Wall clock time and date at job start Tue Mar 31 2020 20:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31936 * 119.02088 * 2 1 4 4 C 1.32133 * 121.06025 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12292 * 359.73869 * 4 3 2 6 6 Cl 1.73597 * 120.88618 * 180.25692 * 5 4 3 7 7 C 1.39631 * 118.22684 * 0.51667 * 5 4 3 8 8 C 1.48375 * 120.56015 * 179.75957 * 7 5 4 9 9 O 1.21481 * 120.00308 * 359.72384 * 8 7 5 10 10 N 1.34781 * 119.99591 * 179.72173 * 8 7 5 11 11 C 1.46497 * 119.99901 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.45658 * 325.02942 * 11 10 8 13 13 C 1.53043 * 109.45965 * 84.99888 * 11 10 8 14 14 C 1.53193 * 109.30963 * 58.65915 * 13 11 10 15 15 N 1.46924 * 108.77570 * 54.63298 * 14 13 11 16 16 C 1.36942 * 120.62759 * 126.37031 * 15 14 13 17 17 H 1.08000 * 119.99690 * 209.85042 * 16 15 14 18 18 C 1.38802 * 119.99965 * 29.84810 * 16 15 14 19 19 N 1.31622 * 120.00558 * 15.49936 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 195.49351 * 18 16 15 21 21 H 1.48504 * 109.47460 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47507 * 300.00635 * 20 18 16 23 23 H 1.48508 * 109.47038 * 60.00353 * 20 18 16 24 24 C 1.46923 * 118.74187 * 306.64404 * 15 14 13 25 25 H 1.09004 * 109.58631 * 293.57127 * 24 15 14 26 26 C 1.52996 * 109.58910 * 173.14615 * 24 15 14 27 27 C 1.52760 * 109.00965 * 53.30656 * 24 15 14 28 28 N 1.31526 * 119.02173 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47259 * 269.98077 * 1 2 3 30 30 H 1.09000 * 109.47413 * 29.98504 * 1 2 3 31 31 H 1.09005 * 109.46608 * 149.98135 * 1 2 3 32 32 H 1.08001 * 120.43289 * 180.02562 * 4 3 2 33 33 H 0.97000 * 120.00157 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.49796 * 298.70481 * 13 11 10 35 35 H 1.08994 * 109.49791 * 178.60947 * 13 11 10 36 36 H 1.08998 * 109.58588 * 294.84653 * 14 13 11 37 37 H 1.08998 * 109.58589 * 174.42141 * 14 13 11 38 38 H 0.96997 * 120.00640 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.47177 * 59.99973 * 26 24 15 40 40 H 1.08998 * 109.46969 * 180.02562 * 26 24 15 41 41 H 1.08997 * 109.47304 * 299.99802 * 26 24 15 42 42 H 1.08997 * 109.56594 * 185.55354 * 27 24 15 43 43 H 1.09005 * 109.35800 * 65.49870 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0114 0.0045 6 17 5.9227 0.0198 0.0107 7 6 3.4758 -1.1903 -0.0012 8 6 4.1913 -2.4902 -0.0016 9 8 5.4058 -2.5150 -0.0021 10 7 3.4936 -3.6434 -0.0015 11 6 4.2000 -4.9268 -0.0014 12 1 5.1129 -4.8388 -0.5905 13 6 4.5560 -5.3126 1.4362 14 6 3.2735 -5.4018 2.2692 15 7 2.3438 -6.3279 1.6084 16 6 1.8044 -7.3830 2.2948 17 1 1.5428 -8.2906 1.7712 18 6 1.5941 -7.2859 3.6633 19 7 1.6182 -6.1085 4.2511 20 14 1.2766 -8.8264 4.6710 21 1 1.0842 -8.4550 6.0960 22 1 0.0551 -9.5044 4.1675 23 1 2.4375 -9.7447 4.5508 24 6 2.0084 -6.1040 0.1956 25 1 1.4457 -5.1757 0.0962 26 6 1.1701 -7.2735 -0.3242 27 6 3.3008 -6.0038 -0.6127 28 7 2.1451 -1.1501 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 3.9811 2.1508 -0.0001 33 1 2.5238 -3.6235 -0.0015 34 1 5.2153 -4.5569 1.8630 35 1 5.0597 -6.2792 1.4393 36 1 2.8160 -4.4151 2.3424 37 1 3.5106 -5.7718 3.2667 38 1 1.4709 -6.0406 5.2074 39 1 0.2520 -7.3496 0.2584 40 1 0.9228 -7.1057 -1.3724 41 1 1.7385 -8.1986 -0.2290 42 1 3.0668 -5.7400 -1.6441 43 1 3.8164 -6.9639 -0.5903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947780303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:47 Heat of formation + Delta-G solvation = 17.691591 kcal Electronic energy + Delta-G solvation = -27785.427042 eV Core-core repulsion = 23891.879154 eV Total energy + Delta-G solvation = -3893.547888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53132 -41.00021 -39.23272 -37.82747 -35.97594 -35.26133 -34.14175 -34.06666 -32.78185 -31.36085 -29.44263 -28.07284 -27.14579 -26.61481 -24.45889 -23.73630 -22.52857 -22.12320 -20.30578 -19.65806 -18.90949 -18.18145 -17.34045 -17.13513 -16.94845 -16.63178 -16.31741 -16.01312 -15.63603 -15.49963 -15.16595 -14.74597 -14.58795 -14.46498 -14.14227 -13.92956 -13.36652 -13.29221 -13.20811 -12.88890 -12.81857 -12.66280 -12.58032 -12.55155 -12.48648 -12.29651 -12.17985 -12.15316 -11.97818 -11.70188 -11.43707 -11.41076 -10.99351 -10.49266 -10.38458 -10.37484 -10.05039 -8.57617 -7.81118 -5.26735 -0.90381 -0.43864 0.78697 1.48002 1.50415 1.54196 1.55934 1.83283 2.46074 2.54152 2.59373 2.79356 3.20645 3.34577 3.39110 3.63383 3.79080 3.93478 4.07365 4.18957 4.25697 4.43153 4.61659 4.66976 4.68960 4.72705 4.77798 4.78939 4.92869 4.96371 5.02825 5.10405 5.16550 5.21884 5.39524 5.41795 5.51159 5.54336 5.57871 5.74862 5.76529 6.36058 6.45876 6.67244 6.98591 7.20848 7.93279 8.45173 9.25242 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.003476 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.301141 B = 8052.703632 C = 8554.440176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.312 3.688 3 N -0.495 5.495 4 C 0.180 3.820 5 C -0.118 4.118 6 Cl -0.003 7.003 7 C 0.131 3.869 8 C 0.558 3.442 9 O -0.532 6.532 10 N -0.685 5.685 11 C 0.158 3.842 12 H 0.088 0.912 13 C -0.142 4.142 14 C 0.190 3.810 15 N -0.599 5.599 16 C -0.248 4.248 17 H 0.077 0.923 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.958 3.042 21 H -0.301 1.301 22 H -0.274 1.274 23 H -0.281 1.281 24 C 0.160 3.840 25 H 0.018 0.982 26 C -0.129 4.129 27 C -0.126 4.126 28 N -0.496 5.496 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.223 0.777 33 H 0.411 0.589 34 H 0.048 0.952 35 H 0.068 0.932 36 H -0.007 1.007 37 H 0.045 0.955 38 H 0.245 0.755 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 13.444 -13.025 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.209 5.209 4 C 0.011 3.989 5 C -0.151 4.151 6 Cl 0.026 6.974 7 C -0.017 4.017 8 C 0.341 3.659 9 O -0.408 6.408 10 N -0.336 5.336 11 C 0.054 3.946 12 H 0.106 0.894 13 C -0.182 4.182 14 C 0.064 3.936 15 N -0.323 5.323 16 C -0.378 4.378 17 H 0.094 0.906 18 C -0.247 4.247 19 N -0.584 5.584 20 Si 0.787 3.213 21 H -0.228 1.228 22 H -0.200 1.200 23 H -0.207 1.207 24 C 0.054 3.946 25 H 0.036 0.964 26 C -0.187 4.187 27 C -0.165 4.165 28 N -0.214 5.214 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.239 0.761 33 H 0.249 0.751 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.011 0.989 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.639 13.346 -12.878 18.618 hybrid contribution 0.532 -0.664 1.341 1.588 sum 2.171 12.682 -11.537 17.281 Atomic orbital electron populations 1.20802 0.82382 1.05902 1.05318 1.24060 1.00052 0.82382 0.88872 1.68452 1.09291 1.29879 1.13315 1.24032 0.88899 0.97975 0.88039 1.23003 0.89839 0.96158 1.06064 1.98432 1.04383 1.98608 1.95988 1.21618 0.90212 0.94213 0.95654 1.17911 0.86667 0.83443 0.77888 1.90826 1.12776 1.86946 1.50225 1.46005 1.11353 1.04955 1.71298 1.20941 0.95776 0.81722 0.96154 0.89361 1.22384 0.98707 1.00575 0.96508 1.20349 0.87429 0.90953 0.94919 1.44312 1.49966 1.30750 1.07314 1.19470 1.34635 0.93012 0.90687 0.90578 1.25768 1.01088 0.98334 0.99467 1.70179 1.55407 1.23377 1.09450 0.85476 0.78305 0.80099 0.77381 1.22767 1.19983 1.20684 1.20554 0.93543 0.96382 0.84135 0.96407 1.21730 0.99209 0.97711 1.00030 1.22180 0.96812 0.98172 0.99310 1.68380 1.07272 1.32122 1.13642 0.88355 0.87112 0.88568 0.76076 0.75127 0.93375 0.91306 0.98925 0.93692 0.94616 0.94109 0.90554 0.92977 0.89216 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.31 71.23 0.73 -0.65 16 2 C 0.31 7.26 7.64 138.79 1.06 8.32 16 3 N -0.49 -10.52 10.31 -187.76 -1.94 -12.46 16 4 C 0.18 3.43 11.14 84.83 0.94 4.37 16 5 C -0.12 -2.92 6.40 22.79 0.15 -2.78 16 6 Cl 0.00 -0.08 26.25 -2.72 -0.07 -0.15 16 7 C 0.13 3.88 6.79 41.98 0.29 4.17 16 8 C 0.56 18.63 7.79 86.94 0.68 19.31 16 9 O -0.53 -19.25 13.81 -3.66 -0.05 -19.30 16 10 N -0.68 -22.60 4.26 -444.77 -1.89 -24.50 16 11 C 0.16 5.21 2.78 45.02 0.13 5.34 16 12 H 0.09 2.78 7.57 -2.38 -0.02 2.76 16 13 C -0.14 -5.57 5.77 30.67 0.18 -5.40 16 14 C 0.19 9.16 5.03 86.36 0.43 9.59 16 15 N -0.60 -28.38 2.99 -676.05 -2.02 -30.40 16 16 C -0.25 -12.94 8.57 84.03 0.72 -12.22 16 17 H 0.08 3.81 6.23 -2.91 -0.02 3.79 16 18 C -0.05 -2.84 4.94 84.86 0.42 -2.42 16 19 N -0.94 -55.46 11.23 21.65 0.24 -55.22 16 20 Si 0.96 44.56 29.58 68.60 2.03 46.59 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C 0.16 5.94 3.19 44.83 0.14 6.09 16 25 H 0.02 0.70 6.64 -2.39 -0.02 0.69 16 26 C -0.13 -4.32 7.94 71.98 0.57 -3.74 16 27 C -0.13 -3.80 5.05 30.53 0.15 -3.65 16 28 N -0.50 -13.98 9.59 -177.04 -1.70 -15.67 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.22 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.41 13.74 6.26 -92.71 -0.58 13.16 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H -0.01 -0.38 7.74 -2.39 -0.02 -0.40 16 37 H 0.04 2.51 6.15 -2.39 -0.01 2.50 16 38 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.75 7.44 -2.39 -0.02 1.74 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 2.45 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -66.77 359.84 1.66 -65.11 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.47 Total: 19.66 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 6.59 Total: 26.34 kcal Atomic # 7 Polarization: -130.94 SS G_CDS: -7.31 Total: -138.25 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.07 Total: -0.15 kcal Total: -66.77 1.66 -65.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947780303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.801 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds