Wall clock time and date at job start Tue Mar 31 2020 20:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31923 * 119.01662 * 2 1 4 4 C 1.32137 * 121.05709 * 180.02562 * 3 2 1 5 5 C 1.38980 * 119.12488 * 359.97438 * 4 3 2 6 6 Cl 1.73602 * 120.88872 * 180.02562 * 5 4 3 7 7 C 1.39642 * 118.22916 * 0.02562 * 5 4 3 8 8 C 1.48362 * 120.56614 * 179.97438 * 7 5 4 9 9 O 1.21492 * 120.00021 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99882 * 179.97438 * 8 7 5 11 11 C 1.46502 * 119.99505 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.50002 * 35.01052 * 11 10 8 13 13 C 1.53036 * 109.49890 * 274.93766 * 11 10 8 14 14 C 1.53104 * 109.50528 * 301.38086 * 13 11 10 15 15 C 1.53188 * 109.33264 * 298.66025 * 14 13 11 16 16 N 1.46918 * 108.77527 * 54.63386 * 15 14 13 17 17 C 1.36947 * 120.63215 * 126.41573 * 16 15 14 18 18 H 1.07997 * 120.00230 * 208.99157 * 17 16 15 19 19 C 1.38812 * 119.99667 * 28.98434 * 17 16 15 20 20 N 1.31617 * 120.00179 * 15.03886 * 19 17 16 21 21 Si 1.86803 * 119.99693 * 195.03896 * 19 17 16 22 22 H 1.48500 * 109.47146 * 60.00254 * 21 19 17 23 23 H 1.48499 * 109.46993 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47202 * 300.00060 * 21 19 17 25 25 C 1.46926 * 118.74207 * 306.38699 * 16 15 14 26 26 H 1.09000 * 109.70556 * 293.75504 * 25 16 15 27 27 C 1.52999 * 109.59046 * 173.39644 * 25 16 15 28 28 N 1.31519 * 119.01904 * 180.30439 * 2 1 3 29 29 H 1.08996 * 109.47273 * 89.99822 * 1 2 3 30 30 H 1.09003 * 109.46777 * 210.00004 * 1 2 3 31 31 H 1.08998 * 109.46955 * 329.99597 * 1 2 3 32 32 H 1.08004 * 120.43553 * 180.02562 * 4 3 2 33 33 H 0.96997 * 120.00267 * 359.73374 * 10 8 7 34 34 H 1.08998 * 109.46036 * 61.43955 * 13 11 10 35 35 H 1.09004 * 109.45923 * 181.39748 * 13 11 10 36 36 H 1.09000 * 109.48652 * 178.69639 * 14 13 11 37 37 H 1.09005 * 109.51125 * 58.63201 * 14 13 11 38 38 H 1.08999 * 109.58603 * 294.84002 * 15 14 13 39 39 H 1.09002 * 109.58737 * 174.42311 * 15 14 13 40 40 H 0.97001 * 119.99929 * 179.97438 * 20 19 17 41 41 H 1.09006 * 109.46834 * 300.71493 * 27 25 16 42 42 H 1.09001 * 109.47066 * 60.71240 * 27 25 16 43 43 H 1.08992 * 109.47163 * 180.71299 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1470 1.1536 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0115 -0.0005 6 17 5.9227 0.0198 -0.0005 7 6 3.4758 -1.1904 -0.0005 8 6 4.1912 -2.4902 -0.0011 9 8 5.4058 -2.5150 -0.0011 10 7 3.4935 -3.6434 -0.0006 11 6 4.2000 -4.9268 -0.0005 12 1 5.1129 -4.8396 0.5885 13 6 4.5546 -5.3147 -1.4378 14 6 3.2748 -5.4053 -2.2734 15 6 2.3639 -6.4899 -1.6898 16 7 2.1364 -6.2014 -0.2674 17 6 0.8643 -6.1166 0.2326 18 1 0.6592 -5.4824 1.0824 19 6 -0.1616 -6.8458 -0.3529 20 7 0.1197 -7.8299 -1.1804 21 14 -1.9413 -6.4302 0.0336 22 1 -2.2214 -5.0289 -0.3703 23 1 -2.8375 -7.3495 -0.7127 24 1 -2.1798 -6.5823 1.4913 25 6 3.2995 -6.0061 0.6088 26 1 3.8554 -6.9397 0.6953 27 6 2.8288 -5.5591 1.9943 28 7 2.1451 -1.1501 -0.0061 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 3.9811 2.1508 -0.0001 33 1 2.5238 -3.6236 0.0041 34 1 5.2155 -4.5605 -1.8650 35 1 5.0582 -6.2814 -1.4393 36 1 3.5296 -5.6590 -3.3024 37 1 2.7577 -4.4460 -2.2525 38 1 2.8427 -7.4637 -1.7932 39 1 1.4112 -6.4909 -2.2195 40 1 -0.5972 -8.3396 -1.5892 41 1 2.2690 -4.6281 1.9050 42 1 2.1884 -6.3282 2.4260 43 1 3.6937 -5.4026 2.6388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993938619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:59 Heat of formation + Delta-G solvation = 20.063042 kcal Electronic energy + Delta-G solvation = -28212.204869 eV Core-core repulsion = 24318.759814 eV Total energy + Delta-G solvation = -3893.445055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.50758 -40.98747 -39.16439 -37.79704 -35.68669 -35.22494 -34.12867 -33.93286 -33.33432 -31.11988 -29.43414 -28.06821 -26.99693 -26.66548 -24.48638 -23.59951 -22.44759 -22.05307 -20.33887 -19.63440 -18.85962 -18.21478 -17.32922 -17.11639 -16.94252 -16.48465 -16.33071 -16.00154 -15.65338 -15.30964 -14.97897 -14.71341 -14.58414 -14.50860 -14.24165 -13.93672 -13.56082 -13.30163 -12.97090 -12.87585 -12.86480 -12.69417 -12.56869 -12.52175 -12.42624 -12.32442 -12.15335 -12.13775 -11.91807 -11.67765 -11.41117 -11.33708 -11.03675 -10.45777 -10.35460 -10.33138 -9.94936 -8.58750 -7.78330 -5.24447 -0.87490 -0.41478 0.80861 1.52419 1.54051 1.59501 1.59726 1.89124 2.48684 2.56862 2.62866 2.81036 3.25508 3.37984 3.42716 3.60509 3.82611 3.99912 4.05446 4.20640 4.27337 4.39424 4.56318 4.66248 4.68147 4.71914 4.76967 4.78529 4.93941 4.99256 5.03210 5.11463 5.20895 5.22299 5.33994 5.41989 5.46534 5.54880 5.61024 5.76523 5.81926 6.46292 6.47900 6.71347 7.06076 7.22867 7.92534 8.45040 9.27932 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.004454 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.100361 B = 6285.600014 C = 7821.642267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.313 3.687 3 N -0.495 5.495 4 C 0.179 3.821 5 C -0.116 4.116 6 Cl -0.002 7.002 7 C 0.132 3.868 8 C 0.556 3.444 9 O -0.534 6.534 10 N -0.674 5.674 11 C 0.140 3.860 12 H 0.090 0.910 13 C -0.114 4.114 14 C -0.127 4.127 15 C 0.179 3.821 16 N -0.596 5.596 17 C -0.245 4.245 18 H 0.076 0.924 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.957 3.043 22 H -0.275 1.275 23 H -0.303 1.303 24 H -0.278 1.278 25 C 0.156 3.844 26 H 0.038 0.962 27 C -0.128 4.128 28 N -0.496 5.496 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.223 0.777 33 H 0.414 0.586 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.045 0.955 38 H -0.002 1.002 39 H 0.056 0.944 40 H 0.246 0.754 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 17.871 2.373 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 N -0.210 5.210 4 C 0.009 3.991 5 C -0.149 4.149 6 Cl 0.027 6.973 7 C -0.016 4.016 8 C 0.339 3.661 9 O -0.410 6.410 10 N -0.324 5.324 11 C 0.034 3.966 12 H 0.108 0.892 13 C -0.153 4.153 14 C -0.166 4.166 15 C 0.054 3.946 16 N -0.320 5.320 17 C -0.375 4.375 18 H 0.094 0.906 19 C -0.243 4.243 20 N -0.582 5.582 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.230 1.230 24 H -0.204 1.204 25 C 0.050 3.950 26 H 0.056 0.944 27 C -0.185 4.185 28 N -0.214 5.214 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.239 0.761 33 H 0.252 0.748 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.016 0.984 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.317 17.644 2.309 18.882 hybrid contribution -0.398 -0.502 -0.145 0.657 sum 5.919 17.142 2.163 18.264 Atomic orbital electron populations 1.20790 0.82749 1.05603 1.05395 1.23970 0.99877 0.82435 0.89037 1.68444 1.09363 1.29811 1.13352 1.24028 0.88849 0.98023 0.88155 1.22984 0.89831 0.96065 1.06029 1.98430 1.04293 1.98606 1.95991 1.21660 0.90082 0.94318 0.95550 1.17893 0.86655 0.83318 0.78240 1.90821 1.12595 1.86920 1.50703 1.45878 1.11596 1.04495 1.70418 1.21517 0.95397 0.82564 0.97103 0.89245 1.21731 0.97142 1.01366 0.95014 1.21968 0.96481 0.99649 0.98519 1.20580 0.97047 0.92496 0.84497 1.44311 1.01019 1.82950 1.03672 1.19397 0.84747 1.19225 1.14120 0.90621 1.25726 1.01716 0.95983 1.00885 1.70164 1.31523 1.21303 1.35196 0.85501 0.81002 0.77411 0.77501 1.20059 1.22955 1.20446 1.20858 0.88815 0.94409 0.90938 0.94426 1.21701 1.00682 1.00922 0.95221 1.68425 1.07435 1.32043 1.13485 0.88023 0.89208 0.87220 0.76101 0.74811 0.92327 0.90856 0.91971 0.93617 0.98438 0.92607 0.94531 0.93057 0.93266 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 10.31 71.24 0.73 -0.79 16 2 C 0.31 7.40 7.64 138.80 1.06 8.46 16 3 N -0.49 -10.45 10.31 -187.77 -1.94 -12.39 16 4 C 0.18 3.30 11.14 84.82 0.94 4.25 16 5 C -0.12 -2.78 6.40 22.79 0.15 -2.64 16 6 Cl 0.00 -0.05 26.25 -2.72 -0.07 -0.12 16 7 C 0.13 3.84 6.79 41.98 0.29 4.12 16 8 C 0.56 18.12 7.79 86.94 0.68 18.80 16 9 O -0.53 -18.51 13.81 -3.69 -0.05 -18.56 16 10 N -0.67 -22.66 3.47 -444.53 -1.54 -24.20 16 11 C 0.14 4.75 2.32 45.07 0.10 4.85 16 12 H 0.09 2.90 7.58 -2.39 -0.02 2.89 16 13 C -0.11 -3.83 5.58 30.64 0.17 -3.66 16 14 C -0.13 -4.76 5.93 30.69 0.18 -4.58 16 15 C 0.18 8.28 5.29 86.36 0.46 8.74 16 16 N -0.60 -27.27 2.65 -675.23 -1.79 -29.06 16 17 C -0.24 -12.24 8.61 84.03 0.72 -11.52 16 18 H 0.08 3.65 6.20 -2.91 -0.02 3.63 16 19 C -0.05 -2.53 4.96 84.86 0.42 -2.11 16 20 N -0.94 -53.26 11.14 21.65 0.24 -53.02 16 21 Si 0.96 42.90 29.58 68.60 2.03 44.93 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 C 0.16 5.98 3.20 44.98 0.14 6.12 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 C -0.13 -4.46 7.72 71.98 0.56 -3.90 16 28 N -0.50 -14.16 9.59 -177.05 -1.70 -15.86 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.41 15.09 7.14 -92.71 -0.66 14.42 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 1.78 7.53 -2.38 -0.02 1.76 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.06 2.95 6.06 -2.39 -0.01 2.93 16 40 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.05 1.81 6.37 -2.38 -0.02 1.80 16 42 H 0.05 1.86 7.66 -2.39 -0.02 1.84 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.49 359.98 2.18 -59.32 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.39 Total: 22.82 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: 6.61 Total: 26.14 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -6.72 Total: -134.53 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.05 Total: -18.56 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.07 Total: -0.12 kcal Total: -61.49 2.18 -59.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993938619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.381 kcal (2) G-P(sol) polarization free energy of solvation -61.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds