Wall clock time and date at job start Tue Mar 31 2020 20:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47482 * 2 1 4 4 N 1.35640 * 126.43693 * 264.97800 * 3 2 1 5 5 H 0.96997 * 124.93088 * 0.02562 * 4 3 2 6 6 N 1.28466 * 110.13317 * 179.97438 * 4 3 2 7 7 C 1.31831 * 110.13699 * 0.02562 * 6 4 3 8 8 C 1.47662 * 126.46017 * 180.02562 * 7 6 4 9 9 O 1.21573 * 119.99840 * 174.47835 * 8 7 6 10 10 N 1.34780 * 120.00247 * 354.47197 * 8 7 6 11 11 C 1.47157 * 120.70783 * 183.21886 * 10 8 7 12 12 C 1.55894 * 107.94719 * 132.41532 * 11 10 8 13 13 H 1.09001 * 112.45735 * 181.84877 * 12 11 10 14 14 C 1.54546 * 108.44176 * 307.12748 * 12 11 10 15 15 C 1.53739 * 104.95203 * 88.29179 * 14 12 11 16 16 C 1.54547 * 104.95166 * 359.97438 * 15 14 12 17 17 H 1.09004 * 112.18012 * 146.28808 * 16 15 14 18 18 C 1.47157 * 120.70878 * 3.20208 * 10 8 7 19 19 N 1.48307 * 106.17945 * 58.78254 * 12 11 10 20 20 C 1.36927 * 128.07979 * 106.44434 * 19 12 11 21 21 H 1.08005 * 119.99992 * 156.08159 * 20 19 12 22 22 C 1.38808 * 120.00019 * 336.08191 * 20 19 12 23 23 N 1.31618 * 120.00275 * 354.54916 * 22 20 19 24 24 Si 1.86802 * 120.00124 * 174.55478 * 22 20 19 25 25 H 1.48502 * 109.47102 * 269.99714 * 24 22 20 26 26 H 1.48494 * 109.47254 * 29.99895 * 24 22 20 27 27 H 1.48504 * 109.47159 * 149.99833 * 24 22 20 28 28 C 1.35472 * 126.43296 * 85.29448 * 3 2 1 29 29 Cl 1.73591 * 127.23694 * 359.97438 * 28 3 2 30 30 H 1.08993 * 109.47191 * 299.99962 * 1 2 3 31 31 H 1.09005 * 109.47146 * 59.99897 * 1 2 3 32 32 H 1.09000 * 109.47407 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47397 * 239.99778 * 2 1 3 34 34 H 1.09005 * 109.47146 * 120.00103 * 2 1 3 35 35 H 1.09000 * 109.75310 * 252.37239 * 11 10 8 36 36 H 1.09002 * 109.75686 * 13.05726 * 11 10 8 37 37 H 1.09002 * 110.36726 * 207.00636 * 14 12 11 38 38 H 1.08995 * 110.36528 * 329.21700 * 14 12 11 39 39 H 1.09005 * 110.41528 * 241.06836 * 15 14 12 40 40 H 1.08994 * 110.20515 * 118.81998 * 15 14 12 41 41 H 1.09000 * 109.75242 * 107.62418 * 18 10 8 42 42 H 1.09003 * 109.74758 * 346.89469 * 18 10 8 43 43 H 0.97002 * 120.00643 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3910 2.1484 -1.0870 5 1 2.3632 1.8295 -2.0027 6 7 2.7718 3.3216 -0.7278 7 6 2.6928 3.4430 0.5825 8 6 3.0408 4.6390 1.3755 9 8 2.8282 4.6577 2.5724 10 7 3.5941 5.7099 0.7725 11 6 4.0116 6.8822 1.5579 12 6 5.4509 7.2753 1.1060 13 1 5.8470 8.1216 1.6674 14 6 6.3521 6.0234 1.2006 15 6 6.2055 5.3254 -0.1614 16 6 5.2278 6.2150 -0.9622 17 1 5.4586 6.2246 -2.0275 18 6 3.7939 5.7316 -0.6853 19 7 5.3650 7.5579 -0.3473 20 6 5.4080 8.7740 -0.9752 21 1 5.7183 8.8380 -2.0077 22 6 5.0529 9.9246 -0.2847 23 7 4.5730 9.8368 0.9378 24 14 5.2559 11.5976 -1.0903 25 1 6.6080 12.1320 -0.7877 26 1 5.0949 11.4620 -2.5603 27 1 4.2262 12.5290 -0.5634 28 6 2.2163 2.2091 1.0863 29 17 1.9241 1.7947 2.7465 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3246 7.7093 1.3788 36 1 4.0178 6.6318 2.6188 37 1 7.3896 6.3143 1.3648 38 1 6.0105 5.3699 2.0033 39 1 5.7903 4.3257 -0.0336 40 1 7.1712 5.2746 -0.6642 41 1 3.0796 6.4148 -1.1449 42 1 3.6585 4.7289 -1.0906 43 1 4.3245 10.6408 1.4203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029341564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:03 Heat of formation + Delta-G solvation = 79.002603 kcal Electronic energy + Delta-G solvation = -28320.554536 eV Core-core repulsion = 24429.665292 eV Total energy + Delta-G solvation = -3890.889243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.85367 -39.65379 -37.56424 -36.45735 -34.63275 -33.61524 -32.35888 -31.79353 -30.36943 -29.48560 -29.14342 -26.36053 -24.33320 -24.21224 -23.64457 -22.62573 -21.23358 -19.64985 -19.50336 -18.66982 -17.87548 -16.88213 -16.09959 -15.95234 -15.19460 -15.05144 -14.84675 -14.67140 -14.42123 -13.98615 -13.69790 -13.44264 -13.04826 -12.87602 -12.72506 -12.69516 -12.17803 -12.02866 -11.91173 -11.62563 -11.58223 -11.45783 -11.17093 -10.90673 -10.78002 -10.74217 -10.33259 -10.28017 -9.92956 -9.80427 -9.67750 -9.48581 -9.41130 -9.20965 -8.83734 -8.63980 -7.92644 -6.65944 -5.82156 -3.20560 1.51778 1.82864 2.02980 2.84637 3.37450 3.43345 3.44997 3.62013 3.76469 4.25173 4.43791 4.45987 4.61199 4.86934 5.05110 5.15187 5.22775 5.31511 5.38185 5.47962 5.65131 5.73575 5.77860 5.82515 5.85220 5.85818 6.03868 6.21825 6.38335 6.46184 6.53268 6.62010 6.71541 6.75896 6.87956 6.89083 6.96977 7.16389 7.38934 7.56647 7.71075 7.75251 8.19304 8.21335 8.76765 9.09736 9.71197 10.53495 11.32065 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.003352 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.552090 B = 8351.716846 C = 8701.877270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C 0.030 3.970 4 N -0.383 5.383 5 H 0.448 0.552 6 N -0.240 5.240 7 C 0.024 3.976 8 C 0.581 3.419 9 O -0.537 6.537 10 N -0.572 5.572 11 C 0.112 3.888 12 C 0.173 3.827 13 H 0.107 0.893 14 C -0.136 4.136 15 C -0.120 4.120 16 C 0.134 3.866 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.585 5.585 20 C -0.230 4.230 21 H 0.072 0.928 22 C 0.003 3.997 23 N -0.908 5.908 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.291 1.291 28 C -0.102 4.102 29 Cl -0.010 7.010 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.114 0.886 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -20.547 -3.762 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.098 4.098 4 N -0.097 5.097 5 H 0.293 0.707 6 N -0.074 5.074 7 C -0.138 4.138 8 C 0.365 3.635 9 O -0.414 6.414 10 N -0.302 5.302 11 C -0.011 4.011 12 C 0.066 3.934 13 H 0.125 0.875 14 C -0.175 4.175 15 C -0.160 4.160 16 C 0.026 3.974 17 H 0.092 0.908 18 C -0.055 4.055 19 N -0.306 5.306 20 C -0.358 4.358 21 H 0.090 0.910 22 C -0.196 4.196 23 N -0.553 5.553 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.206 1.206 27 H -0.217 1.217 28 C -0.140 4.140 29 Cl 0.018 6.982 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.048 -19.637 -3.881 20.643 hybrid contribution -0.220 0.368 -0.188 0.468 sum -5.268 -19.269 -4.069 20.386 Atomic orbital electron populations 1.21768 0.93686 1.02396 1.02886 1.20157 0.96756 0.88137 1.04281 1.21134 1.05367 0.96716 0.86551 1.43502 1.47661 1.09044 1.09480 0.70708 1.73696 1.18177 1.01573 1.13977 1.22215 1.05947 0.96220 0.89399 1.16936 0.79206 0.81164 0.86179 1.90781 1.55341 1.81578 1.13674 1.48073 1.57430 1.15811 1.08930 1.22911 0.99242 0.85297 0.93656 1.22099 0.90457 0.93821 0.87059 0.87535 1.22504 0.99946 0.98715 0.96314 1.22336 0.98896 0.97772 0.96957 1.21965 0.91719 0.87303 0.96425 0.90794 1.23266 0.99278 1.03374 0.79576 1.45133 1.84067 0.99960 1.01463 1.18924 1.38188 0.82257 0.96476 0.91046 1.25006 0.99182 0.98220 0.97152 1.69850 1.46585 1.27629 1.11204 0.86163 0.77286 0.83892 0.78589 1.21579 1.20640 1.21689 1.20455 1.11147 0.94526 0.87863 1.98347 1.94590 1.92702 1.12533 0.91691 0.92557 0.91552 0.90209 0.88832 0.89323 0.91552 0.92867 0.92835 0.93145 0.92894 0.92100 0.86887 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.05 -0.35 6.35 -27.89 -0.18 -0.53 16 3 C 0.03 0.30 6.51 -81.90 -0.53 -0.23 16 4 N -0.38 -3.75 6.86 33.62 0.23 -3.52 16 5 H 0.45 2.49 8.96 -190.44 -1.71 0.78 16 6 N -0.24 -3.37 8.56 33.42 0.29 -3.09 16 7 C 0.02 0.41 6.89 -82.76 -0.57 -0.16 16 8 C 0.58 11.74 7.71 -12.41 -0.10 11.65 16 9 O -0.54 -12.02 15.38 5.30 0.08 -11.93 16 10 N -0.57 -11.86 2.29 -171.48 -0.39 -12.25 16 11 C 0.11 2.57 5.83 -2.14 -0.01 2.56 16 12 C 0.17 4.04 3.18 -64.58 -0.21 3.83 16 13 H 0.11 2.77 6.85 -51.93 -0.36 2.42 16 14 C -0.14 -2.72 6.19 -25.54 -0.16 -2.88 16 15 C -0.12 -2.23 6.18 -25.53 -0.16 -2.39 16 16 C 0.13 2.72 4.27 -65.67 -0.28 2.44 16 17 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 18 C 0.07 1.37 5.72 -3.25 -0.02 1.35 16 19 N -0.58 -14.20 2.75 -151.42 -0.42 -14.62 16 20 C -0.23 -6.10 10.34 -15.07 -0.16 -6.26 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C 0.00 0.07 5.43 -17.43 -0.09 -0.02 16 23 N -0.91 -25.23 10.17 55.49 0.56 -24.66 16 24 Si 0.91 21.40 29.56 -169.99 -5.02 16.37 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 28 C -0.10 -1.46 6.79 -39.31 -0.27 -1.72 16 29 Cl -0.01 -0.15 28.04 -51.86 -1.45 -1.60 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 2.32 7.28 -51.93 -0.38 1.94 16 36 H 0.07 1.53 7.14 -51.93 -0.37 1.16 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.06 7.88 -51.93 -0.41 0.65 16 39 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.11 1.92 3.96 -97.40 -0.39 1.53 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -31.49 355.56 -10.49 -41.98 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.37 Total: 0.87 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -2.36 Total: 7.08 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.27 Total: -58.14 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.45 Total: -1.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.49 -10.49 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029341564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.985 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds