Wall clock time and date at job start Tue Mar 31 2020 20:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.46963 * 2 1 4 4 N 1.34237 * 126.28112 * 265.16738 * 3 2 1 5 5 H 0.97002 * 125.73830 * 0.02960 * 4 3 2 6 6 N 1.39930 * 108.52389 * 180.23253 * 4 3 2 7 7 C 1.30530 * 108.89218 * 359.76412 * 6 4 3 8 8 Cl 1.73602 * 126.00327 * 180.02562 * 7 6 4 9 9 C 1.38067 * 126.28226 * 85.00127 * 3 2 1 10 10 C 1.47383 * 126.42272 * 0.03495 * 9 3 2 11 11 O 1.21612 * 120.00144 * 269.71257 * 10 9 3 12 12 N 1.34777 * 120.00267 * 89.71015 * 10 9 3 13 13 C 1.46498 * 120.00095 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46909 * 180.02562 * 13 12 10 15 15 C 1.29454 * 117.69515 * 95.00396 * 14 13 12 16 16 C 1.50316 * 123.65460 * 180.85752 * 15 14 13 17 17 N 1.47012 * 109.16472 * 349.02174 * 16 15 14 18 18 C 1.36937 * 121.37477 * 222.96977 * 17 16 15 19 19 H 1.07997 * 120.00386 * 155.96447 * 18 17 16 20 20 C 1.38818 * 120.00162 * 335.96978 * 18 17 16 21 21 N 1.31616 * 119.99424 * 344.51716 * 20 18 17 22 22 Si 1.86793 * 120.00033 * 164.51677 * 20 18 17 23 23 H 1.48507 * 109.47179 * 90.00114 * 22 20 18 24 24 H 1.48501 * 109.47307 * 209.99995 * 22 20 18 25 25 H 1.48499 * 109.47498 * 330.00025 * 22 20 18 26 26 C 1.47334 * 117.25050 * 42.94171 * 17 16 15 27 27 C 1.49972 * 117.69467 * 274.73777 * 14 13 12 28 28 H 1.08997 * 109.47095 * 60.00201 * 1 2 3 29 29 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47514 * 300.00125 * 1 2 3 31 31 H 1.09002 * 109.46869 * 239.99981 * 2 1 3 32 32 H 1.08997 * 109.47095 * 119.99799 * 2 1 3 33 33 H 0.96999 * 120.00004 * 0.02562 * 12 10 9 34 34 H 1.08997 * 109.47308 * 60.00350 * 13 12 10 35 35 H 1.09001 * 109.47300 * 300.00437 * 13 12 10 36 36 H 1.08004 * 118.17621 * 0.87886 * 15 14 13 37 37 H 1.09004 * 109.52565 * 108.92300 * 16 15 14 38 38 H 1.09004 * 109.52817 * 229.11696 * 16 15 14 39 39 H 0.97005 * 119.99607 * 179.97438 * 21 20 18 40 40 H 1.09009 * 109.77415 * 57.81374 * 26 17 16 41 41 H 1.09001 * 109.77952 * 178.61777 * 26 17 16 42 42 H 1.09000 * 109.31400 * 281.29459 * 27 14 13 43 43 H 1.08997 * 109.31188 * 40.72365 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3830 2.1393 -1.0783 5 1 2.3561 1.8312 -1.9977 6 7 2.7983 3.4059 -0.6526 7 6 2.7015 3.4676 0.6477 8 17 3.1015 4.8369 1.6370 9 6 2.2132 2.2234 1.1087 10 6 1.9522 1.8509 2.5106 11 8 0.8567 2.0513 2.9992 12 7 2.9276 1.2882 3.2512 13 6 2.6683 0.9185 4.6449 14 6 3.9122 0.3144 5.2440 15 6 4.7012 1.0968 5.9082 16 6 5.9843 0.6407 6.5447 17 7 6.0421 -0.8280 6.5157 18 6 6.4696 -1.5462 7.6004 19 1 6.1572 -2.5724 7.7258 20 6 7.3044 -0.9553 8.5390 21 7 7.9287 0.1669 8.2503 22 14 7.5418 -1.7527 10.2114 23 1 8.6875 -2.6957 10.1520 24 1 7.8164 -0.7034 11.2257 25 1 6.3103 -2.4931 10.5861 26 6 5.6204 -1.4953 5.2717 27 6 4.1456 -1.1521 5.0339 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8015 1.1287 2.8617 34 1 1.8565 0.1922 4.6831 35 1 2.3877 1.8071 5.2104 36 1 4.4218 2.1350 6.0111 37 1 6.8304 1.0494 5.9922 38 1 6.0215 0.9863 7.5778 39 1 8.5118 0.5801 8.9063 40 1 6.2253 -1.1378 4.4382 41 1 5.7346 -2.5744 5.3750 42 1 3.5235 -1.7190 5.7265 43 1 3.8759 -1.4172 4.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000766573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:32 Heat of formation + Delta-G solvation = 62.275982 kcal Electronic energy + Delta-G solvation = -26630.448765 eV Core-core repulsion = 22738.834200 eV Total energy + Delta-G solvation = -3891.614564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90314 -39.30575 -37.69655 -37.08839 -34.89730 -34.57124 -32.91455 -31.79557 -30.87845 -29.93630 -29.61244 -26.93981 -24.78049 -24.08555 -22.80870 -22.34755 -22.15305 -21.05548 -19.95713 -18.33484 -17.64230 -16.84889 -16.21604 -15.68399 -15.64228 -15.39273 -15.15403 -15.03957 -14.49869 -14.21164 -13.95101 -13.72243 -13.53171 -13.36253 -13.13038 -12.85175 -12.39668 -12.23995 -12.18858 -12.02883 -11.75952 -11.63457 -11.58089 -11.37647 -11.02000 -10.93059 -10.73734 -10.43145 -10.34076 -10.06749 -9.84665 -9.80576 -9.61004 -9.11517 -8.95891 -8.69487 -8.06866 -6.76316 -5.81484 -3.20226 1.16001 1.16691 1.85054 2.45675 2.54044 2.68812 3.36966 3.44210 3.46402 3.61685 4.03009 4.33679 4.48100 4.61347 4.73838 4.88824 5.00322 5.12032 5.17351 5.35144 5.39130 5.41444 5.50797 5.55459 5.60788 5.81916 5.83249 5.95346 6.05958 6.14867 6.30950 6.44932 6.52628 6.57353 6.71009 6.84916 6.90364 7.15968 7.24636 7.31675 7.58828 7.71638 7.81239 8.23688 8.36266 9.17688 9.80557 10.38419 11.28951 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002600 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.908081 B =10767.562369 C =11539.195778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 C 0.147 3.853 4 N -0.447 5.447 5 H 0.448 0.552 6 N -0.276 5.276 7 C 0.160 3.840 8 Cl 0.024 6.976 9 C -0.266 4.266 10 C 0.594 3.406 11 O -0.533 6.533 12 N -0.709 5.709 13 C 0.157 3.843 14 C -0.168 4.168 15 C -0.122 4.122 16 C 0.194 3.806 17 N -0.595 5.595 18 C -0.247 4.247 19 H 0.068 0.932 20 C -0.001 4.001 21 N -0.909 5.909 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.144 3.856 27 C -0.089 4.089 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.403 0.597 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 2.197 -19.704 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C 0.014 3.986 4 N -0.155 5.155 5 H 0.294 0.706 6 N -0.102 5.102 7 C -0.033 4.033 8 Cl 0.051 6.949 9 C -0.281 4.281 10 C 0.377 3.623 11 O -0.409 6.409 12 N -0.359 5.359 13 C 0.035 3.965 14 C -0.169 4.169 15 C -0.143 4.143 16 C 0.069 3.931 17 N -0.318 5.318 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.554 5.554 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.128 4.128 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.237 0.763 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.587 3.198 -20.132 23.957 hybrid contribution 0.471 -0.612 0.951 1.225 sum -12.116 2.586 -19.181 22.834 Atomic orbital electron populations 1.21779 0.92843 1.02974 1.03266 1.20418 0.97523 0.87805 1.05000 1.21460 0.95893 0.95148 0.86056 1.45839 1.51378 1.09328 1.08986 0.70601 1.77168 1.23172 0.98979 1.10839 1.22586 0.99751 0.90337 0.90609 1.98438 1.91949 1.39633 1.64835 1.19821 1.18924 0.94519 0.94870 1.17117 0.84252 0.77190 0.83723 1.90790 1.23687 1.53854 1.72576 1.46199 1.14952 1.61698 1.13085 1.20498 0.96635 0.99122 0.80243 1.20480 0.96580 0.96285 1.03521 1.23296 0.97612 0.98100 0.95267 1.19764 0.89236 0.83820 1.00304 1.44125 1.76186 1.01348 1.10182 1.19162 1.22666 0.96761 0.99008 0.91396 1.24987 0.96835 0.98179 0.99892 1.70007 1.30861 1.20478 1.34076 0.86266 0.77932 0.78347 0.84055 1.21454 1.21560 1.20522 1.20987 0.91305 0.96623 0.89368 1.20775 1.00147 0.92450 0.99412 0.92517 0.91105 0.91030 0.89540 0.88248 0.76298 0.91418 0.91478 0.88706 0.94092 0.88879 0.93592 0.95918 0.92517 0.91722 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.07 -0.42 6.27 -27.89 -0.17 -0.59 16 3 C 0.15 1.30 6.55 -81.61 -0.53 0.76 16 4 N -0.45 -3.53 7.28 33.86 0.25 -3.29 16 5 H 0.45 1.80 8.96 -182.72 -1.64 0.17 16 6 N -0.28 -3.15 12.64 33.18 0.42 -2.73 16 7 C 0.16 1.99 7.89 -16.91 -0.13 1.86 16 8 Cl 0.02 0.29 29.19 -51.86 -1.51 -1.22 16 9 C -0.27 -3.18 5.88 -105.04 -0.62 -3.80 16 10 C 0.59 8.19 7.26 -12.54 -0.09 8.10 16 11 O -0.53 -9.09 17.11 5.27 0.09 -9.00 16 12 N -0.71 -9.13 5.54 -62.58 -0.35 -9.48 16 13 C 0.16 2.26 5.66 -5.19 -0.03 2.23 16 14 C -0.17 -2.76 5.22 -100.99 -0.53 -3.29 16 15 C -0.12 -2.26 9.47 -35.78 -0.34 -2.60 16 16 C 0.19 4.48 5.23 -5.10 -0.03 4.45 16 17 N -0.60 -14.50 3.01 -173.56 -0.52 -15.02 16 18 C -0.25 -6.63 9.71 -15.06 -0.15 -6.78 16 19 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 20 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 21 N -0.91 -25.83 11.08 55.49 0.61 -25.22 16 22 Si 0.90 21.45 29.58 -169.99 -5.03 16.42 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.14 2.85 6.59 -3.44 -0.02 2.82 16 27 C -0.09 -1.46 5.95 -28.09 -0.17 -1.63 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.40 4.75 8.45 -40.82 -0.34 4.41 16 34 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 35 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 36 H 0.09 1.59 7.73 -52.48 -0.41 1.19 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -32.41 378.13 -10.18 -42.59 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.31 Total: 0.42 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.53 Total: 0.83 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.41 Total: -55.74 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.51 Total: -1.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.41 -10.18 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000766573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.868 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds