Wall clock time and date at job start Tue Mar 31 2020 20:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47530 * 2 1 4 4 C 1.50702 * 109.46854 * 239.99814 * 2 1 3 5 5 H 1.08008 * 120.00059 * 239.99792 * 4 2 1 6 6 C 1.37874 * 120.00235 * 60.00284 * 4 2 1 7 7 N 1.31514 * 119.99720 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00071 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47107 * 90.00355 * 8 6 4 10 10 H 1.48499 * 109.47399 * 210.00120 * 8 6 4 11 11 H 1.48495 * 109.47505 * 330.00428 * 8 6 4 12 12 C 1.52998 * 109.46767 * 120.00137 * 2 1 3 13 13 N 1.46505 * 109.47217 * 299.99683 * 12 2 1 14 14 C 1.34773 * 120.00080 * 180.02562 * 13 12 2 15 15 O 1.21742 * 119.99922 * 5.16852 * 14 13 12 16 16 C 1.46321 * 120.00111 * 185.17373 * 14 13 12 17 17 C 1.38670 * 126.78205 * 260.73705 * 16 14 13 18 18 C 1.50693 * 125.91205 * 359.97438 * 17 16 14 19 19 F 1.39901 * 109.47318 * 300.00115 * 18 17 16 20 20 F 1.39901 * 109.47185 * 59.99822 * 18 17 16 21 21 N 1.32361 * 108.17706 * 180.02562 * 17 16 14 22 22 C 1.32871 * 109.74322 * 359.97438 * 21 17 16 23 23 C 1.40873 * 132.71492 * 179.97438 * 22 21 17 24 24 N 1.31188 * 119.75429 * 180.02562 * 23 22 21 25 25 C 1.33207 * 121.28756 * 0.02562 * 24 23 22 26 26 C 1.35407 * 121.07865 * 0.22110 * 25 24 23 27 27 N 1.36060 * 119.78255 * 359.55319 * 26 25 24 28 28 H 1.08996 * 109.46834 * 300.00391 * 1 2 3 29 29 H 1.09004 * 109.46563 * 59.99929 * 1 2 3 30 30 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47449 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46787 * 299.99897 * 3 2 1 33 33 H 1.09001 * 109.47147 * 59.99257 * 3 2 1 34 34 H 0.97006 * 119.99906 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47139 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47751 * 59.99964 * 12 2 1 37 37 H 0.96998 * 119.99789 * 0.02562 * 13 12 2 38 38 H 1.09000 * 109.47520 * 179.97438 * 18 17 16 39 39 H 1.07996 * 120.12222 * 0.05554 * 23 22 21 40 40 H 1.08007 * 119.45675 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.10890 * 179.74740 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4874 -0.1405 -5.1120 11 1 3.6307 -1.7569 -3.7119 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.6531 -1.4224 3.7830 16 6 1.2993 0.1291 4.8621 17 6 1.9012 1.0705 5.6833 18 6 3.2834 1.6440 5.5054 19 9 4.2266 0.6121 5.5569 20 9 3.3648 2.2887 4.2665 21 7 1.0520 1.3774 6.6511 22 6 -0.0709 0.6835 6.4997 23 6 -1.2699 0.6331 7.2375 24 7 -2.2390 -0.1625 6.8514 25 6 -2.1144 -0.9301 5.7699 26 6 -0.9791 -0.9193 5.0321 27 7 0.0520 -0.1070 5.3902 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7097 1.1618 -3.4845 35 1 3.1300 -0.7217 1.2491 36 1 1.6766 -1.7490 1.2493 37 1 0.9937 0.7578 2.3564 38 1 3.4846 2.3608 6.3015 39 1 -1.3911 1.2474 8.1174 40 1 -2.9312 -1.5739 5.4786 41 1 -0.8934 -1.5512 4.1604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891520708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:06 Heat of formation + Delta-G solvation = -32.005714 kcal Electronic energy + Delta-G solvation = -29889.855496 eV Core-core repulsion = 25442.355890 eV Total energy + Delta-G solvation = -4447.499606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.07348 -47.07494 -43.59383 -39.56081 -38.77492 -36.50133 -34.95352 -33.48754 -31.79261 -31.07190 -30.12108 -27.58581 -26.20984 -25.82510 -25.36860 -24.27189 -23.93792 -22.04043 -20.79586 -19.18097 -18.80132 -18.37098 -17.72402 -17.43173 -16.73566 -16.69882 -16.47705 -15.93702 -15.75320 -15.37521 -15.21281 -14.74903 -14.54151 -13.96292 -13.81769 -13.41942 -13.36053 -13.28262 -13.00516 -12.96067 -12.85642 -12.31840 -12.15323 -11.69199 -11.49900 -11.29355 -10.99762 -10.93972 -10.76737 -10.50040 -10.48346 -10.30589 -10.07288 -9.74509 -9.60351 -9.44275 -8.89062 -8.70172 -8.60021 -8.43860 -6.09155 -4.19842 -0.03259 0.50984 1.55626 1.93048 2.60328 2.97098 3.02616 3.23838 3.30129 3.31831 3.37458 3.73430 3.75091 3.81370 3.98629 4.33795 4.42918 4.56150 4.64537 4.82238 4.86686 5.02029 5.17926 5.29444 5.58850 5.65658 6.03835 6.14825 6.16162 6.37527 6.54389 6.70939 6.75704 6.83422 6.91061 6.94966 7.19159 7.24431 7.45810 7.60298 7.70553 7.91236 8.03200 8.21879 8.32676 8.80354 9.46535 10.92319 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014165 B = 0.003513 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.240556 B = 7969.326380 C = 9103.796715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.129 3.871 13 N -0.694 5.694 14 C 0.576 3.424 15 O -0.514 6.514 16 C -0.043 4.043 17 C 0.030 3.970 18 C 0.353 3.647 19 F -0.182 7.182 20 F -0.184 7.184 21 N -0.437 5.437 22 C 0.169 3.831 23 C 0.199 3.801 24 N -0.454 5.454 25 C 0.051 3.949 26 C 0.016 3.984 27 N -0.318 5.318 28 H 0.003 0.997 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.029 0.971 32 H 0.087 0.913 33 H 0.006 0.994 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.402 0.598 38 H 0.138 0.862 39 H 0.195 0.805 40 H 0.188 0.812 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 2.034 17.796 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.008 3.992 13 N -0.344 5.344 14 C 0.357 3.643 15 O -0.389 6.389 16 C -0.165 4.165 17 C -0.110 4.110 18 C 0.298 3.702 19 F -0.163 7.163 20 F -0.166 7.166 21 N -0.157 5.157 22 C -0.075 4.075 23 C 0.017 3.983 24 N -0.166 5.166 25 C -0.088 4.088 26 C -0.109 4.109 27 N 0.009 4.991 28 H 0.022 0.978 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.237 0.763 38 H 0.155 0.845 39 H 0.212 0.788 40 H 0.204 0.796 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.231 1.762 18.555 19.358 hybrid contribution 0.647 -0.712 -2.134 2.341 sum -4.584 1.049 16.421 17.081 Atomic orbital electron populations 1.21846 0.97809 0.99085 1.00101 1.18375 0.92740 0.92975 0.90314 1.21831 0.98865 0.98064 1.00147 1.20943 1.31740 1.12218 0.89729 0.92330 1.24872 0.94783 0.94866 0.98888 1.69799 1.36564 1.22597 1.23353 0.86552 0.79357 0.79368 0.82502 1.20713 1.21205 1.19833 1.21927 0.98976 0.95594 0.82719 1.46366 1.51415 1.31345 1.05316 1.16635 0.82437 0.83457 0.81774 1.90895 1.34211 1.27831 1.85983 1.21369 0.85749 1.06923 1.02486 1.21753 0.97505 0.98015 0.93750 1.19402 0.81092 0.84372 0.85378 1.93099 1.65417 1.61207 1.96611 1.93093 1.96372 1.81308 1.45785 1.70007 0.99217 1.23436 1.23052 1.22044 0.98415 0.95745 0.91256 1.22929 0.83276 0.94628 0.97493 1.68156 1.28851 1.05291 1.14270 1.22376 0.96219 0.98946 0.91247 1.22868 0.87355 0.97069 1.03581 1.42477 1.10627 1.26261 1.19703 0.97846 0.89374 0.95398 0.95152 0.89482 0.97539 0.92915 0.91836 0.92262 0.76263 0.84468 0.78783 0.79557 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 4 C -0.51 -12.89 8.01 -34.44 -0.28 -13.17 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.04 9.35 55.43 0.52 -22.52 16 8 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.13 2.64 4.51 -4.04 -0.02 2.62 16 13 N -0.69 -12.25 4.95 -61.72 -0.31 -12.56 16 14 C 0.58 10.25 7.36 -13.01 -0.10 10.15 16 15 O -0.51 -10.81 17.12 5.15 0.09 -10.73 16 16 C -0.04 -0.66 6.77 -81.92 -0.55 -1.22 16 17 C 0.03 0.43 6.60 -82.21 -0.54 -0.12 16 18 C 0.35 4.54 5.55 36.00 0.20 4.74 16 19 F -0.18 -2.77 17.32 2.25 0.04 -2.73 16 20 F -0.18 -2.70 17.32 2.25 0.04 -2.66 16 21 N -0.44 -5.66 11.24 -8.44 -0.09 -5.75 16 22 C 0.17 2.01 7.81 -156.07 -1.22 0.79 16 23 C 0.20 1.76 11.33 -16.83 -0.19 1.57 16 24 N -0.45 -4.18 10.42 -13.10 -0.14 -4.31 16 25 C 0.05 0.42 11.08 -17.96 -0.20 0.22 16 26 C 0.02 0.17 10.95 -16.69 -0.18 -0.02 16 27 N -0.32 -4.12 2.96 -58.85 -0.17 -4.29 16 28 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 29 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 34 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.40 6.70 6.15 -40.82 -0.25 6.45 16 38 H 0.14 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.19 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -30.60 356.27 -6.85 -37.45 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.52 Total: 4.20 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.65 Total: 3.26 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.19 Total: -49.43 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.08 Total: -5.40 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.60 -6.85 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891520708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.441 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds