Wall clock time and date at job start Tue Mar 31 2020 21:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47393 * 2 1 4 4 O 1.42902 * 109.47019 * 119.99652 * 2 1 3 5 5 C 1.35904 * 117.00057 * 155.07038 * 4 2 1 6 6 C 1.38747 * 120.05390 * 5.16966 * 5 4 2 7 7 C 1.38132 * 119.94260 * 179.97438 * 6 5 4 8 8 C 1.38279 * 120.05450 * 359.97438 * 7 6 5 9 9 N 1.48009 * 119.94324 * 180.02562 * 8 7 6 10 10 O 1.21805 * 119.99841 * 0.02562 * 9 8 7 11 11 O 1.21800 * 120.00209 * 179.97438 * 9 8 7 12 12 C 1.38242 * 120.11254 * 359.79604 * 8 7 6 13 13 C 1.38162 * 120.05706 * 0.45572 * 12 8 7 14 14 C 1.50702 * 120.03074 * 179.79588 * 13 12 8 15 15 N 1.46497 * 109.47121 * 257.69435 * 14 13 12 16 16 C 1.36939 * 120.00182 * 84.06599 * 15 14 13 17 17 H 1.07999 * 119.99581 * 347.59776 * 16 15 14 18 18 C 1.38813 * 120.00416 * 167.59821 * 16 15 14 19 19 N 1.31619 * 119.99558 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00121 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47269 * 89.99927 * 20 18 16 22 22 H 1.48501 * 109.47001 * 209.99616 * 20 18 16 23 23 H 1.48496 * 109.47387 * 329.99677 * 20 18 16 24 24 C 1.46501 * 120.00211 * 264.06886 * 15 14 13 25 25 C 1.50703 * 109.47076 * 263.21427 * 24 15 14 26 26 O 1.20827 * 119.99898 * 5.34463 * 25 24 15 27 27 O 1.34228 * 120.00370 * 185.33527 * 25 24 15 28 28 H 1.08999 * 109.47062 * 304.91777 * 1 2 3 29 29 H 1.09001 * 109.46545 * 64.91906 * 1 2 3 30 30 H 1.09000 * 109.46873 * 184.92119 * 1 2 3 31 31 H 1.08996 * 109.47217 * 239.99454 * 2 1 3 32 32 H 1.09006 * 109.46837 * 299.99903 * 3 2 1 33 33 H 1.08996 * 109.47385 * 59.99556 * 3 2 1 34 34 H 1.09001 * 109.47468 * 180.02562 * 3 2 1 35 35 H 1.07999 * 120.03353 * 0.02562 * 6 5 4 36 36 H 1.08002 * 119.96945 * 180.02562 * 7 6 5 37 37 H 1.08008 * 119.97396 * 180.23222 * 12 8 7 38 38 H 1.08997 * 109.47203 * 137.69675 * 14 13 12 39 39 H 1.08998 * 109.46903 * 17.69030 * 14 13 12 40 40 H 0.96999 * 119.99686 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46968 * 23.21444 * 24 15 14 42 42 H 1.09002 * 109.47724 * 143.21862 * 24 15 14 43 43 H 0.96699 * 117.00192 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2473 -1.2235 1.0985 6 6 4.0338 -1.0259 -0.0273 7 6 5.2950 -1.5854 -0.0941 8 6 5.7739 -2.3414 0.9600 9 7 7.1258 -2.9394 0.8860 10 8 7.8156 -2.7649 -0.1026 11 8 7.5490 -3.6051 1.8141 12 6 4.9940 -2.5358 2.0847 13 6 3.7299 -1.9827 2.1543 14 6 2.8784 -2.1988 3.3789 15 7 1.8693 -3.2227 3.0974 16 6 2.1862 -4.5491 3.2223 17 1 3.2178 -4.8499 3.3301 18 6 1.1815 -5.5069 3.2105 19 7 -0.0757 -5.1402 3.0797 20 14 1.6140 -7.3162 3.3802 21 1 1.6139 -7.6925 4.8166 22 1 0.6105 -8.1352 2.6539 23 1 2.9612 -7.5592 2.8049 24 6 0.5210 -2.8278 2.6822 25 6 -0.3928 -2.8240 3.8806 26 8 0.0568 -3.0260 4.9838 27 8 -1.7061 -2.5960 3.7226 28 1 -0.3633 0.5882 0.8427 29 1 -0.3632 0.4356 -0.9308 30 1 -0.3633 -1.0239 0.0882 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 3.6607 -0.4344 -0.8503 36 1 5.9077 -1.4315 -0.9701 37 1 5.3718 -3.1236 2.9083 38 1 2.3838 -1.2652 3.6468 39 1 3.5081 -2.5269 4.2059 40 1 -0.7778 -5.8094 3.0718 41 1 0.5529 -1.8292 2.2465 42 1 0.1467 -3.5353 1.9423 43 1 -2.2521 -2.6031 4.5207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827058695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:40 Heat of formation + Delta-G solvation = -78.706294 kcal Electronic energy + Delta-G solvation = -30858.035599 eV Core-core repulsion = 26487.305669 eV Total energy + Delta-G solvation = -4370.729930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.91489 -40.57720 -38.60080 -37.95743 -36.30828 -35.87556 -34.35421 -33.51833 -32.34237 -30.95901 -30.45691 -27.60760 -27.37821 -26.18126 -25.79632 -23.47631 -22.71630 -21.33164 -21.01079 -20.03357 -18.62796 -18.43194 -18.30793 -17.26368 -16.92292 -16.63183 -16.07147 -15.76375 -15.34518 -14.99996 -14.81333 -14.48395 -14.03523 -13.91148 -13.50014 -13.46552 -13.28837 -13.07796 -12.80621 -12.53150 -12.43408 -12.08331 -11.78499 -11.48364 -11.43929 -11.31582 -11.07026 -11.04936 -10.96128 -10.91076 -10.88075 -10.79834 -10.47913 -10.19649 -10.09089 -9.98723 -9.23149 -9.13328 -8.67821 -8.48993 -7.24424 -5.95967 -3.40074 0.14370 1.08604 1.62532 1.70249 2.95945 3.31604 3.37548 3.38413 3.44715 4.00906 4.31605 4.43079 4.48655 4.59631 4.63563 4.68724 4.82196 4.87382 5.00978 5.25721 5.30549 5.37317 5.39898 5.44942 5.47019 5.64756 5.70876 5.72084 5.83116 5.89009 5.98504 6.09648 6.21331 6.37567 6.52433 6.56939 6.66505 7.01856 7.21718 7.25802 7.53770 7.91573 7.96592 8.09215 8.94966 9.50607 9.62243 9.97655 11.08424 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.005545 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.529917 B = 5048.688219 C = 7501.614517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 C -0.181 4.181 4 O -0.284 6.284 5 C 0.200 3.800 6 C -0.218 4.218 7 C -0.025 4.025 8 C -0.087 4.087 9 N 0.041 4.959 10 O -0.183 6.183 11 O -0.170 6.170 12 C -0.007 4.007 13 C -0.111 4.111 14 C 0.190 3.810 15 N -0.564 5.564 16 C -0.237 4.237 17 H 0.081 0.919 18 C -0.001 4.001 19 N -0.921 5.921 20 Si 0.921 3.079 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.192 3.808 25 C 0.489 3.511 26 O -0.542 6.542 27 O -0.541 6.541 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.259 0.741 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 13.351 -8.411 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.238 4.238 4 O -0.196 6.196 5 C 0.151 3.849 6 C -0.237 4.237 7 C -0.044 4.044 8 C -0.171 4.171 9 N 0.556 4.444 10 O -0.395 6.395 11 O -0.385 6.385 12 C -0.027 4.027 13 C -0.115 4.115 14 C 0.062 3.938 15 N -0.283 5.283 16 C -0.365 4.365 17 H 0.099 0.901 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.751 3.249 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.064 3.936 25 C 0.330 3.670 26 O -0.430 6.430 27 O -0.351 6.351 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.173 0.827 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.140 0.860 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.092 13.441 -8.289 15.829 hybrid contribution 0.150 -1.321 0.469 1.410 sum 1.243 12.120 -7.820 14.477 Atomic orbital electron populations 1.21899 0.91676 1.04381 1.02885 1.22599 0.96240 0.92381 0.87235 1.22414 1.01948 0.95996 1.03449 1.86297 1.28112 1.66503 1.38708 1.19171 0.84159 0.88852 0.92679 1.21193 0.95133 1.07600 0.99802 1.20617 0.95134 0.92024 0.96644 1.20946 0.85307 1.09865 1.01030 1.43575 1.02689 0.98524 0.99603 1.94477 1.56597 1.65451 1.22981 1.94534 1.76145 1.37305 1.30483 1.20772 0.91610 0.94492 0.95830 1.20561 0.94140 0.97091 0.99737 1.19677 0.90634 0.93365 0.90115 1.43855 1.05323 1.02023 1.77080 1.19407 0.93177 0.81413 1.42536 0.90089 1.24819 0.95042 0.99108 1.00630 1.69502 0.98908 1.32345 1.56268 0.85973 0.77452 0.83577 0.77919 1.21266 1.21535 1.20378 1.20603 0.82244 0.98997 0.91785 1.24950 0.79792 0.69703 0.92543 1.90487 1.76544 1.47370 1.28640 1.84607 1.23121 1.85313 1.42009 0.91230 0.90605 0.90548 0.90625 0.90865 0.91124 0.91947 0.83581 0.83474 0.82720 0.91696 0.91741 0.92957 0.92394 0.86019 0.76876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.56 37.16 0.36 -1.03 16 2 C 0.07 0.69 2.85 -26.73 -0.08 0.62 16 3 C -0.18 -1.38 9.17 37.16 0.34 -1.04 16 4 O -0.28 -3.83 6.72 -19.44 -0.13 -3.96 16 5 C 0.20 2.83 6.57 -39.22 -0.26 2.57 16 6 C -0.22 -2.56 8.25 -39.43 -0.33 -2.89 16 7 C -0.02 -0.31 9.55 -39.61 -0.38 -0.69 16 8 C -0.09 -1.35 6.85 -79.94 -0.55 -1.89 16 9 N 0.04 0.69 4.45 33.97 0.15 0.84 16 10 O -0.18 -3.07 18.44 -29.46 -0.54 -3.62 16 11 O -0.17 -3.05 18.44 -29.46 -0.54 -3.59 16 12 C -0.01 -0.11 9.17 -39.61 -0.36 -0.47 16 13 C -0.11 -1.80 5.43 -104.47 -0.57 -2.37 16 14 C 0.19 3.57 5.44 -5.19 -0.03 3.54 16 15 N -0.56 -12.88 2.06 -175.98 -0.36 -13.24 16 16 C -0.24 -6.07 9.67 -15.06 -0.15 -6.22 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C 0.00 -0.03 5.36 -17.43 -0.09 -0.12 16 19 N -0.92 -24.94 7.94 55.49 0.44 -24.50 16 20 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.19 4.27 5.51 -5.19 -0.03 4.24 16 25 C 0.49 11.62 5.91 36.01 0.21 11.83 16 26 O -0.54 -14.75 17.04 -18.75 -0.32 -15.07 16 27 O -0.54 -11.02 13.42 -39.25 -0.53 -11.55 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.66 6.30 -51.93 -0.33 0.34 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.48 6.93 -51.93 -0.36 0.12 16 35 H 0.15 1.27 5.44 -52.49 -0.29 0.99 16 36 H 0.15 1.57 7.61 -52.49 -0.40 1.17 16 37 H 0.16 2.45 7.57 -52.48 -0.40 2.05 16 38 H 0.06 1.17 7.80 -51.93 -0.41 0.76 16 39 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.06 1.12 5.60 -51.93 -0.29 0.83 16 42 H 0.12 3.00 6.23 -51.93 -0.32 2.68 16 43 H 0.38 6.22 9.10 45.56 0.41 6.63 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -32.20 366.03 -7.69 -39.89 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.44 Total: 6.46 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.90 Total: 6.07 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.23 Total: -36.89 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -2.06 Total: -37.78 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.20 -7.69 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827058695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.820 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds