Wall clock time and date at job start Tue Mar 31 2020 20:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31929 * 119.01740 * 2 1 4 4 C 1.32132 * 121.05839 * 179.71374 * 3 2 1 5 5 C 1.38986 * 119.12284 * 0.54775 * 4 3 2 6 6 Cl 1.73602 * 120.88898 * 179.75188 * 5 4 3 7 7 C 1.39636 * 118.22745 * 359.72937 * 5 4 3 8 8 C 1.48366 * 120.56561 * 179.97438 * 7 5 4 9 9 O 1.21487 * 119.99946 * 0.02562 * 8 7 5 10 10 N 1.34772 * 120.00336 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00219 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46022 * 325.02442 * 11 10 8 13 13 C 1.53039 * 109.46280 * 85.00046 * 11 10 8 14 14 C 1.53192 * 109.31276 * 181.38591 * 13 11 10 15 15 N 1.46921 * 108.77769 * 305.36074 * 14 13 11 16 16 C 1.36932 * 120.63608 * 233.63292 * 15 14 13 17 17 H 1.07995 * 120.00199 * 151.81860 * 16 15 14 18 18 C 1.38813 * 119.99645 * 331.82281 * 16 15 14 19 19 N 1.31621 * 120.00068 * 343.07644 * 18 16 15 20 20 Si 1.86798 * 120.00232 * 163.07930 * 18 16 15 21 21 H 1.48499 * 109.47210 * 59.99458 * 20 18 16 22 22 H 1.48497 * 109.47653 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46865 * 300.00028 * 20 18 16 24 24 C 1.46932 * 118.73548 * 53.60945 * 15 14 13 25 25 C 1.53043 * 109.45987 * 205.06701 * 11 10 8 26 26 H 1.08998 * 109.50082 * 298.56461 * 25 11 10 27 27 C 1.53003 * 109.49737 * 58.66267 * 25 11 10 28 28 N 1.31515 * 119.02138 * 180.26936 * 2 1 3 29 29 H 1.08995 * 109.47085 * 269.73222 * 1 2 3 30 30 H 1.09003 * 109.47083 * 149.73003 * 1 2 3 31 31 H 1.08998 * 109.47056 * 29.73068 * 1 2 3 32 32 H 1.07998 * 120.44195 * 180.27573 * 4 3 2 33 33 H 0.97005 * 120.00194 * 0.02562 * 10 8 7 34 34 H 1.09003 * 109.49439 * 301.33490 * 13 11 10 35 35 H 1.09000 * 109.49746 * 61.39986 * 13 11 10 36 36 H 1.09002 * 109.58513 * 65.15146 * 14 13 11 37 37 H 1.09001 * 109.58156 * 185.57292 * 14 13 11 38 38 H 0.96997 * 120.00269 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.58319 * 66.18350 * 24 15 14 40 40 H 1.08998 * 109.58440 * 186.45982 * 24 15 14 41 41 H 1.08995 * 109.47348 * 60.00136 * 27 25 11 42 42 H 1.09003 * 109.46873 * 180.02562 * 27 25 11 43 43 H 1.08997 * 109.46811 * 299.99662 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4674 1.2007 0.0057 5 6 4.1867 0.0115 0.0001 6 17 5.9227 0.0199 0.0007 7 6 3.4758 -1.1903 -0.0055 8 6 4.1911 -2.4901 -0.0122 9 8 5.4058 -2.5150 -0.0124 10 7 3.4936 -3.6432 -0.0181 11 6 4.2000 -4.9267 -0.0242 12 1 5.1130 -4.8358 -0.6125 13 6 4.5555 -5.3198 1.4115 14 6 5.3242 -6.6448 1.3984 15 7 4.5269 -7.6470 0.6783 16 6 4.2285 -8.8503 1.2597 17 1 3.3275 -9.3762 0.9806 18 6 5.0840 -9.3940 2.2080 19 7 6.3184 -8.9492 2.3128 20 14 4.4837 -10.7571 3.3354 21 1 4.0633 -11.9247 2.5200 22 1 5.5809 -11.1621 4.2504 23 1 3.3295 -10.2683 4.1318 24 6 4.0555 -7.3333 -0.6775 25 6 3.3010 -6.0006 -0.6411 26 1 2.3988 -6.1096 -0.0393 27 6 2.9194 -5.5908 -2.0650 28 7 2.1450 -1.1500 -0.0054 29 1 -0.3633 -0.0048 1.0276 30 1 -0.3633 -0.8876 -0.5180 31 1 -0.3633 0.8924 -0.5096 32 1 3.9811 2.1507 0.0101 33 1 2.5238 -3.6235 -0.0184 34 1 5.1766 -4.5433 1.8581 35 1 3.6415 -5.4346 1.9942 36 1 6.2806 -6.5074 0.8939 37 1 5.4934 -6.9791 2.4220 38 1 6.9163 -9.3294 2.9752 39 1 4.9084 -7.2522 -1.3513 40 1 3.3895 -8.1233 -1.0246 41 1 3.8220 -5.4835 -2.6665 42 1 2.2787 -6.3558 -2.5038 43 1 2.3851 -4.6412 -2.0389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943335594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:27 Heat of formation + Delta-G solvation = 31.458819 kcal Electronic energy + Delta-G solvation = -27202.314362 eV Core-core repulsion = 23309.363466 eV Total energy + Delta-G solvation = -3892.950897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68657 -39.69862 -37.71489 -36.92207 -34.70117 -34.31328 -33.38751 -32.59054 -31.19038 -29.86454 -28.78309 -26.47476 -25.82611 -24.83444 -23.48125 -22.18011 -21.01170 -20.62867 -19.54266 -18.55994 -17.88363 -16.71684 -16.40675 -16.07990 -15.82756 -15.44040 -14.81527 -14.62598 -14.14122 -13.89903 -13.85642 -13.59525 -13.34882 -13.22551 -12.83835 -12.80184 -12.66487 -12.14170 -12.11101 -11.78930 -11.64439 -11.50518 -11.32180 -11.29252 -11.04867 -10.81088 -10.66026 -10.42299 -10.33252 -10.24760 -10.00310 -9.79540 -9.65266 -9.52584 -9.35575 -8.73833 -8.42823 -6.68590 -5.78634 -3.21862 -0.00257 0.31371 1.66721 2.58173 2.87014 3.36427 3.37886 3.38952 3.44752 3.45544 3.51309 4.09470 4.26572 4.49140 4.56870 4.94317 5.11222 5.13266 5.27592 5.30671 5.36748 5.40315 5.50570 5.59141 5.77880 5.87868 5.97358 6.09414 6.19442 6.23990 6.26675 6.32314 6.44256 6.58185 6.66272 6.76609 6.86894 6.95512 7.35923 7.39213 7.60889 7.67843 7.79342 8.17622 8.44855 9.20720 9.83937 10.40554 11.29927 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002863 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.083765 B = 9777.902988 C =10381.124378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.317 3.683 3 N -0.495 5.495 4 C 0.166 3.834 5 C -0.111 4.111 6 Cl 0.003 6.997 7 C 0.152 3.848 8 C 0.557 3.443 9 O -0.502 6.502 10 N -0.694 5.694 11 C 0.156 3.844 12 H 0.085 0.915 13 C -0.148 4.148 14 C 0.175 3.825 15 N -0.592 5.592 16 C -0.256 4.256 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.155 3.845 25 C -0.114 4.114 26 H 0.072 0.928 27 C -0.143 4.143 28 N -0.481 5.481 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.405 0.595 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.090 0.910 38 H 0.255 0.745 39 H 0.021 0.979 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 20.791 -6.302 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.210 5.210 4 C -0.002 4.002 5 C -0.144 4.144 6 Cl 0.033 6.967 7 C 0.003 3.997 8 C 0.339 3.661 9 O -0.376 6.376 10 N -0.344 5.344 11 C 0.053 3.947 12 H 0.104 0.896 13 C -0.188 4.188 14 C 0.048 3.952 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.028 3.972 25 C -0.135 4.135 26 H 0.091 0.909 27 C -0.201 4.201 28 N -0.199 5.199 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.201 0.799 33 H 0.241 0.759 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.415 20.600 -6.194 23.481 hybrid contribution 0.367 -0.514 0.689 0.935 sum -9.047 20.085 -5.504 22.706 Atomic orbital electron populations 1.20644 0.84586 1.04744 1.04477 1.23397 0.98657 0.82823 0.90143 1.68315 1.08993 1.30334 1.13334 1.23422 0.89207 0.97445 0.90168 1.22915 0.90201 0.95968 1.05335 1.98455 1.03833 1.98598 1.95863 1.21863 0.89494 0.94620 0.93723 1.17632 0.86860 0.82674 0.78944 1.90903 1.11959 1.86281 1.48425 1.46170 1.10884 1.05457 1.71927 1.21198 0.95417 0.79809 0.98280 0.89646 1.22598 1.01211 1.00477 0.94514 1.20755 0.90894 0.84118 0.99408 1.44090 1.61887 1.14608 1.10849 1.19126 1.02768 0.96989 1.19648 0.91678 1.25058 0.94613 0.98257 1.01589 1.70020 1.04017 1.44563 1.35910 0.86372 0.77722 0.81859 0.80810 1.20882 1.21641 1.21036 1.20890 0.95648 0.92409 0.88238 1.21977 0.99194 0.96920 0.95416 0.90909 1.21780 1.01105 1.00445 0.96732 1.68342 1.07549 1.30935 1.13056 0.89034 0.89019 0.89175 0.79856 0.75943 0.92715 0.92527 0.96057 0.89215 0.93513 0.96154 0.92303 0.92894 0.92639 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.31 36.01 0.37 -0.16 16 2 C 0.32 3.12 7.64 -157.32 -1.20 1.92 16 3 N -0.49 -4.87 10.31 -10.70 -0.11 -4.98 16 4 C 0.17 1.52 11.14 -17.15 -0.19 1.33 16 5 C -0.11 -1.29 6.40 -38.78 -0.25 -1.54 16 6 Cl 0.00 0.04 26.25 -51.86 -1.36 -1.32 16 7 C 0.15 1.98 6.79 -82.61 -0.56 1.42 16 8 C 0.56 8.54 7.79 -12.09 -0.09 8.45 16 9 O -0.50 -8.99 13.81 5.38 0.07 -8.91 16 10 N -0.69 -10.15 4.36 -54.55 -0.24 -10.38 16 11 C 0.16 2.67 1.88 -67.89 -0.13 2.54 16 12 H 0.09 1.63 7.57 -51.93 -0.39 1.23 16 13 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 14 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 15 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 16 C -0.26 -6.92 9.58 -15.06 -0.14 -7.07 16 17 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 19 N -0.90 -26.17 11.20 55.49 0.62 -25.55 16 20 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.16 3.15 5.80 -3.71 -0.02 3.13 16 25 C -0.11 -1.87 2.46 -90.50 -0.22 -2.09 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 C -0.14 -1.90 9.03 37.16 0.34 -1.57 16 28 N -0.48 -5.58 9.59 -7.31 -0.07 -5.65 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.41 5.22 7.70 -40.82 -0.31 4.91 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -31.13 366.40 -9.48 -40.62 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.02 Total: 1.74 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.36 Total: 7.50 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.31 Total: -61.68 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.36 Total: -1.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.13 -9.48 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943335594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.076 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds