Wall clock time and date at job start Tue Mar 31 2020 22:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46856 * 2 1 4 4 C 1.46502 * 120.00394 * 269.99920 * 3 2 1 5 5 C 1.50697 * 109.46973 * 270.00347 * 4 3 2 6 6 H 1.07996 * 120.00360 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99895 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00089 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47089 * 90.00286 * 9 7 5 11 11 H 1.48498 * 109.46859 * 210.00211 * 9 7 5 12 12 H 1.48497 * 109.46947 * 330.00079 * 9 7 5 13 13 C 1.34778 * 120.00190 * 89.99951 * 3 2 1 14 14 O 1.21279 * 120.00293 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99928 * 359.97438 * 13 3 2 16 16 O 1.42889 * 109.47302 * 180.02562 * 15 13 3 17 17 C 1.35898 * 117.00141 * 179.97438 * 16 15 13 18 18 C 1.38748 * 120.05641 * 0.02562 * 17 16 15 19 19 C 1.38127 * 119.94894 * 179.97438 * 18 17 16 20 20 C 1.38287 * 120.05011 * 359.72888 * 19 18 17 21 21 N 1.48008 * 119.94193 * 180.29407 * 20 19 18 22 22 O 1.21793 * 119.99952 * 0.25400 * 21 20 19 23 23 O 1.21800 * 120.00024 * 180.24614 * 21 20 19 24 24 C 1.38243 * 120.11182 * 0.54425 * 20 19 18 25 25 C 1.50707 * 119.96776 * 179.72709 * 24 20 19 26 26 O 1.42903 * 109.46442 * 179.72878 * 25 24 20 27 27 C 1.38161 * 120.05903 * 359.45205 * 24 20 19 28 28 H 1.08996 * 109.47642 * 299.99742 * 1 2 3 29 29 H 1.09002 * 109.47110 * 60.00448 * 1 2 3 30 30 H 1.09005 * 109.47186 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46900 * 240.00271 * 2 1 3 32 32 H 1.08993 * 109.46913 * 119.99462 * 2 1 3 33 33 H 1.09000 * 109.46891 * 29.99647 * 4 3 2 34 34 H 1.08998 * 109.47641 * 149.99930 * 4 3 2 35 35 H 0.96999 * 119.99865 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46936 * 59.99441 * 15 13 3 37 37 H 1.09004 * 109.46550 * 300.00394 * 15 13 3 38 38 H 1.08005 * 120.02819 * 359.97438 * 18 17 16 39 39 H 1.07996 * 119.97435 * 180.02562 * 19 18 17 40 40 H 1.08999 * 109.47345 * 59.72948 * 25 24 20 41 41 H 1.08997 * 109.47199 * 299.72766 * 25 24 20 42 42 H 0.96700 * 114.00311 * 60.00230 * 26 25 24 43 43 H 1.08001 * 120.03033 * 180.24638 * 27 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3488 3.1251 -3.6185 9 14 5.9135 2.0969 -3.4168 10 1 5.9776 0.8756 -4.2591 11 1 6.3921 3.2642 -4.2001 12 1 6.7735 1.9181 -2.2194 13 6 2.2429 2.0166 1.1672 14 8 2.6466 3.1602 1.1672 15 6 1.9912 1.3064 2.4724 16 8 2.3002 2.1820 3.5584 17 6 2.1260 1.6927 4.8142 18 6 1.6676 0.3960 4.9974 19 6 1.4919 -0.0993 6.2748 20 6 1.7778 0.6942 7.3706 21 7 1.5949 0.1589 8.7383 22 8 1.1972 -0.9812 8.8978 23 8 1.8421 0.8584 9.7042 24 6 2.2294 1.9884 7.1908 25 6 2.5342 2.8525 8.3874 26 8 2.9874 4.1340 7.9463 27 6 2.4068 2.4885 5.9152 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1384 35 1 3.6746 3.5150 -4.4447 36 1 2.6210 0.4187 2.5302 37 1 0.9431 1.0126 2.5298 38 1 1.4483 -0.2257 4.1419 39 1 1.1354 -1.1087 6.4178 40 1 3.3106 2.3796 8.9887 41 1 1.6325 2.9728 8.9878 42 1 2.3456 4.6131 7.4045 43 1 2.7634 3.4983 5.7752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428075613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:19 Heat of formation + Delta-G solvation = -93.541634 kcal Electronic energy + Delta-G solvation = -28827.334697 eV Core-core repulsion = 24455.961458 eV Total energy + Delta-G solvation = -4371.373239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.52466 -40.95018 -39.45248 -38.30850 -37.06648 -36.64315 -35.55096 -32.98078 -32.17261 -31.83679 -30.36004 -29.34463 -27.52304 -26.51815 -25.91872 -23.27883 -23.12114 -22.92543 -21.97357 -19.61105 -19.13078 -18.78333 -18.62737 -17.90650 -17.44253 -16.87176 -16.72152 -16.42952 -16.21181 -15.62083 -15.32021 -14.97583 -14.69101 -14.47119 -14.21732 -13.99793 -13.73140 -13.61798 -13.26391 -13.06373 -12.51253 -12.26739 -12.19318 -11.89756 -11.80255 -11.71353 -11.56784 -11.45778 -11.35677 -11.31313 -11.06511 -10.92144 -10.79835 -10.68057 -10.25980 -9.79269 -9.70174 -9.23032 -9.17792 -8.55245 -7.94059 -6.16564 -4.22144 -0.42212 0.41735 1.05136 1.14178 2.33095 2.78125 3.00967 3.22400 3.30132 3.33962 3.65527 3.74026 3.88526 3.95185 4.21280 4.34043 4.46355 4.47616 4.61002 4.69545 4.81532 4.90672 4.93904 5.06726 5.09405 5.18543 5.25505 5.36831 5.46460 5.51078 5.51774 5.63337 5.77620 6.00931 6.12151 6.25228 6.61839 6.86870 7.08150 7.23710 7.31655 7.40247 7.78518 8.06948 8.10257 8.66264 8.83936 9.43509 10.91625 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002328 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.627171 B =12022.476636 C =12798.530204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.515 6.515 15 C 0.032 3.968 16 O -0.269 6.269 17 C 0.200 3.800 18 C -0.217 4.217 19 C -0.004 4.004 20 C -0.092 4.092 21 N 0.041 4.959 22 O -0.170 6.170 23 O -0.173 6.173 24 C -0.021 4.021 25 C 0.115 3.885 26 O -0.558 6.558 27 C -0.152 4.152 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.381 0.619 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.543 -7.424 18.618 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.390 6.390 15 C -0.046 4.046 16 O -0.178 6.178 17 C 0.151 3.849 18 C -0.237 4.237 19 C -0.023 4.023 20 C -0.177 4.177 21 N 0.555 4.445 22 O -0.384 6.384 23 O -0.385 6.385 24 C -0.023 4.023 25 C 0.037 3.963 26 O -0.364 6.364 27 C -0.171 4.171 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.172 0.828 39 H 0.175 0.825 40 H 0.142 0.858 41 H 0.104 0.896 42 H 0.229 0.771 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.642 -6.400 18.032 20.254 hybrid contribution 0.268 -0.683 -0.563 0.925 sum -6.374 -7.083 17.470 19.900 Atomic orbital electron populations 1.22252 0.96422 1.01780 1.02544 1.21519 0.93768 0.83941 1.03056 1.48227 1.63633 1.13375 1.07119 1.19363 0.96619 0.93714 0.77361 1.21389 0.96766 1.32398 1.06475 0.92403 1.24934 0.97993 0.94740 0.96323 1.69922 1.35791 1.33151 1.14277 0.86477 0.84433 0.77773 0.78647 1.20573 1.20978 1.19852 1.19544 0.80066 0.87186 0.84084 1.90749 1.44271 1.17412 1.86531 1.23009 1.02320 0.93521 0.85764 1.86285 1.79866 1.40650 1.11042 1.19446 0.88417 0.91398 0.85678 1.21361 1.08264 0.96047 0.98011 1.20784 0.91843 0.99993 0.89701 1.20689 1.18477 0.96461 0.82030 1.43464 0.97672 1.00458 1.02885 1.94537 1.47954 1.03498 1.92368 1.94495 1.54437 1.57432 1.32130 1.20466 0.92253 0.92162 0.97389 1.21646 1.02099 0.81929 0.90620 1.86633 1.46802 1.29914 1.73030 1.20244 1.06281 1.02731 0.87804 0.93219 0.91604 0.91784 0.89215 0.91971 0.94519 0.93656 0.92555 0.88707 0.88803 0.82826 0.82462 0.85788 0.89632 0.77074 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.10 1.33 5.93 -4.04 -0.02 1.31 16 3 N -0.59 -11.08 2.46 -175.06 -0.43 -11.51 16 4 C 0.25 6.02 5.16 -5.19 -0.03 5.99 16 5 C -0.53 -14.29 9.39 -34.44 -0.32 -14.61 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.51 9.51 7.75 -10.98 -0.09 9.43 16 14 O -0.51 -12.36 16.08 -14.35 -0.23 -12.59 16 15 C 0.03 0.40 3.77 36.01 0.14 0.53 16 16 O -0.27 -3.63 9.67 -39.33 -0.38 -4.01 16 17 C 0.20 2.08 6.69 -39.22 -0.26 1.82 16 18 C -0.22 -1.76 9.04 -39.43 -0.36 -2.12 16 19 C 0.00 -0.03 9.55 -39.60 -0.38 -0.41 16 20 C -0.09 -0.90 6.85 -79.93 -0.55 -1.45 16 21 N 0.04 0.46 4.45 33.97 0.15 0.61 16 22 O -0.17 -2.05 18.44 -29.46 -0.54 -2.59 16 23 O -0.17 -1.99 15.41 -29.46 -0.45 -2.44 16 24 C -0.02 -0.19 5.87 -104.64 -0.61 -0.81 16 25 C 0.11 0.95 5.69 36.01 0.20 1.16 16 26 O -0.56 -4.73 12.69 -35.23 -0.45 -5.18 16 27 C -0.15 -1.46 9.16 -39.43 -0.36 -1.82 16 28 H 0.05 0.49 7.22 -51.93 -0.37 0.11 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.06 0.61 6.44 -51.93 -0.33 0.28 16 33 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.10 0.93 6.92 -51.93 -0.36 0.57 16 37 H 0.09 0.85 6.70 -51.93 -0.35 0.50 16 38 H 0.15 0.87 6.30 -52.48 -0.33 0.54 16 39 H 0.16 1.00 7.61 -52.49 -0.40 0.60 16 40 H 0.12 1.08 7.28 -51.93 -0.38 0.70 16 41 H 0.09 0.64 7.32 -51.93 -0.38 0.26 16 42 H 0.38 1.88 8.12 45.56 0.37 2.25 16 43 H 0.16 1.43 6.59 -52.49 -0.35 1.08 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -34.47 370.35 -7.89 -42.36 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.50 Total: -0.69 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.36 Total: -0.81 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.46 Total: -35.72 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -2.06 Total: -26.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.47 -7.89 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428075613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.180 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds