Wall clock time and date at job start Tue Mar 31 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47187 * 2 1 4 4 C 1.35798 * 116.99643 * 180.02562 * 3 2 1 5 5 C 1.38832 * 119.93064 * 0.27824 * 4 3 2 6 6 C 1.37791 * 120.14597 * 180.27772 * 5 4 3 7 7 N 1.48025 * 119.99911 * 179.72760 * 6 5 4 8 8 O 1.21793 * 119.99920 * 51.24820 * 7 6 5 9 9 O 1.21797 * 119.99754 * 231.26158 * 7 6 5 10 10 C 1.39695 * 120.00656 * 359.69767 * 6 5 4 11 11 C 1.47609 * 120.07590 * 180.02562 * 10 6 5 12 12 O 1.21584 * 119.99619 * 6.64429 * 11 10 6 13 13 N 1.34777 * 120.00529 * 186.64637 * 11 10 6 14 14 C 1.46497 * 120.00197 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47368 * 34.99555 * 14 13 11 16 16 C 1.53002 * 109.47029 * 274.99513 * 14 13 11 17 17 C 1.50702 * 109.47067 * 154.99510 * 14 13 11 18 18 H 1.07997 * 119.99973 * 0.02562 * 17 14 13 19 19 C 1.37883 * 119.99788 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99869 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99710 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.46946 * 59.99924 * 21 19 17 23 23 H 1.48496 * 109.46487 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.46813 * 299.99848 * 21 19 17 25 25 C 1.39735 * 119.85740 * 0.02562 * 10 6 5 26 26 C 1.38134 * 119.85161 * 0.02562 * 25 10 6 27 27 O 1.36005 * 120.00515 * 179.97438 * 26 25 10 28 28 C 1.42895 * 116.99911 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47538 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47038 * 299.99768 * 1 2 3 31 31 H 1.09005 * 109.47550 * 59.99357 * 1 2 3 32 32 H 1.09001 * 109.46329 * 240.00346 * 2 1 3 33 33 H 1.08998 * 109.46897 * 120.00633 * 2 1 3 34 34 H 1.07995 * 119.92934 * 359.97438 * 5 4 3 35 35 H 0.96999 * 119.99503 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47080 * 300.00219 * 16 14 13 37 37 H 1.09004 * 109.46763 * 59.99800 * 16 14 13 38 38 H 1.08995 * 109.46891 * 180.02562 * 16 14 13 39 39 H 0.97001 * 119.99593 * 180.02562 * 20 19 17 40 40 H 1.08007 * 120.07553 * 180.02562 * 25 10 6 41 41 H 1.08999 * 109.47248 * 179.97438 * 28 27 26 42 42 H 1.09000 * 109.47215 * 59.99456 * 28 27 26 43 43 H 1.09003 * 109.46765 * 299.99645 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3526 1.5251 -0.0005 5 6 4.1969 0.4231 -0.0069 6 6 5.5636 0.5983 -0.0017 7 7 6.4608 -0.5791 -0.0024 8 8 6.3075 -1.4609 -0.8283 9 8 7.3521 -0.6660 0.8231 10 6 6.1027 1.8871 0.0036 11 6 7.5666 2.0766 0.0086 12 8 8.3040 1.1177 -0.1137 13 7 8.0857 3.3125 0.1488 14 6 9.5385 3.5005 0.1532 15 1 9.9993 2.7877 -0.5306 16 6 10.0779 3.2731 1.5668 17 6 9.8647 4.9037 -0.2892 18 1 9.0694 5.5872 -0.5474 19 6 11.1786 5.3153 -0.3633 20 7 12.1471 4.4832 -0.0485 21 14 11.5829 7.0549 -0.9111 22 1 10.9548 8.0257 0.0206 23 1 13.0556 7.2454 -0.9067 24 1 11.0597 7.2759 -2.2831 25 6 5.2531 2.9965 0.0042 26 6 3.8839 2.8140 0.0000 27 8 3.0541 3.8916 0.0011 28 6 3.6671 5.1824 0.0060 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7816 -0.5738 -0.0110 35 1 7.4973 4.0774 0.2460 36 1 9.6172 3.9860 2.2506 37 1 9.8419 2.2581 1.8867 38 1 11.1588 3.4135 1.5701 39 1 13.0714 4.7729 -0.1003 40 1 5.6661 3.9945 0.0079 41 1 2.8947 5.9514 0.0059 42 1 4.2892 5.2926 -0.8822 43 1 4.2850 5.2877 0.8978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299429892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:59 Heat of formation + Delta-G solvation = -76.445319 kcal Electronic energy + Delta-G solvation = -29938.969260 eV Core-core repulsion = 25568.337373 eV Total energy + Delta-G solvation = -4370.631887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98641 -40.98069 -39.33238 -39.01552 -37.04474 -36.04771 -34.96770 -32.80739 -32.45155 -31.42922 -30.55593 -28.74857 -28.06534 -26.04107 -25.32127 -24.73181 -23.22397 -22.09699 -21.38872 -19.82703 -19.71288 -18.64843 -18.37994 -17.86318 -17.49926 -16.83626 -16.62880 -16.28015 -15.96666 -15.78519 -15.30565 -15.10053 -14.62462 -14.49813 -13.99602 -13.71200 -13.61353 -13.22570 -13.09111 -12.83801 -12.54460 -12.43931 -11.97741 -11.85608 -11.83793 -11.60900 -11.27420 -11.19591 -11.13459 -11.02605 -10.89196 -10.74827 -10.57439 -10.39980 -10.29590 -9.52790 -9.38041 -9.13946 -8.64038 -8.53094 -8.08693 -6.19010 -4.29962 0.06322 0.39699 1.23235 1.59543 2.53585 2.64678 2.66318 3.19811 3.25168 3.26602 3.56231 3.63639 4.00933 4.25839 4.28977 4.32826 4.44640 4.51863 4.68658 4.75118 4.81640 4.85847 4.88817 4.97150 5.13137 5.17225 5.20401 5.33192 5.36929 5.51149 5.60415 5.70300 6.44113 6.65723 6.76586 6.90579 6.91022 7.07065 7.28175 7.41080 7.57440 7.81883 8.01507 8.06943 8.41355 8.62119 8.85342 9.37090 10.86784 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.003354 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.756727 B = 8347.469631 C =10041.706142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.291 6.291 4 C 0.127 3.873 5 C -0.135 4.135 6 C 0.016 3.984 7 N 0.026 4.974 8 O -0.186 6.186 9 O -0.075 6.075 10 C -0.062 4.062 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.691 5.691 14 C 0.266 3.734 15 H 0.053 0.947 16 C -0.148 4.148 17 C -0.540 4.540 18 H 0.060 0.940 19 C 0.069 3.931 20 N -0.879 5.879 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 C -0.142 4.142 26 C 0.137 3.863 27 O -0.295 6.295 28 C 0.015 3.985 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.158 0.842 35 H 0.386 0.614 36 H 0.026 0.974 37 H 0.020 0.980 38 H 0.092 0.908 39 H 0.267 0.733 40 H 0.162 0.838 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.253 -2.467 1.490 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.205 6.205 4 C 0.079 3.921 5 C -0.155 4.155 6 C -0.067 4.067 7 N 0.555 4.445 8 O -0.392 6.392 9 O -0.313 6.313 10 C -0.067 4.067 11 C 0.313 3.687 12 O -0.396 6.396 13 N -0.340 5.340 14 C 0.165 3.835 15 H 0.071 0.929 16 C -0.207 4.207 17 C -0.578 4.578 18 H 0.078 0.922 19 C -0.136 4.136 20 N -0.516 5.516 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.202 1.202 25 C -0.162 4.162 26 C 0.090 3.910 27 O -0.207 6.207 28 C -0.079 4.079 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.176 0.824 35 H 0.219 0.781 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.180 0.820 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.370 -2.437 1.294 23.532 hybrid contribution 0.465 1.026 -0.253 1.154 sum -22.904 -1.412 1.041 22.971 Atomic orbital electron populations 1.21762 0.91976 1.03153 1.03821 1.23004 0.96654 0.81363 1.01988 1.86196 1.16462 1.29696 1.88119 1.17885 0.83622 0.90006 1.00538 1.20527 0.90317 0.99907 1.04712 1.20510 0.89643 0.85831 1.10714 1.43085 1.00446 1.00946 1.00023 1.94497 1.77558 1.33176 1.33980 1.94611 1.22328 1.82617 1.31715 1.19931 0.96464 0.90257 1.00014 1.17893 0.85617 0.85360 0.79840 1.90931 1.60121 1.39274 1.49227 1.46482 1.11371 1.05974 1.70124 1.18872 0.72491 0.97303 0.94854 0.92933 1.22087 1.04572 0.96954 0.97080 1.21112 0.92630 0.96750 1.47324 0.92180 1.24882 0.96012 0.97875 0.94786 1.69890 0.99929 1.35092 1.46689 0.86489 0.77486 0.83862 0.79149 1.20136 1.21008 1.20175 1.21285 0.90643 0.99878 1.04353 1.18244 0.88650 0.86027 0.98060 1.86219 1.33431 1.13265 1.87795 1.23323 1.00636 0.81550 1.02409 0.90023 0.91301 0.91239 0.91320 0.91583 0.82414 0.78067 0.95439 0.96050 0.88906 0.92328 0.82030 0.87308 0.91684 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.04 0.32 5.46 37.16 0.20 0.52 16 3 O -0.29 -3.04 9.91 -33.77 -0.33 -3.37 16 4 C 0.13 1.48 6.71 -38.93 -0.26 1.22 16 5 C -0.13 -1.67 8.80 -39.53 -0.35 -2.02 16 6 C 0.02 0.26 6.31 -79.56 -0.50 -0.24 16 7 N 0.03 0.49 3.58 34.15 0.12 0.61 16 8 O -0.19 -3.55 19.14 -29.46 -0.56 -4.11 16 9 O -0.07 -1.60 16.11 -37.24 -0.60 -2.20 16 10 C -0.06 -1.01 5.87 -104.97 -0.62 -1.63 16 11 C 0.53 10.95 7.59 -12.44 -0.09 10.86 16 12 O -0.52 -12.82 12.64 -19.29 -0.24 -13.06 16 13 N -0.69 -14.07 5.02 -55.95 -0.28 -14.35 16 14 C 0.27 6.63 2.56 -69.08 -0.18 6.46 16 15 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 16 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 17 C -0.54 -13.83 8.73 -34.44 -0.30 -14.14 16 18 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 20 N -0.88 -24.39 11.32 55.43 0.63 -23.76 16 21 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.14 -1.77 8.50 -39.06 -0.33 -2.10 16 26 C 0.14 1.61 6.69 -39.18 -0.26 1.34 16 27 O -0.29 -3.08 10.28 -34.42 -0.35 -3.44 16 28 C 0.02 0.11 9.81 101.05 0.99 1.10 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.44 7.64 -51.93 -0.40 0.04 16 33 H 0.07 0.41 7.67 -51.93 -0.40 0.01 16 34 H 0.16 1.59 6.27 -52.49 -0.33 1.26 16 35 H 0.39 6.45 6.60 -40.82 -0.27 6.18 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.16 1.66 4.68 -52.48 -0.25 1.41 16 41 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 43 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -33.45 367.45 -7.40 -40.84 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.22 Total: 2.89 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.07 Total: -0.63 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.47 Total: -37.50 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -2.10 Total: -26.18 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.45 -7.40 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299429892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.601 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds