Wall clock time and date at job start Tue Mar 31 2020 22:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34813 * 116.99857 * 2 1 4 4 O 1.21532 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.47181 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.38004 * 125.90150 * 180.02562 * 5 3 2 7 7 C 1.39404 * 107.46217 * 179.73945 * 6 5 3 8 8 C 1.38010 * 107.45948 * 0.35958 * 7 6 5 9 9 C 1.47179 * 125.90003 * 179.90174 * 8 7 6 10 10 O 1.21531 * 119.99696 * 359.69168 * 9 8 7 11 11 O 1.34813 * 119.99822 * 179.69064 * 9 8 7 12 12 C 1.45204 * 116.99679 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46942 * 30.00601 * 12 11 9 14 14 C 1.52995 * 109.47444 * 270.00233 * 12 11 9 15 15 C 1.50698 * 109.46692 * 149.99729 * 12 11 9 16 16 O 1.21280 * 120.00203 * 16.03777 * 15 12 11 17 17 N 1.34779 * 120.00030 * 196.02557 * 15 12 11 18 18 C 1.46499 * 119.99988 * 5.37097 * 17 15 12 19 19 C 1.46498 * 120.00081 * 185.37169 * 17 15 12 20 20 C 1.50702 * 109.47304 * 90.00354 * 19 17 15 21 21 H 1.08001 * 119.99689 * 359.97438 * 20 19 17 22 22 C 1.37874 * 119.99989 * 180.02562 * 20 19 17 23 23 N 1.31519 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99902 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46885 * 60.00516 * 24 22 20 26 26 H 1.48503 * 109.47130 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47200 * 299.99818 * 24 22 20 28 28 N 1.36754 * 125.89683 * 359.97438 * 5 3 2 29 29 H 0.97004 * 125.66568 * 0.02562 * 28 5 3 30 30 H 1.09003 * 109.47248 * 299.99966 * 1 2 3 31 31 H 1.08998 * 109.47201 * 60.00586 * 1 2 3 32 32 H 1.09006 * 109.46745 * 180.02562 * 1 2 3 33 33 H 1.08006 * 126.27009 * 359.96758 * 6 5 3 34 34 H 1.08005 * 126.27054 * 180.25332 * 7 6 5 35 35 H 1.09000 * 109.46932 * 186.13764 * 14 12 11 36 36 H 1.08999 * 109.47044 * 66.13818 * 14 12 11 37 37 H 1.09005 * 109.47082 * 306.14178 * 14 12 11 38 38 H 1.09006 * 109.47084 * 84.81792 * 18 17 15 39 39 H 1.08994 * 109.47590 * 204.81862 * 18 17 15 40 40 H 1.09006 * 109.47202 * 324.82157 * 18 17 15 41 41 H 1.09001 * 109.47134 * 210.00388 * 19 17 15 42 42 H 1.09001 * 109.47100 * 330.00088 * 19 17 15 43 43 H 0.96998 * 120.00236 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4021 2.2204 -0.0005 5 6 3.5338 1.2783 -0.0006 6 6 4.2833 2.4371 -0.0001 7 6 5.6271 2.0661 0.0051 8 6 5.6759 0.6868 -0.0005 9 6 6.8978 -0.1335 0.0002 10 8 7.9890 0.4017 0.0004 11 8 6.8067 -1.4786 0.0006 12 6 8.0530 -2.2237 0.0007 13 1 8.8215 -1.6461 0.5144 14 6 8.4906 -2.4858 -1.4417 15 6 7.8527 -3.5373 0.7115 16 8 6.7313 -3.9521 0.9146 17 7 8.9198 -4.2512 1.1214 18 6 10.2690 -3.6974 0.9823 19 6 8.7307 -5.5811 1.7061 20 6 8.7719 -6.6200 0.6153 21 1 8.9235 -6.3196 -0.4110 22 6 8.6152 -7.9538 0.9273 23 7 8.4301 -8.3195 2.1769 24 14 8.6657 -9.2415 -0.4250 25 1 9.9808 -9.1861 -1.1124 26 1 8.4740 -10.5896 0.1677 27 1 7.5830 -8.9727 -1.4051 28 7 4.3926 0.2141 -0.0006 29 1 4.1344 -0.7210 -0.0007 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.8992 3.4465 0.0002 34 1 6.4747 2.7354 0.0106 35 1 9.3650 -3.1365 -1.4435 36 1 8.7404 -1.5403 -1.9231 37 1 7.6782 -2.9671 -1.9862 38 1 10.4917 -3.0631 1.8404 39 1 10.9926 -4.5111 0.9344 40 1 10.3264 -3.1058 0.0685 41 1 9.5254 -5.7780 2.4257 42 1 7.7653 -5.6222 2.2107 43 1 8.3202 -9.2579 2.3965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796345221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:03 Heat of formation + Delta-G solvation = -173.259664 kcal Electronic energy + Delta-G solvation = -28779.172980 eV Core-core repulsion = 24404.342908 eV Total energy + Delta-G solvation = -4374.830072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.82981 -41.78054 -41.05272 -40.35326 -37.74755 -37.66740 -36.70528 -34.87128 -33.21937 -32.42770 -31.42639 -29.71650 -28.74736 -27.59542 -26.41487 -25.66196 -24.28699 -23.06404 -21.83790 -21.20042 -20.49036 -20.33703 -19.03585 -18.69784 -18.32681 -17.97712 -17.66134 -17.49414 -17.35531 -16.89235 -16.29910 -16.17064 -15.50467 -15.41554 -15.02756 -14.80018 -14.74313 -14.33470 -14.20104 -14.12439 -13.95685 -13.93280 -13.66677 -13.56923 -13.33450 -13.14145 -13.13250 -12.86724 -12.68507 -12.53081 -12.20790 -12.17266 -12.03868 -11.93848 -11.92135 -11.74415 -10.67130 -10.64743 -10.35101 -9.77598 -9.53893 -8.23707 -6.38741 -0.49788 0.65094 1.02184 1.37631 1.37953 1.41818 1.48514 1.56843 1.77098 1.78721 1.89196 2.29190 2.41880 3.06681 3.34958 3.43295 3.59616 3.73822 3.79906 3.98991 4.00551 4.22146 4.28458 4.29935 4.49403 4.58217 4.59817 4.64817 4.67539 4.85972 4.90706 4.95300 5.07122 5.08634 5.09377 5.19784 5.23367 5.50005 5.53472 5.76744 5.92604 6.01990 6.36491 6.45234 6.57580 6.70140 7.16984 7.34460 8.83693 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002534 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.185427 B =11048.090247 C =12539.250284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.538 3.462 4 O -0.510 6.510 5 C -0.003 4.003 6 C -0.107 4.107 7 C -0.102 4.102 8 C -0.002 4.002 9 C 0.535 3.465 10 O -0.499 6.499 11 O -0.344 6.344 12 C 0.084 3.916 13 H 0.127 0.873 14 C -0.160 4.160 15 C 0.501 3.499 16 O -0.578 6.578 17 N -0.599 5.599 18 C 0.065 3.935 19 C 0.258 3.742 20 C -0.545 4.545 21 H 0.059 0.941 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.259 1.259 26 H -0.281 1.281 27 H -0.276 1.276 28 N -0.495 5.495 29 H 0.437 0.563 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.185 0.815 34 H 0.186 0.814 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.030 0.970 42 H 0.000 1.000 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 21.292 -6.952 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.383 3.617 4 O -0.399 6.399 5 C -0.119 4.119 6 C -0.132 4.132 7 C -0.127 4.127 8 C -0.119 4.119 9 C 0.380 3.620 10 O -0.387 6.387 11 O -0.261 6.261 12 C 0.026 3.974 13 H 0.145 0.855 14 C -0.218 4.218 15 C 0.288 3.712 16 O -0.458 6.458 17 N -0.331 5.331 18 C -0.076 4.076 19 C 0.138 3.862 20 C -0.583 4.583 21 H 0.077 0.923 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.792 3.208 25 H -0.183 1.183 26 H -0.206 1.206 27 H -0.202 1.202 28 N -0.092 5.092 29 H 0.278 0.722 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.203 0.797 34 H 0.203 0.797 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.018 0.982 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.568 21.115 -6.712 23.110 hybrid contribution -0.410 -1.648 -0.148 1.705 sum -6.978 19.468 -6.860 21.788 Atomic orbital electron populations 1.23652 0.73276 1.05994 1.03300 1.86582 1.26233 1.31719 1.83860 1.19961 0.86909 0.82055 0.72746 1.90885 1.65612 1.36411 1.46953 1.19736 0.86885 0.88765 1.16555 1.21610 0.91144 0.97947 1.02514 1.21620 0.98380 0.90615 1.02099 1.19593 0.81628 0.93594 1.17078 1.20165 0.88410 0.80628 0.72788 1.90863 1.27830 1.73262 1.46736 1.86667 1.36505 1.19156 1.83728 1.22626 0.85054 0.89559 1.00159 0.85506 1.22200 1.03217 1.04816 0.91527 1.20596 0.84810 0.86283 0.79495 1.90656 1.25433 1.72184 1.57506 1.48060 1.07198 1.18033 1.59840 1.22181 0.82101 1.00234 1.03130 1.18869 0.95954 0.77994 0.93424 1.21671 1.50328 0.92033 0.94283 0.92252 1.25863 0.94334 1.00819 0.98065 1.70046 1.49625 1.17841 1.19296 0.85462 0.79197 0.77440 0.78700 1.18305 1.20604 1.20193 1.42100 1.04688 1.10128 1.52308 0.72237 0.91169 0.90964 0.85326 0.79748 0.79716 0.88332 0.88399 0.91692 0.90812 0.90132 0.88857 0.95197 0.98182 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.37 -6.99 10.58 -57.25 -0.61 -7.60 16 3 C 0.54 11.23 7.95 70.17 0.56 11.78 16 4 O -0.51 -12.20 16.67 19.73 0.33 -11.87 16 5 C 0.00 -0.05 7.07 40.67 0.29 0.24 16 6 C -0.11 -1.74 10.60 22.50 0.24 -1.50 16 7 C -0.10 -1.73 10.60 22.50 0.24 -1.49 16 8 C 0.00 -0.05 7.07 40.67 0.29 0.24 16 9 C 0.54 14.00 7.93 70.17 0.56 14.56 16 10 O -0.50 -13.60 16.13 19.73 0.32 -13.28 16 11 O -0.34 -10.56 9.48 -51.01 -0.48 -11.04 16 12 C 0.08 2.54 2.14 29.85 0.06 2.61 16 13 H 0.13 3.31 6.32 -2.39 -0.02 3.29 16 14 C -0.16 -3.94 9.19 71.98 0.66 -3.28 16 15 C 0.50 20.88 6.95 87.66 0.61 21.49 16 16 O -0.58 -30.02 16.13 15.23 0.25 -29.77 16 17 N -0.60 -24.75 2.86 -851.13 -2.43 -27.18 16 18 C 0.07 1.84 9.79 127.77 1.25 3.10 16 19 C 0.26 13.63 5.18 85.63 0.44 14.07 16 20 C -0.54 -30.36 9.39 25.60 0.24 -30.12 16 21 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 22 C 0.01 0.47 5.46 84.65 0.46 0.93 16 23 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 24 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 N -0.50 -10.29 6.11 -172.65 -1.05 -11.34 16 29 H 0.44 8.98 8.96 -92.70 -0.83 8.15 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.10 2.23 6.33 -2.39 -0.02 2.22 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.08 2.32 8.03 -2.39 -0.02 2.30 16 40 H 0.09 2.02 4.92 -2.38 -0.01 2.00 16 41 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 42 H 0.00 0.00 7.36 -2.39 -0.02 -0.01 16 43 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -77.33 383.06 5.96 -71.37 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.24 Total: 15.84 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 7.10 Total: 34.19 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -3.20 Total: -93.49 kcal Atomic # 8 Polarization: -73.37 SS G_CDS: -0.20 Total: -73.56 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -77.33 5.96 -71.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796345221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.893 kcal (2) G-P(sol) polarization free energy of solvation -77.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds