Wall clock time and date at job start Tue Mar 31 2020 20:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31925 * 119.02083 * 2 1 4 4 C 1.32137 * 121.05981 * 179.97438 * 3 2 1 5 5 C 1.38991 * 119.12036 * 359.97438 * 4 3 2 6 6 Cl 1.73604 * 120.88250 * 180.02562 * 5 4 3 7 7 C 1.39628 * 118.23083 * 0.02562 * 5 4 3 8 8 C 1.48365 * 120.56466 * 180.02562 * 7 5 4 9 9 O 1.21485 * 120.00099 * 327.44084 * 8 7 5 10 10 N 1.34785 * 119.99953 * 147.43468 * 8 7 5 11 11 C 1.46923 * 120.62744 * 359.58617 * 10 8 7 12 12 C 1.52764 * 109.00526 * 233.58011 * 11 10 8 13 13 C 1.53035 * 109.38451 * 305.58954 * 12 11 10 14 14 C 1.53041 * 109.53824 * 61.23938 * 13 12 11 15 15 H 1.09005 * 109.52368 * 58.60423 * 14 13 12 16 16 N 1.46502 * 109.50035 * 178.68136 * 14 13 12 17 17 C 1.46503 * 120.00010 * 59.83693 * 16 14 13 18 18 C 1.36937 * 120.00117 * 239.84331 * 16 14 13 19 19 H 1.07998 * 120.00024 * 345.11565 * 18 16 14 20 20 C 1.38815 * 119.99615 * 165.11866 * 18 16 14 21 21 N 1.31617 * 119.99641 * 145.72530 * 20 18 16 22 22 Si 1.86800 * 120.00256 * 325.71624 * 20 18 16 23 23 H 1.48505 * 109.46381 * 96.05281 * 22 20 18 24 24 H 1.48493 * 109.47158 * 216.04870 * 22 20 18 25 25 H 1.48496 * 109.47327 * 336.05660 * 22 20 18 26 26 C 1.46924 * 120.63090 * 179.86464 * 10 8 7 27 27 N 1.31521 * 119.01840 * 179.73092 * 2 1 3 28 28 H 1.09007 * 109.47072 * 89.99961 * 1 2 3 29 29 H 1.09001 * 109.47155 * 330.00107 * 1 2 3 30 30 H 1.08993 * 109.47611 * 209.99431 * 1 2 3 31 31 H 1.07995 * 120.44172 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.58809 * 353.41588 * 11 10 8 33 33 H 1.08996 * 109.58656 * 113.84505 * 11 10 8 34 34 H 1.09001 * 109.56315 * 185.55713 * 12 11 10 35 35 H 1.08996 * 109.38438 * 65.52204 * 12 11 10 36 36 H 1.08999 * 109.46452 * 301.21700 * 13 12 11 37 37 H 1.08999 * 109.46149 * 181.26088 * 13 12 11 38 38 H 1.08996 * 109.46883 * 90.00880 * 17 16 14 39 39 H 1.08993 * 109.47511 * 210.01712 * 17 16 14 40 40 H 1.09006 * 109.46936 * 330.01655 * 17 16 14 41 41 H 0.97009 * 120.00096 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.58807 * 246.16171 * 26 10 8 43 43 H 1.09003 * 109.58884 * 6.58308 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1536 0.0000 4 6 3.4675 1.2006 0.0005 5 6 4.1867 0.0112 0.0016 6 17 5.9227 0.0196 0.0030 7 6 3.4757 -1.1905 0.0015 8 6 4.1910 -2.4903 0.0032 9 8 5.2614 -2.5953 -0.5616 10 7 3.6534 -3.5546 0.6316 11 6 2.3641 -3.4407 1.3269 12 6 2.5290 -3.9308 2.7643 13 6 3.1158 -5.3441 2.7549 14 6 4.4937 -5.3219 2.0893 15 1 5.1488 -4.6393 2.6306 16 7 5.0681 -6.6694 2.1089 17 6 4.3696 -7.7732 1.4455 18 6 6.2579 -6.8973 2.7474 19 1 6.8896 -6.0665 3.0249 20 6 6.6519 -8.1963 3.0378 21 7 7.9269 -8.5209 3.0012 22 14 5.3728 -9.4835 3.4807 23 1 5.0157 -10.2639 2.2687 24 1 5.9264 -10.3970 4.5123 25 1 4.1594 -8.8130 4.0129 26 6 4.3483 -4.8491 0.6395 27 7 2.1450 -1.1501 0.0054 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3634 -0.8900 0.5137 31 1 3.9812 2.1506 0.0009 32 1 2.0424 -2.3993 1.3320 33 1 1.6193 -4.0529 0.8183 34 1 1.5580 -3.9433 3.2594 35 1 3.2018 -3.2610 3.2999 36 1 2.4544 -6.0083 2.1985 37 1 3.2131 -5.7038 3.7793 38 1 4.7027 -7.8439 0.4101 39 1 4.5909 -8.7066 1.9630 40 1 3.2953 -7.5902 1.4698 41 1 8.2024 -9.4285 3.2045 42 1 3.7687 -5.5784 0.0736 43 1 5.3355 -4.7366 0.1911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027601604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:48 Heat of formation + Delta-G solvation = 69.128943 kcal Electronic energy + Delta-G solvation = -27667.347387 eV Core-core repulsion = 23776.029989 eV Total energy + Delta-G solvation = -3891.317397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82527 -39.85309 -37.74369 -36.97094 -35.46871 -34.40716 -33.43053 -32.35891 -31.57113 -29.56826 -28.82837 -26.70232 -26.24384 -24.73574 -24.07530 -23.14611 -21.81074 -20.38345 -19.08606 -18.59554 -17.52163 -16.79366 -16.71624 -16.24927 -15.90891 -15.49861 -15.27028 -14.98640 -14.32789 -14.11243 -13.93007 -13.79080 -13.55875 -13.44464 -12.87678 -12.75867 -12.63841 -12.47083 -12.32596 -12.22215 -12.14858 -11.84171 -11.59912 -11.54985 -11.17583 -11.05611 -10.60564 -10.47963 -10.45665 -10.38005 -10.14461 -9.99863 -9.54639 -9.38960 -9.27302 -8.72492 -8.34169 -7.15896 -6.00809 -3.17766 0.01183 0.28141 1.62287 2.47650 2.70148 3.11865 3.31450 3.42461 3.49024 3.51875 3.53887 3.89769 4.19836 4.49043 4.52883 4.78687 4.83105 5.07281 5.09992 5.11510 5.21306 5.27585 5.33631 5.36955 5.50466 5.63660 5.73114 5.80381 5.88081 5.98878 6.04901 6.15725 6.18634 6.25677 6.32345 6.43366 6.51986 6.65796 6.79090 6.81295 7.33942 7.41947 7.86041 8.02546 8.27032 8.91504 9.72482 10.03096 11.14227 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.003283 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.028399 B = 8526.893784 C = 9596.706674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.312 3.688 3 N -0.495 5.495 4 C 0.169 3.831 5 C -0.113 4.113 6 Cl -0.002 7.002 7 C 0.158 3.842 8 C 0.561 3.439 9 O -0.504 6.504 10 N -0.580 5.580 11 C 0.097 3.903 12 C -0.134 4.134 13 C -0.139 4.139 14 C 0.172 3.828 15 H 0.075 0.925 16 N -0.601 5.601 17 C 0.111 3.889 18 C -0.271 4.271 19 H 0.088 0.912 20 C 0.028 3.972 21 N -0.885 5.885 22 Si 0.874 3.126 23 H -0.289 1.289 24 H -0.306 1.306 25 H -0.278 1.278 26 C 0.098 3.902 27 N -0.474 5.474 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.185 0.815 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.020 0.980 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.236 19.735 -5.405 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.209 5.209 4 C 0.001 3.999 5 C -0.146 4.146 6 Cl 0.027 6.973 7 C 0.009 3.991 8 C 0.344 3.656 9 O -0.378 6.378 10 N -0.312 5.312 11 C -0.025 4.025 12 C -0.173 4.173 13 C -0.179 4.179 14 C 0.063 3.937 15 H 0.093 0.907 16 N -0.323 5.323 17 C -0.033 4.033 18 C -0.398 4.398 19 H 0.106 0.894 20 C -0.172 4.172 21 N -0.527 5.527 22 Si 0.707 3.293 23 H -0.218 1.218 24 H -0.235 1.235 25 H -0.204 1.204 26 C -0.025 4.025 27 N -0.193 5.193 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.202 0.798 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.304 19.472 -5.674 26.023 hybrid contribution 0.312 -0.898 0.375 1.022 sum -15.993 18.575 -5.299 25.077 Atomic orbital electron populations 1.20646 0.84556 1.04782 1.04448 1.23499 0.98732 0.82968 0.90209 1.68314 1.08940 1.30299 1.13384 1.23414 0.89177 0.97394 0.89959 1.22874 0.89997 0.95953 1.05728 1.98460 1.04118 1.98651 1.96041 1.21775 0.89596 0.94368 0.93353 1.17642 0.84745 0.82272 0.80895 1.90881 1.20095 1.82790 1.43994 1.48013 1.21796 1.10224 1.51158 1.22171 0.84294 1.03799 0.92256 1.21889 1.01287 0.98090 0.96003 1.22175 0.98456 0.95144 1.02123 1.20591 0.92988 0.87740 0.92384 0.90704 1.44122 1.24141 1.02609 1.61428 1.21317 0.94544 0.91436 0.96050 1.18842 0.92852 0.93704 1.34402 0.89388 1.24913 0.95327 0.96576 1.00415 1.70066 1.15349 1.19272 1.47967 0.87023 0.83231 0.81853 0.77212 1.21837 1.23513 1.20407 1.22494 0.98430 0.81325 1.00246 1.68573 1.07335 1.30107 1.13238 0.89071 0.89127 0.89016 0.79779 0.87861 0.91057 0.91027 0.91910 0.92266 0.91358 0.96161 0.94279 0.94682 0.92779 0.91442 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 10.31 36.00 0.37 -0.10 16 2 C 0.31 2.91 7.64 -157.32 -1.20 1.71 16 3 N -0.49 -4.68 10.31 -10.70 -0.11 -4.79 16 4 C 0.17 1.52 11.14 -17.14 -0.19 1.32 16 5 C -0.11 -1.31 6.38 -38.78 -0.25 -1.55 16 6 Cl 0.00 -0.02 26.80 -51.86 -1.39 -1.41 16 7 C 0.16 2.06 6.18 -82.61 -0.51 1.55 16 8 C 0.56 8.91 7.36 -12.09 -0.09 8.82 16 9 O -0.50 -9.43 14.46 5.38 0.08 -9.36 16 10 N -0.58 -8.81 2.98 -173.96 -0.52 -9.33 16 11 C 0.10 1.19 5.93 -3.93 -0.02 1.16 16 12 C -0.13 -1.67 6.06 -26.83 -0.16 -1.83 16 13 C -0.14 -2.22 5.12 -26.69 -0.14 -2.36 16 14 C 0.17 3.31 2.75 -67.81 -0.19 3.12 16 15 H 0.07 1.55 7.82 -51.93 -0.41 1.14 16 16 N -0.60 -14.11 2.70 -173.35 -0.47 -14.57 16 17 C 0.11 2.42 8.74 59.85 0.52 2.94 16 18 C -0.27 -7.56 9.97 -15.06 -0.15 -7.71 16 19 H 0.09 2.62 7.95 -52.49 -0.42 2.20 16 20 C 0.03 0.80 5.24 -17.43 -0.09 0.71 16 21 N -0.89 -27.14 13.97 55.49 0.78 -26.37 16 22 Si 0.87 22.22 24.97 -169.99 -4.24 17.98 16 23 H -0.29 -7.15 6.72 56.52 0.38 -6.77 16 24 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.10 1.73 5.79 -3.72 -0.02 1.71 16 27 N -0.47 -5.33 7.03 -7.32 -0.05 -5.38 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.10 1.17 4.49 -51.93 -0.23 0.93 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.91 6.71 -51.93 -0.35 0.56 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.04 0.94 1.54 -51.93 -0.08 0.86 16 40 H 0.03 0.65 6.45 -51.93 -0.33 0.31 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.07 1.14 7.52 -51.93 -0.39 0.75 16 43 H 0.10 1.97 7.00 -51.93 -0.36 1.61 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -32.89 353.74 -8.25 -41.14 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.53 Total: -2.73 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.12 Total: 9.49 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.37 Total: -60.44 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.24 Total: 17.98 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.39 Total: -1.41 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.89 -8.25 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027601604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.272 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds