Wall clock time and date at job start Tue Mar 31 2020 21:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99891 * 2 1 4 4 C 1.54330 * 109.88292 * 238.90375 * 2 1 3 5 5 H 1.08991 * 110.72004 * 100.02588 * 4 2 1 6 6 N 1.46499 * 110.71556 * 336.75238 * 4 2 1 7 7 C 1.36938 * 119.99886 * 155.00001 * 6 4 2 8 8 H 1.08008 * 120.00000 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00374 * 179.97438 * 7 6 4 10 10 N 1.31623 * 120.00051 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00070 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46850 * 90.00455 * 11 9 7 13 13 H 1.48506 * 109.47056 * 209.99914 * 11 9 7 14 14 H 1.48500 * 109.47412 * 330.00296 * 11 9 7 15 15 C 1.55155 * 102.94292 * 218.39370 * 4 2 1 16 16 C 1.54907 * 101.58383 * 35.49718 * 15 4 2 17 17 N 1.47026 * 109.88297 * 121.09824 * 2 1 3 18 18 C 1.34780 * 125.64391 * 298.39213 * 17 2 1 19 19 O 1.21571 * 119.99915 * 359.97438 * 18 17 2 20 20 C 1.47662 * 119.99773 * 180.02562 * 18 17 2 21 21 N 1.31830 * 126.45844 * 359.68074 * 20 18 17 22 22 N 1.28481 * 110.13030 * 179.85782 * 21 20 18 23 23 H 0.97000 * 124.93258 * 180.14960 * 22 21 20 24 24 C 1.35638 * 110.13206 * 0.42365 * 22 21 20 25 25 C 1.50700 * 126.43491 * 179.74712 * 24 22 21 26 26 C 1.53004 * 117.49600 * 8.74504 * 25 24 22 27 27 C 1.53002 * 117.49753 * 300.09083 * 25 24 22 28 28 C 1.35459 * 107.13414 * 359.74287 * 24 22 21 29 29 Cl 1.73598 * 127.24101 * 179.97438 * 28 24 22 30 30 H 1.08994 * 109.46761 * 300.36028 * 1 2 3 31 31 H 1.08996 * 109.46781 * 60.35871 * 1 2 3 32 32 H 1.09001 * 109.47129 * 180.35646 * 1 2 3 33 33 H 0.96995 * 120.00379 * 334.99928 * 6 4 2 34 34 H 0.97000 * 120.00056 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00015 * 277.42463 * 15 4 2 36 36 H 1.09000 * 111.00890 * 153.57681 * 15 4 2 37 37 H 1.08997 * 110.36783 * 204.15179 * 16 15 4 38 38 H 1.08997 * 110.45914 * 81.87830 * 16 15 4 39 39 H 1.08992 * 115.55116 * 154.41214 * 25 24 22 40 40 H 1.09001 * 117.49768 * 0.02562 * 26 25 24 41 41 H 1.08996 * 117.49830 * 145.01868 * 26 25 24 42 42 H 1.09006 * 117.49510 * 214.97978 * 27 25 24 43 43 H 1.08998 * 117.49768 * 359.96934 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2428 5 1 2.3529 -0.0461 -2.0200 6 7 1.0472 -1.6855 -1.7474 7 6 1.0606 -2.0618 -3.0640 8 1 1.8139 -1.6682 -3.7305 9 6 0.1061 -2.9491 -3.5421 10 7 -0.8122 -3.4284 -2.7300 11 14 0.1241 -3.4617 -5.3383 12 1 0.9696 -4.6719 -5.4992 13 1 -1.2610 -3.7633 -5.7809 14 1 0.6779 -2.3577 -6.1627 15 6 3.2876 -1.5143 -0.6924 16 6 2.8145 -1.8794 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 1.1421 0.6235 2.7186 20 6 2.3726 -1.1728 3.5628 21 7 3.1041 -2.2621 3.4354 22 7 3.4315 -2.7128 4.5932 23 1 3.9704 -3.5041 4.7491 24 6 2.9090 -1.9248 5.5657 25 6 3.0600 -2.1191 7.0525 26 6 4.0431 -3.1905 7.5287 27 6 2.5356 -3.4259 7.6511 28 6 2.2259 -0.9304 4.9497 29 17 1.3534 0.3678 5.7027 30 1 -0.3632 0.5194 0.8867 31 1 -0.3633 0.5082 -0.8932 32 1 -0.3633 -1.0277 0.0064 33 1 0.3705 -2.0388 -1.1489 34 1 -1.4789 -4.0487 -3.0641 35 1 4.1654 -0.8689 -0.6604 36 1 3.4852 -2.4112 -1.2796 37 1 3.6716 -2.0339 1.3922 38 1 2.1891 -2.7718 0.7147 39 1 2.9682 -1.2164 7.6563 40 1 4.5808 -3.7545 6.7665 41 1 4.5977 -2.9927 8.4459 42 1 2.0989 -3.3828 8.6489 43 1 2.0808 -4.1448 6.9696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986474715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:56 Heat of formation + Delta-G solvation = 68.276354 kcal Electronic energy + Delta-G solvation = -27206.729056 eV Core-core repulsion = 23315.374687 eV Total energy + Delta-G solvation = -3891.354369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.95436 -41.12187 -38.81972 -38.15585 -37.50540 -35.74329 -33.64859 -32.73559 -32.17392 -31.64106 -30.41262 -26.75783 -25.90906 -25.35711 -24.44713 -23.34905 -22.95329 -22.18459 -20.99503 -19.66355 -19.40520 -19.02323 -17.80604 -17.54488 -17.04117 -16.63936 -16.34191 -16.05008 -15.83048 -15.65902 -15.30754 -14.89614 -14.72803 -14.26627 -14.16297 -13.84765 -13.50486 -13.22664 -13.14520 -13.00859 -12.83334 -12.64064 -12.54165 -12.46679 -12.25780 -12.12523 -12.02837 -11.99975 -11.81606 -11.59441 -11.46679 -11.39666 -10.99930 -10.89282 -10.49776 -9.77453 -9.62098 -8.97758 -7.89722 -5.18074 0.30665 0.64166 0.97610 1.50847 1.51782 1.60091 1.69830 2.04833 2.20427 2.59459 2.86696 3.12483 3.36533 3.41959 3.62686 3.70722 3.82848 3.90875 3.95201 4.01625 4.08680 4.29032 4.32914 4.42495 4.47428 4.58976 4.61368 4.74455 4.82463 4.87185 4.98013 4.99929 5.07045 5.10311 5.18815 5.21399 5.35773 5.39145 5.46957 5.59129 5.83652 6.31264 6.45502 6.56695 7.06836 7.38466 8.12112 8.36270 9.33723 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.002819 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.129050 B = 9930.783562 C =10581.026691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.132 3.868 3 H 0.088 0.912 4 C 0.165 3.835 5 H 0.080 0.920 6 N -0.724 5.724 7 C -0.233 4.233 8 H 0.082 0.918 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.971 3.029 12 H -0.289 1.289 13 H -0.302 1.302 14 H -0.268 1.268 15 C -0.147 4.147 16 C 0.118 3.882 17 N -0.595 5.595 18 C 0.602 3.398 19 O -0.550 6.550 20 C -0.013 4.013 21 N -0.241 5.241 22 N -0.356 5.356 23 H 0.466 0.534 24 C 0.086 3.914 25 C -0.113 4.113 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.123 4.123 29 Cl -0.014 7.014 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.376 0.624 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.878 0.670 23.038 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 H 0.106 0.894 4 C 0.055 3.945 5 H 0.098 0.902 6 N -0.365 5.365 7 C -0.364 4.364 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.800 3.200 12 H -0.216 1.216 13 H -0.229 1.229 14 H -0.193 1.193 15 C -0.188 4.188 16 C -0.005 4.005 17 N -0.327 5.327 18 C 0.389 3.611 19 O -0.427 6.427 20 C -0.173 4.173 21 N -0.077 5.077 22 N -0.074 5.074 23 H 0.316 0.684 24 C -0.041 4.041 25 C -0.133 4.133 26 C -0.191 4.191 27 C -0.198 4.198 28 C -0.160 4.160 29 Cl 0.014 6.986 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.156 0.844 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.919 0.653 22.265 26.265 hybrid contribution -1.027 -0.342 -0.306 1.125 sum 12.892 0.311 21.958 25.465 Atomic orbital electron populations 1.21757 0.95449 1.00942 1.01254 1.21949 0.94360 0.96351 0.84513 0.89422 1.21419 0.89109 0.91355 0.92641 0.90244 1.42696 1.33589 1.52167 1.08068 1.19650 1.09856 1.19657 0.87284 0.89993 1.25506 0.98324 1.01276 1.01627 1.69836 1.19578 1.36839 1.35903 0.85178 0.75966 0.78205 0.80608 1.21603 1.22941 1.19307 1.23403 0.98821 1.01864 0.94718 1.22343 0.95113 0.86879 0.96127 1.48463 1.51365 1.28709 1.04203 1.16724 0.80060 0.83575 0.80705 1.90775 1.40871 1.27741 1.83342 1.21637 1.05227 0.97146 0.93320 1.73782 1.15159 1.10943 1.07809 1.43317 1.38911 1.23797 1.01409 0.68374 1.20473 0.98669 0.92187 0.92809 1.20636 1.09749 0.97346 0.85564 1.23232 0.92443 0.98945 1.04433 1.23226 0.97377 0.95875 1.03282 1.20527 1.06941 0.97507 0.91040 1.98340 1.74093 1.45898 1.80219 0.92902 0.91874 0.94325 0.78984 0.94299 0.89065 0.90569 0.88113 0.93587 0.84382 0.87634 0.85543 0.86077 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 8.51 71.98 0.61 -4.90 16 2 C 0.13 4.82 3.43 45.34 0.16 4.98 16 3 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 4 C 0.16 6.28 3.48 46.18 0.16 6.44 16 5 H 0.08 2.90 8.09 -2.39 -0.02 2.88 16 6 N -0.72 -35.15 4.55 -317.33 -1.44 -36.59 16 7 C -0.23 -12.37 9.96 84.03 0.84 -11.53 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 10 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 11 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 13 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 15 C -0.15 -4.75 6.77 31.98 0.22 -4.54 16 16 C 0.12 3.83 6.13 86.86 0.53 4.36 16 17 N -0.59 -21.02 3.07 -791.63 -2.43 -23.45 16 18 C 0.60 22.04 7.65 86.73 0.66 22.70 16 19 O -0.55 -22.52 14.91 -3.94 -0.06 -22.58 16 20 C -0.01 -0.39 6.96 42.45 0.30 -0.09 16 21 N -0.24 -6.11 9.34 -48.17 -0.45 -6.56 16 22 N -0.36 -6.06 6.77 -47.55 -0.32 -6.38 16 23 H 0.47 3.98 7.94 -219.99 -1.75 2.24 16 24 C 0.09 1.59 6.75 41.33 0.28 1.87 16 25 C -0.11 -1.25 6.12 -11.54 -0.07 -1.33 16 26 C -0.15 -0.75 10.15 30.62 0.31 -0.44 16 27 C -0.16 -1.22 10.24 30.62 0.31 -0.90 16 28 C -0.12 -3.27 6.79 22.44 0.15 -3.12 16 29 Cl -0.01 -0.38 28.02 -2.72 -0.08 -0.45 16 30 H 0.05 2.14 6.88 -2.39 -0.02 2.13 16 31 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.04 1.77 6.20 -2.39 -0.01 1.75 16 33 H 0.38 20.18 5.67 -92.71 -0.53 19.65 16 34 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.10 2.85 6.20 -2.39 -0.01 2.84 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.14 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.11 0.25 7.16 -2.39 -0.02 0.23 16 41 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.21 366.57 1.26 -69.95 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -1.20 Total: 27.59 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 4.92 Total: 9.74 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -4.36 Total: -131.83 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.06 Total: -22.58 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.45 kcal Total: -71.21 1.26 -69.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986474715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.230 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds