Wall clock time and date at job start Tue Mar 31 2020 20:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31933 * 119.01832 * 2 1 4 4 C 1.32133 * 121.05658 * 179.97438 * 3 2 1 5 5 C 1.38988 * 119.12693 * 359.97438 * 4 3 2 6 6 Cl 1.73598 * 120.88745 * 179.97438 * 5 4 3 7 7 C 1.39634 * 118.22640 * 0.02562 * 5 4 3 8 8 C 1.48368 * 120.56202 * 179.97438 * 7 5 4 9 9 O 1.21487 * 120.00126 * 7.40780 * 8 7 5 10 10 N 1.34776 * 119.99631 * 187.41574 * 8 7 5 11 11 C 1.46928 * 120.63616 * 9.42440 * 10 8 7 12 12 C 1.53194 * 108.77555 * 126.37002 * 11 10 8 13 13 C 1.53042 * 109.31260 * 54.63859 * 12 11 10 14 14 C 1.53039 * 109.53750 * 298.63479 * 13 12 11 15 15 H 1.09007 * 109.49500 * 301.38298 * 14 13 12 16 16 N 1.46494 * 109.49875 * 181.31920 * 14 13 12 17 17 C 1.46508 * 119.99925 * 299.99968 * 16 14 13 18 18 C 1.36941 * 120.00602 * 119.99619 * 16 14 13 19 19 H 1.08000 * 119.99287 * 20.05490 * 18 16 14 20 20 C 1.38805 * 120.00364 * 200.05331 * 18 16 14 21 21 N 1.31625 * 120.00116 * 16.90693 * 20 18 16 22 22 Si 1.86797 * 120.00046 * 196.91045 * 20 18 16 23 23 H 1.48502 * 109.47356 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47299 * 119.99537 * 22 20 18 25 25 H 1.48499 * 109.47193 * 239.99876 * 22 20 18 26 26 C 1.46927 * 120.62937 * 189.14843 * 10 8 7 27 27 N 1.31519 * 119.02090 * 179.73154 * 2 1 3 28 28 H 1.09005 * 109.46957 * 90.00379 * 1 2 3 29 29 H 1.08999 * 109.47428 * 330.00421 * 1 2 3 30 30 H 1.09005 * 109.47198 * 209.99819 * 1 2 3 31 31 H 1.08006 * 120.44019 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.58795 * 246.15854 * 11 10 8 33 33 H 1.09004 * 109.58264 * 6.44241 * 11 10 8 34 34 H 1.09001 * 109.49300 * 174.58786 * 12 11 10 35 35 H 1.08995 * 109.49550 * 294.68313 * 12 11 10 36 36 H 1.08998 * 109.45607 * 58.65430 * 13 12 11 37 37 H 1.09000 * 109.45955 * 178.61556 * 13 12 11 38 38 H 1.08997 * 109.47167 * 95.35640 * 17 16 14 39 39 H 1.08999 * 109.47066 * 215.36158 * 17 16 14 40 40 H 1.08999 * 109.46464 * 335.35922 * 17 16 14 41 41 H 0.96994 * 120.00219 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.58896 * 353.41355 * 26 10 8 43 43 H 1.08995 * 109.59162 * 113.83938 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1469 1.1537 0.0000 4 6 3.4674 1.2007 0.0005 5 6 4.1867 0.0114 0.0016 6 17 5.9226 0.0198 0.0016 7 6 3.4757 -1.1904 0.0015 8 6 4.1911 -2.4902 0.0021 9 8 5.3980 -2.5192 0.1382 10 7 3.5021 -3.6386 -0.1486 11 6 2.0804 -3.6157 -0.5186 12 6 1.8787 -4.4957 -1.7563 13 6 2.4334 -5.8947 -1.4784 14 6 3.9336 -5.8027 -1.1904 15 1 4.4409 -5.3525 -2.0438 16 7 4.4698 -7.1456 -0.9556 17 6 3.9480 -7.9606 0.1444 18 6 5.4586 -7.6392 -1.7642 19 1 6.0653 -6.9637 -2.3489 20 6 5.6810 -9.0077 -1.8322 21 7 4.7620 -9.8460 -1.4021 22 14 7.2847 -9.6595 -2.5341 23 1 8.1449 -8.5205 -2.9440 24 1 7.9870 -10.4626 -1.5011 25 1 6.9975 -10.5135 -3.7145 26 6 4.1599 -4.9376 0.0481 27 7 2.1450 -1.1501 0.0054 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 0.8900 0.5138 30 1 -0.3634 -0.8900 0.5138 31 1 3.9811 2.1508 0.0001 32 1 1.4818 -4.0025 0.3061 33 1 1.7773 -2.5927 -0.7417 34 1 0.8151 -4.5647 -1.9842 35 1 2.4052 -4.0573 -2.6040 36 1 1.9235 -6.3226 -0.6153 37 1 2.2690 -6.5300 -2.3488 38 1 3.1711 -8.6256 -0.2329 39 1 4.7565 -8.5528 0.5730 40 1 3.5282 -7.3097 0.9113 41 1 4.9175 -10.8022 -1.4493 42 1 5.2293 -4.7870 0.1964 43 1 3.7345 -5.4344 0.9200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027601605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:53 Heat of formation + Delta-G solvation = 62.574556 kcal Electronic energy + Delta-G solvation = -27600.617516 eV Core-core repulsion = 23709.015898 eV Total energy + Delta-G solvation = -3891.601617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81211 -39.73651 -37.57600 -36.88845 -35.26545 -34.34500 -33.39466 -32.22181 -31.28314 -28.84626 -28.79522 -26.58851 -25.99459 -24.58625 -23.90758 -23.00750 -21.61992 -20.36093 -18.93708 -18.51544 -17.36278 -16.71958 -16.63723 -16.14946 -15.86654 -15.23673 -15.00498 -14.74629 -14.27791 -13.87906 -13.79402 -13.65603 -13.34880 -13.26638 -12.85398 -12.69471 -12.60511 -12.37649 -12.11740 -12.01303 -11.72919 -11.59001 -11.36975 -11.03339 -10.85699 -10.83276 -10.62346 -10.44702 -10.28751 -10.13041 -10.04127 -9.85241 -9.73709 -9.53283 -9.03273 -8.60869 -8.32668 -6.77543 -5.71546 -3.14379 -0.00435 0.28049 1.66805 2.56544 2.79644 3.28543 3.39064 3.40308 3.48065 3.50086 3.51215 3.96787 4.21283 4.52126 4.52523 4.85112 5.12196 5.15920 5.22881 5.31682 5.35704 5.39078 5.49122 5.61918 5.70171 5.76913 5.85108 6.04048 6.09715 6.20641 6.23515 6.29808 6.42624 6.53153 6.66873 6.78582 6.95258 7.01634 7.37466 7.38189 7.52417 7.71924 7.83914 8.10628 8.39597 9.24104 9.87750 10.35056 11.33517 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.003180 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.762081 B = 8802.160423 C =10027.431626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.311 3.689 3 N -0.495 5.495 4 C 0.169 3.831 5 C -0.111 4.111 6 Cl 0.003 6.997 7 C 0.155 3.845 8 C 0.555 3.445 9 O -0.506 6.506 10 N -0.577 5.577 11 C 0.077 3.923 12 C -0.133 4.133 13 C -0.133 4.133 14 C 0.170 3.830 15 H 0.065 0.935 16 N -0.592 5.592 17 C 0.161 3.839 18 C -0.254 4.254 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.095 3.905 27 N -0.471 5.471 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.064 0.936 33 H 0.133 0.867 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.000 1.000 41 H 0.251 0.749 42 H 0.092 0.908 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.619 22.535 3.727 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.209 5.209 4 C 0.000 4.000 5 C -0.144 4.144 6 Cl 0.032 6.968 7 C 0.007 3.993 8 C 0.339 3.661 9 O -0.380 6.380 10 N -0.308 5.308 11 C -0.046 4.046 12 C -0.172 4.172 13 C -0.173 4.173 14 C 0.061 3.939 15 H 0.083 0.917 16 N -0.314 5.314 17 C 0.017 3.983 18 C -0.383 4.383 19 H 0.088 0.912 20 C -0.196 4.196 21 N -0.551 5.551 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C -0.028 4.028 27 N -0.189 5.189 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.202 0.798 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.761 22.239 3.830 24.587 hybrid contribution 1.790 -0.606 -0.394 1.930 sum -7.971 21.633 3.436 23.309 Atomic orbital electron populations 1.20669 0.84546 1.04868 1.04527 1.23615 0.98843 0.83141 0.89876 1.68316 1.08949 1.30311 1.13373 1.23434 0.89206 0.97414 0.89953 1.22876 0.90191 0.95864 1.05430 1.98455 1.03851 1.98590 1.95880 1.21871 0.89467 0.94574 0.93373 1.17656 0.86458 0.82504 0.79493 1.90887 1.12192 1.85738 1.49206 1.48054 1.11769 1.05498 1.65516 1.22866 0.80134 1.04528 0.97035 1.21967 1.00785 0.96855 0.97562 1.22140 0.98153 0.94994 1.01969 1.20469 0.92251 0.86745 0.94468 0.91708 1.43927 1.42953 1.11602 1.32896 1.20788 0.98155 0.92094 0.87300 1.19281 1.07407 0.90345 1.21267 0.91233 1.24913 0.98117 0.96145 1.00472 1.70110 1.31821 1.01607 1.51518 0.86219 0.83662 0.78730 0.78181 1.20284 1.21608 1.21839 1.22467 0.99059 0.80797 1.00482 1.68571 1.07433 1.28900 1.13987 0.88955 0.89126 0.88932 0.79833 0.91728 0.85020 0.91321 0.92266 0.92471 0.91583 0.95061 0.94008 0.98185 0.93862 0.89009 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.31 36.00 0.37 -0.12 16 2 C 0.31 2.92 7.64 -157.32 -1.20 1.72 16 3 N -0.49 -4.68 10.31 -10.70 -0.11 -4.79 16 4 C 0.17 1.50 11.14 -17.14 -0.19 1.31 16 5 C -0.11 -1.28 6.40 -38.78 -0.25 -1.53 16 6 Cl 0.00 0.04 26.28 -51.86 -1.36 -1.32 16 7 C 0.16 2.05 6.62 -82.61 -0.55 1.50 16 8 C 0.56 8.96 7.65 -12.09 -0.09 8.87 16 9 O -0.51 -9.43 13.64 5.38 0.07 -9.35 16 10 N -0.58 -9.19 2.98 -173.94 -0.52 -9.71 16 11 C 0.08 1.01 5.89 -3.71 -0.02 0.99 16 12 C -0.13 -1.84 6.08 -26.61 -0.16 -2.00 16 13 C -0.13 -2.36 5.15 -26.69 -0.14 -2.50 16 14 C 0.17 3.50 2.72 -68.04 -0.19 3.32 16 15 H 0.06 1.42 7.85 -51.93 -0.41 1.02 16 16 N -0.59 -14.76 2.82 -173.60 -0.49 -15.25 16 17 C 0.16 3.91 8.04 59.85 0.48 4.40 16 18 C -0.25 -7.04 9.61 -15.06 -0.14 -7.18 16 19 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 20 C 0.00 0.05 5.02 -17.43 -0.09 -0.04 16 21 N -0.91 -26.38 10.76 55.49 0.60 -25.78 16 22 Si 0.90 22.18 29.59 -169.99 -5.03 17.15 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.10 1.76 5.78 -3.93 -0.02 1.74 16 27 N -0.47 -5.32 6.21 -7.32 -0.05 -5.36 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.57 4.09 -78.81 -0.32 1.25 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.03 0.82 7.39 -51.93 -0.38 0.43 16 39 H 0.04 1.10 7.26 -51.93 -0.38 0.72 16 40 H 0.00 -0.01 6.36 -51.93 -0.33 -0.34 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.09 1.89 7.01 -51.93 -0.36 1.53 16 43 H 0.07 1.24 6.48 -51.93 -0.34 0.91 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -31.81 357.28 -9.54 -41.35 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.85 Total: -2.78 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.19 Total: 10.47 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.57 Total: -60.89 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.36 Total: -1.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.81 -9.54 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027601605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.927 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds