Wall clock time and date at job start Tue Mar 31 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47187 * 2 1 4 4 C 1.35798 * 116.99643 * 180.02562 * 3 2 1 5 5 C 1.38832 * 119.93064 * 0.27824 * 4 3 2 6 6 C 1.37791 * 120.14597 * 180.27772 * 5 4 3 7 7 N 1.48025 * 119.99911 * 179.72760 * 6 5 4 8 8 O 1.21793 * 119.99920 * 51.24820 * 7 6 5 9 9 O 1.21797 * 119.99754 * 231.26158 * 7 6 5 10 10 C 1.39695 * 120.00656 * 359.69767 * 6 5 4 11 11 C 1.47609 * 120.07590 * 180.02562 * 10 6 5 12 12 O 1.21584 * 119.99619 * 6.64429 * 11 10 6 13 13 N 1.34777 * 120.00529 * 186.64637 * 11 10 6 14 14 C 1.46497 * 120.00197 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47368 * 34.99555 * 14 13 11 16 16 C 1.53002 * 109.47029 * 274.99513 * 14 13 11 17 17 C 1.50702 * 109.47067 * 154.99510 * 14 13 11 18 18 H 1.07997 * 119.99973 * 0.02562 * 17 14 13 19 19 C 1.37883 * 119.99788 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99869 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99710 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.46946 * 59.99924 * 21 19 17 23 23 H 1.48496 * 109.46487 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.46813 * 299.99848 * 21 19 17 25 25 C 1.39735 * 119.85740 * 0.02562 * 10 6 5 26 26 C 1.38134 * 119.85161 * 0.02562 * 25 10 6 27 27 O 1.36005 * 120.00515 * 179.97438 * 26 25 10 28 28 C 1.42895 * 116.99911 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47538 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47038 * 299.99768 * 1 2 3 31 31 H 1.09005 * 109.47550 * 59.99357 * 1 2 3 32 32 H 1.09001 * 109.46329 * 240.00346 * 2 1 3 33 33 H 1.08998 * 109.46897 * 120.00633 * 2 1 3 34 34 H 1.07995 * 119.92934 * 359.97438 * 5 4 3 35 35 H 0.96999 * 119.99503 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47080 * 300.00219 * 16 14 13 37 37 H 1.09004 * 109.46763 * 59.99800 * 16 14 13 38 38 H 1.08995 * 109.46891 * 180.02562 * 16 14 13 39 39 H 0.97001 * 119.99593 * 180.02562 * 20 19 17 40 40 H 1.08007 * 120.07553 * 180.02562 * 25 10 6 41 41 H 1.08999 * 109.47248 * 179.97438 * 28 27 26 42 42 H 1.09000 * 109.47215 * 59.99456 * 28 27 26 43 43 H 1.09003 * 109.46765 * 299.99645 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3526 1.5251 -0.0005 5 6 4.1969 0.4231 -0.0069 6 6 5.5636 0.5983 -0.0017 7 7 6.4608 -0.5791 -0.0024 8 8 6.3075 -1.4609 -0.8283 9 8 7.3521 -0.6660 0.8231 10 6 6.1027 1.8871 0.0036 11 6 7.5666 2.0766 0.0086 12 8 8.3040 1.1177 -0.1137 13 7 8.0857 3.3125 0.1488 14 6 9.5385 3.5005 0.1532 15 1 9.9993 2.7877 -0.5306 16 6 10.0779 3.2731 1.5668 17 6 9.8647 4.9037 -0.2892 18 1 9.0694 5.5872 -0.5474 19 6 11.1786 5.3153 -0.3633 20 7 12.1471 4.4832 -0.0485 21 14 11.5829 7.0549 -0.9111 22 1 10.9548 8.0257 0.0206 23 1 13.0556 7.2454 -0.9067 24 1 11.0597 7.2759 -2.2831 25 6 5.2531 2.9965 0.0042 26 6 3.8839 2.8140 0.0000 27 8 3.0541 3.8916 0.0011 28 6 3.6671 5.1824 0.0060 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7816 -0.5738 -0.0110 35 1 7.4973 4.0774 0.2460 36 1 9.6172 3.9860 2.2506 37 1 9.8419 2.2581 1.8867 38 1 11.1588 3.4135 1.5701 39 1 13.0714 4.7729 -0.1003 40 1 5.6661 3.9945 0.0079 41 1 2.8947 5.9514 0.0059 42 1 4.2892 5.2926 -0.8822 43 1 4.2850 5.2877 0.8978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299429892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:58 Heat of formation + Delta-G solvation = -97.554991 kcal Electronic energy + Delta-G solvation = -29939.884644 eV Core-core repulsion = 25568.337373 eV Total energy + Delta-G solvation = -4371.547271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.32577 -42.04381 -40.77080 -39.89929 -38.16163 -37.53762 -36.82386 -34.56582 -33.22378 -32.69250 -31.57916 -30.43732 -28.82811 -27.41410 -27.23810 -25.56464 -24.44436 -23.06339 -22.86530 -21.53603 -20.90398 -19.88098 -19.76475 -19.00950 -18.80125 -17.96223 -17.71357 -17.54293 -17.14670 -17.03503 -16.63760 -16.23659 -16.12632 -15.93152 -15.17864 -14.69570 -14.61464 -14.45179 -14.34249 -13.90122 -13.78168 -13.38426 -13.33321 -13.04692 -12.91286 -12.77920 -12.71107 -12.63585 -12.48722 -12.40336 -12.28562 -12.20303 -12.14744 -12.10987 -11.82895 -11.16865 -11.05786 -10.61827 -10.54954 -9.94661 -9.44876 -8.18690 -6.37775 -1.20557 -0.64102 -0.14232 0.30660 1.45071 1.46627 1.48194 1.55906 1.74120 1.87854 2.06735 2.19642 2.43663 3.00221 3.12038 3.25199 3.36731 3.48355 3.77240 3.94962 3.98478 4.06333 4.11434 4.29219 4.33646 4.38175 4.42610 4.66190 4.72013 4.78348 4.85029 4.90833 4.92293 5.05003 5.21638 5.23975 5.35157 5.49128 5.61146 5.70142 5.81858 6.04255 6.08819 6.47218 6.63682 6.71378 7.18183 7.37034 8.87714 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.003354 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.756727 B = 8347.469631 C =10041.706142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.031 3.969 3 O -0.295 6.295 4 C 0.142 3.858 5 C -0.124 4.124 6 C -0.001 4.001 7 N 0.029 4.971 8 O -0.170 6.170 9 O -0.143 6.143 10 C -0.083 4.083 11 C 0.527 3.473 12 O -0.567 6.567 13 N -0.684 5.684 14 C 0.274 3.726 15 H -0.001 1.001 16 C -0.135 4.135 17 C -0.549 4.549 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.976 3.024 22 H -0.260 1.260 23 H -0.289 1.289 24 H -0.270 1.270 25 C -0.125 4.125 26 C 0.148 3.852 27 O -0.297 6.297 28 C 0.001 3.999 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.182 0.818 35 H 0.406 0.594 36 H 0.044 0.956 37 H 0.011 0.989 38 H 0.069 0.931 39 H 0.266 0.734 40 H 0.185 0.815 41 H 0.134 0.866 42 H 0.073 0.927 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.886 -0.200 1.098 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 O -0.208 6.208 4 C 0.093 3.907 5 C -0.144 4.144 6 C -0.084 4.084 7 N 0.553 4.447 8 O -0.385 6.385 9 O -0.366 6.366 10 C -0.088 4.088 11 C 0.312 3.688 12 O -0.448 6.448 13 N -0.333 5.333 14 C 0.171 3.829 15 H 0.017 0.983 16 C -0.194 4.194 17 C -0.587 4.587 18 H 0.099 0.901 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.800 3.200 22 H -0.184 1.184 23 H -0.215 1.215 24 H -0.195 1.195 25 C -0.145 4.145 26 C 0.100 3.900 27 O -0.209 6.209 28 C -0.093 4.093 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.199 0.801 35 H 0.243 0.757 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.202 0.798 41 H 0.152 0.848 42 H 0.091 0.909 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.001 -0.112 1.002 27.020 hybrid contribution 1.317 0.300 -0.217 1.368 sum -25.684 0.188 0.786 25.697 Atomic orbital electron populations 1.21801 0.90476 1.04492 1.03649 1.23395 0.97901 0.79919 1.03114 1.86232 1.15233 1.31938 1.87364 1.17945 0.84265 0.89755 0.98698 1.20691 0.88468 1.01534 1.03675 1.20623 0.90293 0.84212 1.13296 1.43510 1.00400 1.01589 0.99231 1.94434 1.76901 1.34064 1.33116 1.94618 1.24766 1.83884 1.33307 1.19510 0.93870 0.91637 1.03752 1.18476 0.87543 0.84440 0.78310 1.90909 1.62017 1.40707 1.51141 1.46115 1.09868 1.07012 1.70346 1.18441 0.74844 0.96090 0.93548 0.98315 1.21912 1.03171 0.96777 0.97543 1.21477 0.93373 0.96905 1.46960 0.90130 1.25846 0.95911 1.02131 0.94726 1.70062 1.00257 1.37294 1.47909 0.85346 0.76869 0.78760 0.79058 1.18399 1.21521 1.19483 1.21360 0.90670 0.99472 1.03025 1.18268 0.88279 0.86815 0.96606 1.86251 1.33588 1.14060 1.87049 1.23710 1.01990 0.80237 1.03327 0.87950 0.91450 0.91430 0.90246 0.90405 0.80063 0.75711 0.93651 0.97034 0.91237 0.92479 0.79824 0.84840 0.90872 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 71.98 0.74 -0.34 16 2 C 0.03 0.34 5.46 71.98 0.39 0.73 16 3 O -0.29 -5.15 9.91 -77.27 -0.77 -5.91 16 4 C 0.14 2.89 6.71 22.69 0.15 3.05 16 5 C -0.12 -2.83 8.80 22.31 0.20 -2.63 16 6 C 0.00 -0.04 6.31 36.62 0.23 0.19 16 7 N 0.03 1.13 3.58 -45.87 -0.16 0.97 16 8 O -0.17 -6.58 19.14 18.90 0.36 -6.22 16 9 O -0.14 -6.53 16.11 26.33 0.42 -6.10 16 10 C -0.08 -2.70 5.87 -20.09 -0.12 -2.81 16 11 C 0.53 22.54 7.59 86.72 0.66 23.20 16 12 O -0.57 -29.96 12.64 19.52 0.25 -29.72 16 13 N -0.68 -28.17 5.02 -449.20 -2.25 -30.43 16 14 C 0.27 14.13 2.56 44.25 0.11 14.25 16 15 H 0.00 -0.07 7.58 -2.39 -0.02 -0.08 16 16 C -0.14 -6.93 9.26 71.98 0.67 -6.26 16 17 C -0.55 -28.07 8.73 25.60 0.22 -27.85 16 18 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 19 C 0.01 0.75 5.30 84.66 0.45 1.20 16 20 N -0.92 -52.37 11.32 21.45 0.24 -52.13 16 21 Si 0.98 40.61 29.54 68.60 2.03 42.63 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 23 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 25 C -0.13 -2.86 8.50 22.61 0.19 -2.66 16 26 C 0.15 3.01 6.69 22.53 0.15 3.16 16 27 O -0.30 -5.09 10.28 -79.59 -0.82 -5.91 16 28 C 0.00 0.01 9.81 113.37 1.11 1.12 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.08 0.74 7.64 -2.39 -0.02 0.72 16 33 H 0.08 0.70 7.67 -2.39 -0.02 0.69 16 34 H 0.18 3.17 6.27 -2.91 -0.02 3.15 16 35 H 0.41 13.06 6.60 -92.71 -0.61 12.45 16 36 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 39 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.18 3.20 4.68 -2.91 -0.01 3.19 16 41 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 43 H 0.08 0.63 7.66 -2.39 -0.02 0.61 16 Total: -1.00 -77.23 367.45 4.92 -72.31 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.46 Total: 16.16 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.16 Total: 4.34 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.18 Total: -81.58 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -0.55 Total: -53.86 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -77.23 4.92 -72.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299429892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.245 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds