Wall clock time and date at job start Tue Mar 31 2020 21:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47265 * 2 1 4 4 N 1.46900 * 109.46839 * 119.99634 * 2 1 3 5 5 C 1.46901 * 111.00158 * 274.99898 * 4 2 1 6 6 C 1.50704 * 109.46792 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00170 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99460 * 180.02562 * 6 5 4 9 9 C 1.37099 * 119.99763 * 179.97438 * 8 6 5 10 10 H 1.07994 * 119.99739 * 0.02562 * 9 8 6 11 11 C 1.38953 * 120.00048 * 179.97438 * 9 8 6 12 12 N 1.31410 * 119.99637 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99870 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47242 * 90.00425 * 13 11 9 15 15 H 1.48507 * 109.47111 * 210.00044 * 13 11 9 16 16 H 1.48501 * 109.47314 * 330.00058 * 13 11 9 17 17 C 1.50698 * 109.47070 * 239.99813 * 2 1 3 18 18 N 1.30115 * 124.94995 * 285.02681 * 17 2 1 19 19 C 1.35776 * 109.64449 * 179.97438 * 18 17 2 20 20 C 1.39746 * 133.60044 * 180.02562 * 19 18 17 21 21 C 1.36606 * 119.88512 * 180.25155 * 20 19 18 22 22 C 1.38776 * 120.66551 * 359.47204 * 21 20 19 23 23 C 1.37850 * 120.45592 * 0.50822 * 22 21 20 24 24 C 1.38837 * 119.68698 * 359.75784 * 23 22 21 25 25 N 1.36029 * 124.95362 * 105.00150 * 17 2 1 26 26 C 1.46509 * 126.34790 * 359.97438 * 25 17 2 27 27 F 1.39894 * 109.47037 * 300.02254 * 26 25 17 28 28 F 1.39901 * 109.46506 * 60.01954 * 26 25 17 29 29 H 1.09004 * 109.47309 * 60.00129 * 1 2 3 30 30 H 1.09000 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47374 * 300.00384 * 1 2 3 32 32 H 1.00903 * 110.99811 * 151.04000 * 4 2 1 33 33 H 1.09000 * 109.46928 * 299.99968 * 5 4 2 34 34 H 1.08997 * 109.47131 * 60.00400 * 5 4 2 35 35 H 0.96997 * 120.00226 * 359.97438 * 8 6 5 36 36 H 0.97005 * 119.99597 * 179.97438 * 12 11 9 37 37 H 1.08002 * 120.05286 * 359.96477 * 20 19 18 38 38 H 1.08003 * 119.66098 * 179.69893 * 21 20 19 39 39 H 1.08009 * 119.76920 * 180.26527 * 22 21 20 40 40 H 1.07998 * 120.15412 * 179.74076 * 23 22 21 41 41 H 1.08994 * 109.46947 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5884 -0.5215 3.5558 7 8 2.8686 -1.6983 3.4700 8 7 2.7285 0.1207 4.7324 9 6 3.1883 -0.5563 5.8323 10 1 3.4386 -1.6041 5.7557 11 6 3.3333 0.1058 7.0453 12 7 3.0292 1.3808 7.1382 13 14 3.9605 -0.8165 8.5437 14 1 5.4415 -0.7223 8.5989 15 1 3.3803 -0.2174 9.7724 16 1 3.5583 -2.2430 8.4511 17 6 2.0323 -0.7104 -1.2304 18 7 2.0201 -1.9999 -1.4038 19 6 2.5437 -2.3020 -2.6196 20 6 2.7655 -3.5010 -3.3024 21 6 3.3300 -3.4815 -4.5462 22 6 3.6774 -2.2798 -5.1471 23 6 3.4674 -1.0849 -4.4925 24 6 2.8997 -1.0854 -3.2255 25 7 2.5642 -0.0971 -2.3219 26 6 2.7458 1.3451 -2.5052 27 9 1.5035 1.9844 -2.4333 28 9 3.5842 1.8407 -1.5009 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.9172 -1.1206 1.0288 33 1 2.7588 1.0462 2.1182 34 1 1.0870 0.6164 2.5525 35 1 2.5040 1.0619 4.8011 36 1 3.1301 1.8430 7.9851 37 1 2.4953 -4.4416 -2.8455 38 1 3.5043 -4.4105 -5.0687 39 1 4.1189 -2.2810 -6.1328 40 1 3.7434 -0.1528 -4.9630 41 1 3.1955 1.5336 -3.4800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507211447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:11 Heat of formation + Delta-G solvation = -70.868790 kcal Electronic energy + Delta-G solvation = -28871.186951 eV Core-core repulsion = 24422.002116 eV Total energy + Delta-G solvation = -4449.184835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.44396 -48.52228 -43.33646 -40.25262 -38.74116 -37.28390 -35.93542 -35.03857 -33.32561 -32.25706 -31.33603 -29.84260 -28.24159 -27.26708 -26.24193 -24.72959 -23.39812 -22.53597 -21.28127 -21.16421 -19.96827 -19.46967 -19.01878 -18.94879 -18.06429 -17.79657 -17.13921 -16.57524 -16.43108 -16.28338 -16.11817 -15.97804 -15.50054 -15.32540 -15.29427 -14.94543 -14.85513 -14.69472 -14.54633 -14.25793 -13.58092 -13.53456 -13.45092 -13.39919 -12.97385 -12.92250 -12.89426 -12.70839 -12.43418 -12.34447 -12.31767 -12.12776 -11.93335 -11.52980 -11.06478 -10.40765 -10.03752 -9.55272 -9.52677 -9.26195 -8.48168 -5.96966 -0.20006 0.39663 0.81765 1.36878 1.40752 1.51386 1.54251 2.01606 2.26235 2.35733 2.71575 2.81189 2.82318 3.03482 3.14909 3.18682 3.40898 3.48820 3.78884 3.92139 4.05254 4.10810 4.23286 4.33842 4.35722 4.38654 4.42346 4.50188 4.68391 4.74215 4.80733 5.01729 5.19968 5.30745 5.39652 5.45576 5.51967 5.60070 5.76349 5.88695 6.01267 6.09356 6.58034 6.70093 7.10691 7.52939 8.08895 8.69299 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.002570 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.268715 B =10893.184974 C =11722.634286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.166 3.834 3 H 0.073 0.927 4 N -0.660 5.660 5 C 0.063 3.937 6 C 0.439 3.561 7 O -0.623 6.623 8 N -0.570 5.570 9 C -0.335 4.335 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.993 3.007 14 H -0.270 1.270 15 H -0.268 1.268 16 H -0.274 1.274 17 C 0.278 3.722 18 N -0.491 5.491 19 C 0.008 3.992 20 C -0.084 4.084 21 C -0.117 4.117 22 C -0.086 4.086 23 C -0.113 4.113 24 C 0.046 3.954 25 N -0.542 5.542 26 C 0.475 3.525 27 F -0.184 7.184 28 F -0.191 7.191 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.343 0.657 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.398 0.602 36 H 0.278 0.722 37 H 0.127 0.873 38 H 0.161 0.839 39 H 0.174 0.826 40 H 0.163 0.837 41 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 3.336 -29.584 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 H 0.091 0.909 4 N -0.293 5.293 5 C -0.069 4.069 6 C 0.226 3.774 7 O -0.509 6.509 8 N -0.207 5.207 9 C -0.464 4.464 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.817 3.183 14 H -0.196 1.196 15 H -0.193 1.193 16 H -0.199 1.199 17 C 0.012 3.988 18 N -0.209 5.209 19 C -0.108 4.108 20 C -0.103 4.103 21 C -0.137 4.137 22 C -0.105 4.105 23 C -0.134 4.134 24 C -0.059 4.059 25 N -0.245 5.245 26 C 0.340 3.660 27 F -0.165 7.165 28 F -0.173 7.173 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.179 0.821 39 H 0.192 0.808 40 H 0.180 0.820 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.877 1.992 -28.745 28.827 hybrid contribution 1.017 1.125 0.806 1.717 sum 0.140 3.118 -27.939 28.113 Atomic orbital electron populations 1.21759 0.90883 1.02971 1.03108 1.20138 0.97865 0.93959 0.82527 0.90942 1.60145 1.34949 1.31725 1.02491 1.21671 1.03042 0.93423 0.88733 1.20697 0.83425 0.87904 0.85352 1.90513 1.56581 1.18277 1.85519 1.41881 1.58195 1.12601 1.08040 1.19656 1.42243 0.95943 0.88575 0.90491 1.26040 0.97151 0.96653 1.01314 1.69670 1.48410 1.09650 1.28227 0.84928 0.78504 0.77994 0.76909 1.19563 1.19303 1.19916 1.23728 0.96006 0.88534 0.90512 1.70452 1.20889 1.12143 1.17408 1.19682 1.04010 0.95054 0.92060 1.20361 0.99443 0.95108 0.95394 1.21126 0.98260 1.00483 0.93781 1.21465 0.97685 0.90334 1.00969 1.20477 1.01327 1.01601 0.89971 1.19137 1.04865 0.87232 0.94641 1.46630 1.54519 1.07132 1.16231 1.21984 0.76561 0.73825 0.93593 1.93126 1.45004 1.81118 1.97244 1.93130 1.71220 1.86969 1.65960 0.90780 0.92539 0.90117 0.83850 0.91303 0.86735 0.76829 0.91207 0.85466 0.82115 0.80845 0.81977 0.77394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.40 71.98 0.68 -2.66 16 2 C 0.17 4.82 2.87 44.17 0.13 4.95 16 3 H 0.07 1.88 6.29 -2.38 -0.01 1.86 16 4 N -0.66 -24.29 5.90 -499.46 -2.95 -27.24 16 5 C 0.06 2.33 5.97 85.56 0.51 2.84 16 6 C 0.44 22.02 7.82 87.66 0.69 22.70 16 7 O -0.62 -36.78 15.78 -3.04 -0.05 -36.83 16 8 N -0.57 -30.19 5.29 -306.99 -1.62 -31.81 16 9 C -0.33 -19.57 9.68 84.04 0.81 -18.75 16 10 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 11 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 12 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 13 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 C 0.28 8.26 6.28 137.92 0.87 9.12 16 18 N -0.49 -16.81 11.24 -179.97 -2.02 -18.83 16 19 C 0.01 0.22 7.23 39.45 0.29 0.51 16 20 C -0.08 -1.86 10.05 22.25 0.22 -1.64 16 21 C -0.12 -1.60 9.96 22.02 0.22 -1.38 16 22 C -0.09 -0.86 10.03 22.31 0.22 -0.63 16 23 C -0.11 -1.41 9.89 22.32 0.22 -1.19 16 24 C 0.05 1.00 6.87 38.86 0.27 1.27 16 25 N -0.54 -12.20 3.06 -523.69 -1.60 -13.80 16 26 C 0.47 7.03 5.58 127.77 0.71 7.74 16 27 F -0.18 -3.04 17.30 44.97 0.78 -2.26 16 28 F -0.19 -3.69 16.59 44.97 0.75 -2.95 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.92 7.45 -2.38 -0.02 1.90 16 32 H 0.34 14.10 8.05 -89.69 -0.72 13.38 16 33 H 0.07 2.22 8.06 -2.39 -0.02 2.20 16 34 H 0.11 3.67 7.44 -2.39 -0.02 3.65 16 35 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 36 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 37 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 40 H 0.16 0.67 7.76 -2.91 -0.02 0.65 16 41 H 0.21 0.75 7.62 -2.39 -0.02 0.73 16 Total: -1.00 -80.23 362.70 1.54 -78.69 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.34 Total: 36.36 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 6.30 Total: 22.72 kcal Atomic # 7 Polarization: -133.73 SS G_CDS: -7.92 Total: -141.64 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.05 Total: -36.83 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.52 Total: -5.21 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -80.23 1.54 -78.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507211447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.819 kcal (2) G-P(sol) polarization free energy of solvation -80.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds