995 * 109.47294 * 30.01046 * 4 3 2 34 34 H 1.09004 * 109.46548 * 150.00444 * 4 3 2 35 35 H 0.97002 * 119.99434 * 179.97438 * 8 7 5 36 36 H 1.08006 * 120.07537 * 0.02562 * 16 15 13 37 37 H 1.09006 * 109.47121 * 299.99842 * 19 18 17 38 38 H 1.09005 * 109.47457 * 59.99567 * 19 18 17 39 39 H 1.08991 * 109.47164 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.47102 * 60.00462 * 22 21 20 41 41 H 1.09000 * 109.47162 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47131 * 300.00742 * 22 21 20 43 43 H 1.08005 * 119.99578 * 179.97438 * 27 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1059 2.1272 -1.2579 5 6 3.4639 1.9135 -1.8750 6 1 4.1891 1.2846 -1.3801 7 6 3.7803 2.5200 -3.0722 8 7 2.8969 3.2854 -3.6751 9 14 5.4634 2.2546 -3.8376 10 1 5.6631 0.8075 -4.1049 11 1 5.5522 3.0107 -5.1125 12 1 6.5133 2.7349 -2.9036 13 6 2.3870 1.9656 1.1572 14 8 2.6918 3.1426 1.1737 15 6 2.4207 1.1769 2.4044 16 6 3.5189 1.2722 3.2638 17 6 3.5454 0.5326 4.4298 18 8 4.6127 0.6226 5.2680 19 6 5.6701 1.5019 4.8798 20 6 2.4784 -0.3071 4.7471 21 8 2.5063 -1.0341 5.8938 22 6 3.0880 -2.3373 5.8218 23 6 1.3886 -0.4023 3.8930 24 7 0.2615 -1.3003 4.2313 25 8 -0.6958 -1.3846 3.4831 26 8 0.2911 -1.9542 5.2585 27 6 1.3559 0.3331 2.7278 28 1 -0.3633 0.3594 -0.9628 29 1 -0.3633 -1.0135 0.1701 30 1 -0.3634 0.6541 0.7925 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.3355 1.7748 -1.9436 34 1 1.9591 3.1893 -1.0613 35 1 3.1197 3.7124 -4.5171 36 1 4.3444 1.9234 3.0169 37 1 6.0769 1.1800 3.9212 38 1 5.2834 2.5169 4.7880 39 1 6.4563 1.4799 5.6344 40 1 4.1269 -2.2543 5.5025 41 1 3.0460 -2.8087 6.8037 42 1 2.5347 -2.9431 5.1042 43 1 0.5067 0.2568 2.0648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267813803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:12 Heat of formation + Delta-G solvation = -82.284001 kcal Electronic energy + Delta-G solvation = -30519.833381 eV Core-core repulsion = 26148.948310 eV Total energy + Delta-G solvation = -4370.885071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.49554 -42.11604 -40.91128 -39.52565 -38.30925 -37.58282 -37.26786 -34.95732 -33.00319 -32.29133 -31.48987 -29.43008 -28.63035 -28.26920 -27.28270 -25.58761 -24.64031 -23.95895 -23.44882 -21.42321 -19.98676 -19.81762 -19.18610 -18.79464 -18.67021 -18.54506 -18.17619 -17.65053 -17.42543 -17.16635 -16.52510 -16.30570 -16.10605 -15.97837 -15.38166 -14.96051 -14.71570 -14.40589 -14.36332 -13.90415 -13.70998 -13.50878 -13.34342 -13.13901 -12.88763 -12.76198 -12.68754 -12.59865 -12.57411 -12.44463 -12.42492 -12.28277 -12.19192 -12.00488 -11.77717 -11.33584 -11.07546 -10.81168 -10.64911 -9.75924 -9.63589 -8.24494 -6.39341 -1.50546 -0.70970 0.03283 0.09284 1.30296 1.38682 1.40841 1.48661 1.73324 1.87768 2.11551 2.22675 2.38216 3.02675 3.08797 3.21493 3.41340 3.43419 3.55419 3.91744 3.94645 4.13138 4.25461 4.27443 4.31837 4.33432 4.40170 4.43313 4.56382 4.58021 4.70285 4.73893 4.83715 4.86361 5.00031 5.12455 5.17544 5.31486 5.46835 5.68451 5.73653 6.00766 6.06599 6.46042 6.47524 6.68195 7.04857 7.32088 8.82980 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.003703 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.884161 B = 7560.313524 C = 8882.052669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.089 3.911 3 N -0.584 5.584 4 C 0.260 3.740 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.547 3.453 14 O -0.573 6.573 15 C -0.086 4.086 16 C -0.095 4.095 17 C 0.119 3.881 18 O -0.299 6.299 19 C 0.008 3.992 20 C 0.146 3.854 21 O -0.320 6.320 22 C 0.037 3.963 23 C -0.044 4.044 24 N 0.035 4.965 25 O -0.169 6.169 26 O -0.137 6.137 27 C -0.061 4.061 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.031 0.969 34 H 0.006 0.994 35 H 0.268 0.732 36 H 0.168 0.832 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.138 0.862 40 H 0.061 0.939 41 H 0.128 0.872 42 H 0.046 0.954 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -11.713 17.632 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.033 4.033 3 N -0.314 5.314 4 C 0.140 3.860 5 C -0.586 4.586 6 H 0.076 0.924 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.334 3.666 14 O -0.454 6.454 15 C -0.090 4.090 16 C -0.115 4.115 17 C 0.071 3.929 18 O -0.212 6.212 19 C -0.086 4.086 20 C 0.099 3.901 21 O -0.236 6.236 22 C -0.056 4.056 23 C -0.128 4.128 24 N 0.555 4.445 25 O -0.381 6.381 26 O -0.358 6.358 27 C -0.080 4.080 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.024 0.976 35 H 0.077 0.923 36 H 0.185 0.815 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.064 0.936 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.366 -10.631 17.605 20.840 hybrid contribution 0.457 0.270 -1.070 1.195 sum 3.824 -10.361 16.535 19.884 Atomic orbital electron populations 1.22319 0.94096 1.04068 1.02431 1.22007 0.95713 0.81536 1.04045 1.48222 1.61093 1.14929 1.07125 1.18873 0.96531 0.91114 0.79505 1.21636 1.00124 1.30418 1.06388 0.92443 1.25816 1.01277 0.94343 0.97326 1.70042 1.36628 1.31853 1.17960 0.85487 0.79096 0.78864 0.77507 1.18648 1.20613 1.19962 1.18282 0.78087 0.86559 0.83674 1.90780 1.50947 1.17233 1.86426 1.19569 0.95482 0.98034 0.95927 1.21721 0.99413 0.98253 0.92066 1.18706 0.88539 0.95832 0.89853 1.86196 1.26889 1.63759 1.44319 1.23634 0.88017 0.92874 1.04071 1.17678 0.90112 0.94925 0.87380 1.86062 1.81466 1.30304 1.25764 1.23311 0.96982 0.79549 1.05743 1.21002 0.90850 1.01981 0.98947 1.43266 1.01345 0.99872 1.00051 1.94557 1.24342 1.71160 1.47994 1.94553 1.85637 1.41823 1.13796 1.21564 1.00266 0.91954 0.94252 0.92181 0.88080 0.92375 0.89640 0.89262 0.95083 0.97568 0.92325 0.81462 0.91210 0.91520 0.84424 0.92058 0.85341 0.93567 0.80243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 9.14 71.98 0.66 -3.73 16 2 C 0.09 2.70 5.60 86.38 0.48 3.18 16 3 N -0.58 -23.69 2.46 -829.85 -2.04 -25.73 16 4 C 0.26 13.31 5.22 85.63 0.45 13.76 16 5 C -0.55 -29.79 9.39 25.60 0.24 -29.55 16 6 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.66 5.46 84.66 0.46 1.12 16 8 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 9 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.55 21.97 7.26 86.72 0.63 22.60 16 14 O -0.57 -28.04 16.54 -4.01 -0.07 -28.10 16 15 C -0.09 -2.59 5.08 -20.09 -0.10 -2.69 16 16 C -0.09 -2.42 8.68 22.61 0.20 -2.23 16 17 C 0.12 2.71 6.69 22.53 0.15 2.86 16 18 O -0.30 -5.78 10.28 -79.64 -0.82 -6.60 16 19 C 0.01 0.10 9.81 113.37 1.11 1.21 16 20 C 0.15 3.59 5.72 22.69 0.13 3.72 16 21 O -0.32 -7.41 8.57 -63.81 -0.55 -7.96 16 22 C 0.04 0.59 10.44 113.37 1.18 1.77 16 23 C -0.04 -1.13 6.85 36.41 0.25 -0.88 16 24 N 0.03 0.95 4.45 -46.38 -0.21 0.74 16 25 O -0.17 -4.70 18.44 18.89 0.35 -4.35 16 26 O -0.14 -3.75 15.99 25.63 0.41 -3.34 16 27 C -0.06 -1.63 6.91 22.52 0.16 -1.48 16 28 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.50 6.32 -2.39 -0.02 1.48 16 31 H 0.09 2.64 8.12 -2.39 -0.02 2.62 16 32 H 0.09 2.31 5.10 -2.39 -0.01 2.29 16 33 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.01 0.37 7.35 -2.38 -0.02 0.35 16 35 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.17 3.98 6.28 -2.91 -0.02 3.96 16 37 H 0.07 0.82 7.66 -2.38 -0.02 0.81 16 38 H 0.07 0.85 7.66 -2.38 -0.02 0.84 16 39 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 0.76 7.45 -2.39 -0.02 0.75 16 43 H 0.18 4.64 3.24 -2.91 -0.01 4.63 16 Total: -1.00 -70.82 367.20 6.45 -64.38 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.06 Total: 10.25 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.00 Total: 9.66 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.96 Total: -78.57 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.67 Total: -50.35 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -70.82 6.45 -64.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267813803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.909 kcal (2) G-P(sol) polarization free energy of solvation -70.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds