Wall clock time and date at job start Tue Mar 31 2020 20:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31923 * 119.02058 * 2 1 4 4 C 1.32132 * 121.06089 * 180.02562 * 3 2 1 5 5 C 1.38997 * 119.12244 * 359.97438 * 4 3 2 6 6 Cl 1.73599 * 120.88526 * 179.97438 * 5 4 3 7 7 C 1.39636 * 118.22319 * 0.25331 * 5 4 3 8 8 C 1.48371 * 120.55811 * 179.74969 * 7 5 4 9 9 O 1.21490 * 119.99972 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99755 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99896 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47242 * 35.00274 * 11 10 8 13 13 C 1.52998 * 109.47061 * 275.00127 * 11 10 8 14 14 C 1.53008 * 109.47020 * 299.99830 * 13 11 10 15 15 C 1.52997 * 109.46969 * 300.00151 * 14 13 11 16 16 C 1.52998 * 109.47373 * 60.00065 * 15 14 13 17 17 H 1.09001 * 109.47231 * 59.99574 * 16 15 14 18 18 N 1.46499 * 109.47499 * 179.97438 * 16 15 14 19 19 C 1.36938 * 120.00092 * 274.99965 * 18 16 15 20 20 H 1.07995 * 119.99768 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99978 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99873 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99863 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46827 * 120.00332 * 23 21 19 26 26 H 1.48499 * 109.46926 * 240.00040 * 23 21 19 27 27 C 1.53000 * 109.47222 * 299.99882 * 16 15 14 28 28 N 1.31523 * 119.01346 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46873 * 90.00151 * 1 2 3 30 30 H 1.08994 * 109.46843 * 209.99599 * 1 2 3 31 31 H 1.08997 * 109.46959 * 329.99923 * 1 2 3 32 32 H 1.07997 * 120.44201 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99903 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47605 * 59.99905 * 13 11 10 35 35 H 1.09001 * 109.47231 * 180.02562 * 13 11 10 36 36 H 1.09002 * 109.47124 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.46849 * 60.00096 * 14 13 11 38 38 H 1.09001 * 109.47290 * 299.99675 * 15 14 13 39 39 H 1.09008 * 109.47145 * 180.02562 * 15 14 13 40 40 H 0.96998 * 120.00107 * 94.99597 * 18 16 15 41 41 H 0.97005 * 119.99730 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.46766 * 299.99976 * 27 16 15 43 43 H 1.09002 * 109.47327 * 179.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1471 1.1536 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1868 0.0112 -0.0005 6 17 5.9228 0.0196 -0.0018 7 6 3.4757 -1.1905 -0.0054 8 6 4.1911 -2.4903 -0.0112 9 8 5.4058 -2.5151 -0.0113 10 7 3.4935 -3.6434 -0.0154 11 6 4.1998 -4.9269 -0.0206 12 1 5.1127 -4.8416 0.5689 13 6 4.5554 -5.3075 -1.4592 14 6 3.2739 -5.4273 -2.2866 15 6 2.3748 -6.5068 -1.6807 16 6 2.0192 -6.1261 -0.2421 17 1 1.4937 -5.1712 -0.2383 18 7 1.1577 -7.1595 0.3378 19 6 -0.1954 -7.1179 0.1315 20 1 -0.6274 -6.3236 -0.4590 21 6 -1.0115 -8.0973 0.6806 22 7 -0.4849 -9.0656 1.3999 23 14 -2.8573 -8.0410 0.3986 24 1 -3.1944 -6.8614 -0.4381 25 1 -3.2899 -9.2801 -0.2962 26 1 -3.5547 -7.9371 1.7055 27 6 3.3006 -6.0064 0.5853 28 7 2.1450 -1.1502 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.9812 2.1506 -0.0001 33 1 2.5237 -3.6236 -0.0150 34 1 5.1960 -4.5385 -1.8908 35 1 5.0806 -6.2627 -1.4631 36 1 3.5272 -5.6989 -3.3114 37 1 2.7484 -4.4724 -2.2827 38 1 2.9003 -7.4617 -1.6846 39 1 1.4620 -6.5925 -2.2705 40 1 1.5458 -7.8731 0.8679 41 1 -1.0553 -9.7498 1.7839 42 1 3.8261 -6.9613 0.5814 43 1 3.0473 -5.7347 1.6101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981370323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:57 Heat of formation + Delta-G solvation = -4.450064 kcal Electronic energy + Delta-G solvation = -27194.034493 eV Core-core repulsion = 23299.526470 eV Total energy + Delta-G solvation = -3894.508023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54561 -41.10002 -39.26549 -37.82352 -36.17447 -35.35642 -34.33475 -34.11545 -32.89758 -30.96415 -29.53426 -29.43627 -26.99654 -25.67546 -24.45542 -23.33947 -22.64268 -22.26788 -20.25616 -19.64913 -19.24286 -18.73548 -17.38533 -17.09937 -16.88834 -16.66869 -16.26785 -16.21730 -15.77517 -15.35463 -15.03652 -14.94323 -14.79512 -14.58335 -14.03732 -13.85166 -13.53682 -13.32088 -13.15638 -13.05109 -12.88628 -12.88477 -12.81089 -12.56671 -12.50917 -12.20611 -12.16012 -12.01318 -11.95006 -11.61343 -11.47817 -11.42256 -11.01169 -10.84176 -10.39251 -10.37300 -10.06704 -8.96840 -7.90987 -5.18705 -0.90673 -0.44558 0.78774 1.49299 1.49710 1.53327 1.59395 1.78830 2.44926 2.57290 2.58613 2.79120 3.19521 3.39001 3.42739 3.64912 3.81182 3.87251 3.91455 4.23179 4.29360 4.31115 4.35148 4.55817 4.65229 4.68951 4.71327 4.72236 4.77695 4.81402 4.92759 5.08148 5.16853 5.21921 5.23042 5.34557 5.39246 5.45599 5.52170 5.56489 5.65521 6.30950 6.33005 6.66617 6.95402 7.37841 8.14002 8.36724 9.32702 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.003305 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.419012 B = 8469.087781 C =10078.066505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.314 3.686 3 N -0.496 5.496 4 C 0.179 3.821 5 C -0.117 4.117 6 Cl -0.002 7.002 7 C 0.130 3.870 8 C 0.562 3.438 9 O -0.527 6.527 10 N -0.690 5.690 11 C 0.157 3.843 12 H 0.093 0.907 13 C -0.121 4.121 14 C -0.106 4.106 15 C -0.127 4.127 16 C 0.177 3.823 17 H 0.041 0.959 18 N -0.737 5.737 19 C -0.231 4.231 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.966 3.034 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.295 1.295 27 C -0.122 4.122 28 N -0.496 5.496 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.221 0.779 33 H 0.412 0.588 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.084 0.916 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.086 21.949 -4.905 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 N -0.210 5.210 4 C 0.010 3.990 5 C -0.150 4.150 6 Cl 0.027 6.973 7 C -0.018 4.018 8 C 0.345 3.655 9 O -0.403 6.403 10 N -0.342 5.342 11 C 0.053 3.947 12 H 0.111 0.889 13 C -0.159 4.159 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.068 3.932 17 H 0.059 0.941 18 N -0.376 5.376 19 C -0.363 4.363 20 H 0.093 0.907 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.796 3.204 24 H -0.189 1.189 25 H -0.225 1.225 26 H -0.223 1.223 27 C -0.161 4.161 28 N -0.214 5.214 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.238 0.762 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.939 21.918 -4.956 24.571 hybrid contribution -0.366 -0.781 0.235 0.894 sum 9.573 21.136 -4.721 23.678 Atomic orbital electron populations 1.20807 0.82622 1.05636 1.05561 1.23988 0.99908 0.82427 0.88899 1.68450 1.09386 1.29946 1.13265 1.24029 0.88861 0.98097 0.88027 1.22997 0.89870 0.96140 1.05962 1.98437 1.04271 1.98608 1.95971 1.21633 0.90119 0.94262 0.95752 1.17831 0.86601 0.83261 0.77832 1.90847 1.12652 1.86880 1.49917 1.46075 1.11444 1.04912 1.71730 1.21002 0.95231 0.80960 0.97516 0.88906 1.21864 0.97582 1.02427 0.94027 1.21415 0.95564 0.98320 0.99088 1.22098 0.98458 0.98500 0.97632 1.20356 0.89925 0.91225 0.91647 0.94109 1.42625 1.03373 1.29883 1.61701 1.19625 0.84576 1.07190 1.24955 0.90653 1.25486 1.02012 0.97947 1.01373 1.69819 1.35247 1.16303 1.40756 0.85167 0.80962 0.77314 0.76937 1.18855 1.22462 1.22286 1.21983 0.96002 0.98939 0.99130 1.68392 1.07299 1.31993 1.13670 0.87671 0.89020 0.87527 0.76241 0.74994 0.91540 0.89647 0.91202 0.92725 0.92981 0.94134 0.79582 0.94226 0.89795 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 10.31 71.24 0.73 -0.51 16 2 C 0.31 6.32 7.64 138.79 1.06 7.38 16 3 N -0.50 -9.12 10.31 -187.76 -1.94 -11.05 16 4 C 0.18 2.83 11.14 84.83 0.95 3.77 16 5 C -0.12 -2.41 6.40 22.79 0.15 -2.27 16 6 Cl 0.00 -0.04 26.25 -2.72 -0.07 -0.11 16 7 C 0.13 3.22 6.79 41.98 0.29 3.51 16 8 C 0.56 15.31 7.79 86.94 0.68 15.99 16 9 O -0.53 -15.78 13.81 -3.68 -0.05 -15.83 16 10 N -0.69 -18.32 4.23 -444.91 -1.88 -20.20 16 11 C 0.16 4.10 2.78 44.99 0.13 4.22 16 12 H 0.09 2.40 7.58 -2.39 -0.02 2.39 16 13 C -0.12 -2.91 5.60 30.60 0.17 -2.74 16 14 C -0.11 -2.77 5.77 30.60 0.18 -2.59 16 15 C -0.13 -4.23 5.50 30.59 0.17 -4.06 16 16 C 0.18 6.49 2.60 44.99 0.12 6.60 16 17 H 0.04 1.53 6.44 -2.39 -0.02 1.51 16 18 N -0.74 -35.60 5.12 -322.95 -1.65 -37.25 16 19 C -0.23 -12.44 9.93 84.03 0.83 -11.60 16 20 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 21 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 23 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 C -0.12 -3.72 5.08 30.60 0.16 -3.56 16 28 N -0.50 -11.89 9.59 -177.04 -1.70 -13.59 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.22 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.41 11.36 6.25 -92.71 -0.58 10.78 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.45 7.60 -2.39 -0.02 1.44 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 41 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 42 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -66.15 367.36 0.84 -65.32 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.24 Total: 33.28 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.06 Total: 10.33 kcal Atomic # 7 Polarization: -133.50 SS G_CDS: -6.89 Total: -140.38 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.05 Total: -15.83 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.07 Total: -0.11 kcal Total: -66.15 0.84 -65.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981370323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.866 kcal (2) G-P(sol) polarization free energy of solvation -66.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds