Wall clock time and date at job start Tue Mar 31 2020 20:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47530 * 2 1 4 4 C 1.50702 * 109.46854 * 239.99814 * 2 1 3 5 5 H 1.08008 * 120.00059 * 239.99792 * 4 2 1 6 6 C 1.37874 * 120.00235 * 60.00284 * 4 2 1 7 7 N 1.31514 * 119.99720 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00071 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47107 * 90.00355 * 8 6 4 10 10 H 1.48499 * 109.47399 * 210.00120 * 8 6 4 11 11 H 1.48495 * 109.47505 * 330.00428 * 8 6 4 12 12 C 1.52998 * 109.46767 * 120.00137 * 2 1 3 13 13 N 1.46505 * 109.47217 * 299.99683 * 12 2 1 14 14 C 1.34773 * 120.00080 * 180.02562 * 13 12 2 15 15 O 1.21742 * 119.99922 * 5.16852 * 14 13 12 16 16 C 1.46321 * 120.00111 * 185.17373 * 14 13 12 17 17 C 1.38670 * 126.78205 * 260.73705 * 16 14 13 18 18 C 1.50693 * 125.91205 * 359.97438 * 17 16 14 19 19 F 1.39901 * 109.47318 * 300.00115 * 18 17 16 20 20 F 1.39901 * 109.47185 * 59.99822 * 18 17 16 21 21 N 1.32361 * 108.17706 * 180.02562 * 17 16 14 22 22 C 1.32871 * 109.74322 * 359.97438 * 21 17 16 23 23 C 1.40873 * 132.71492 * 179.97438 * 22 21 17 24 24 N 1.31188 * 119.75429 * 180.02562 * 23 22 21 25 25 C 1.33207 * 121.28756 * 0.02562 * 24 23 22 26 26 C 1.35407 * 121.07865 * 0.22110 * 25 24 23 27 27 N 1.36060 * 119.78255 * 359.55319 * 26 25 24 28 28 H 1.08996 * 109.46834 * 300.00391 * 1 2 3 29 29 H 1.09004 * 109.46563 * 59.99929 * 1 2 3 30 30 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47449 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46787 * 299.99897 * 3 2 1 33 33 H 1.09001 * 109.47147 * 59.99257 * 3 2 1 34 34 H 0.97006 * 119.99906 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47139 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47751 * 59.99964 * 12 2 1 37 37 H 0.96998 * 119.99789 * 0.02562 * 13 12 2 38 38 H 1.09000 * 109.47520 * 179.97438 * 18 17 16 39 39 H 1.07996 * 120.12222 * 0.05554 * 23 22 21 40 40 H 1.08007 * 119.45675 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.10890 * 179.74740 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4874 -0.1405 -5.1120 11 1 3.6307 -1.7569 -3.7119 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.6531 -1.4224 3.7830 16 6 1.2993 0.1291 4.8621 17 6 1.9012 1.0705 5.6833 18 6 3.2834 1.6440 5.5054 19 9 4.2266 0.6121 5.5569 20 9 3.3648 2.2887 4.2665 21 7 1.0520 1.3774 6.6511 22 6 -0.0709 0.6835 6.4997 23 6 -1.2699 0.6331 7.2375 24 7 -2.2390 -0.1625 6.8514 25 6 -2.1144 -0.9301 5.7699 26 6 -0.9791 -0.9193 5.0321 27 7 0.0520 -0.1070 5.3902 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7097 1.1618 -3.4845 35 1 3.1300 -0.7217 1.2491 36 1 1.6766 -1.7490 1.2493 37 1 0.9937 0.7578 2.3564 38 1 3.4846 2.3608 6.3015 39 1 -1.3911 1.2474 8.1174 40 1 -2.9312 -1.5739 5.4786 41 1 -0.8934 -1.5512 4.1604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891520708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:05 Heat of formation + Delta-G solvation = -50.630497 kcal Electronic energy + Delta-G solvation = -29890.663127 eV Core-core repulsion = 25442.355890 eV Total energy + Delta-G solvation = -4448.307237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.14479 -48.16699 -44.51181 -40.91981 -39.71130 -38.22089 -35.83516 -35.16220 -33.02888 -32.49742 -31.12283 -28.56078 -27.68361 -27.62840 -27.14746 -25.48591 -24.80216 -23.16268 -21.95445 -20.75927 -20.11602 -19.23941 -18.84922 -18.49414 -17.92216 -17.67487 -17.64782 -17.45304 -16.87016 -16.70891 -16.55551 -16.05831 -15.88548 -15.22600 -15.06399 -14.84221 -14.55424 -14.52642 -14.16275 -14.07892 -14.05477 -14.02744 -13.26423 -13.15444 -13.03361 -12.73643 -12.66899 -12.63034 -12.31642 -12.18650 -12.04856 -11.55713 -11.54753 -11.26393 -11.20455 -10.76046 -10.52047 -10.43984 -10.20879 -9.50302 -8.04632 -6.20667 -0.79923 -0.42019 0.53910 0.97290 1.31875 1.42111 1.45747 1.53512 2.00357 2.04484 2.27017 2.45549 2.82840 2.95589 3.08197 3.12544 3.19678 3.38827 3.54557 3.82743 3.88588 3.91978 4.29971 4.33109 4.41008 4.48706 4.62494 4.66241 4.87156 4.95479 4.97952 5.02031 5.12488 5.14968 5.29604 5.44118 5.61183 5.64878 6.00691 6.08259 6.14258 6.26309 6.38589 6.43034 6.79831 6.86889 7.47492 8.94510 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014165 B = 0.003513 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.240556 B = 7969.326380 C = 9103.796715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.145 3.855 13 N -0.687 5.687 14 C 0.588 3.412 15 O -0.554 6.554 16 C -0.083 4.083 17 C 0.029 3.971 18 C 0.345 3.655 19 F -0.200 7.200 20 F -0.198 7.198 21 N -0.441 5.441 22 C 0.166 3.834 23 C 0.209 3.791 24 N -0.458 5.458 25 C 0.073 3.927 26 C -0.012 4.012 27 N -0.318 5.318 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.408 0.592 38 H 0.184 0.816 39 H 0.232 0.768 40 H 0.223 0.777 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.795 2.365 19.543 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.337 5.337 14 C 0.370 3.630 15 O -0.431 6.431 16 C -0.204 4.204 17 C -0.113 4.113 18 C 0.291 3.709 19 F -0.181 7.181 20 F -0.179 7.179 21 N -0.161 5.161 22 C -0.077 4.077 23 C 0.028 3.972 24 N -0.169 5.169 25 C -0.065 4.065 26 C -0.136 4.136 27 N 0.011 4.989 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.245 0.755 38 H 0.201 0.799 39 H 0.249 0.751 40 H 0.240 0.760 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.052 2.106 20.312 21.604 hybrid contribution 1.061 -0.832 -2.575 2.906 sum -5.991 1.274 17.737 18.765 Atomic orbital electron populations 1.21659 0.96845 0.98998 1.00158 1.18366 0.93449 0.92821 0.90190 1.21676 0.98038 0.98052 1.00094 1.21223 1.31878 1.12283 0.91263 0.93385 1.25436 0.95070 0.95511 1.00970 1.69907 1.36975 1.23189 1.23667 0.85751 0.78707 0.78468 0.79836 1.20318 1.21018 1.20083 1.21511 0.97716 0.95359 0.83152 1.46158 1.51412 1.31347 1.04808 1.16806 0.81437 0.82501 0.82233 1.90862 1.35953 1.29605 1.86673 1.20855 0.87621 1.09218 1.02739 1.21948 0.97973 0.97682 0.93662 1.19985 0.80385 0.84671 0.85907 1.93058 1.66065 1.62283 1.96667 1.93057 1.96391 1.81447 1.46989 1.70006 0.99462 1.23938 1.22696 1.22664 0.99009 0.95080 0.90986 1.23636 0.81635 0.94212 0.97669 1.68300 1.28701 1.05419 1.14470 1.23005 0.96012 0.97726 0.89780 1.23256 0.87536 0.97904 1.04933 1.42545 1.10232 1.26476 1.19679 0.95138 0.91816 0.95502 0.96251 0.91696 0.95265 0.92999 0.93706 0.92740 0.75512 0.79948 0.75140 0.76035 0.79868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.08 71.98 0.58 -4.47 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 4 C -0.53 -27.21 8.01 25.60 0.21 -27.01 16 5 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -47.12 9.35 21.45 0.20 -46.91 16 8 Si 0.95 41.84 29.54 68.60 2.03 43.86 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 C 0.15 6.03 4.51 86.38 0.39 6.42 16 13 N -0.69 -24.30 4.95 -467.40 -2.31 -26.62 16 14 C 0.59 21.13 7.36 86.35 0.64 21.77 16 15 O -0.55 -23.93 17.12 -4.48 -0.08 -24.01 16 16 C -0.08 -2.50 6.77 40.46 0.27 -2.22 16 17 C 0.03 0.79 6.60 42.58 0.28 1.07 16 18 C 0.34 8.63 5.55 71.23 0.40 9.03 16 19 F -0.20 -6.11 17.32 44.97 0.78 -5.33 16 20 F -0.20 -5.74 17.32 44.97 0.78 -4.96 16 21 N -0.44 -10.60 11.24 -180.62 -2.03 -12.63 16 22 C 0.17 3.58 7.81 134.09 1.05 4.63 16 23 C 0.21 2.97 11.33 85.43 0.97 3.93 16 24 N -0.46 -6.70 10.42 -195.36 -2.04 -8.73 16 25 C 0.07 0.97 11.08 83.83 0.93 1.90 16 26 C -0.01 -0.22 10.95 83.38 0.91 0.70 16 27 N -0.32 -7.77 2.96 -340.11 -1.01 -8.77 16 28 H 0.03 1.09 6.86 -2.39 -0.02 1.07 16 29 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 3.23 6.07 -2.38 -0.01 3.21 16 33 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 34 H 0.26 13.19 8.31 -92.70 -0.77 12.41 16 35 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.41 13.34 6.15 -92.71 -0.57 12.77 16 38 H 0.18 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.23 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -67.16 356.27 4.46 -62.70 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.53 Total: 16.17 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.61 Total: 15.23 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -7.19 Total: -103.67 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.08 Total: -24.01 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 1.56 Total: -10.29 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -67.16 4.46 -62.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891520708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.069 kcal (2) G-P(sol) polarization free energy of solvation -67.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds