Wall clock time and date at job start Tue Mar 31 2020 22:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47169 * 2 1 4 4 N 1.39928 * 125.75279 * 270.18565 * 3 2 1 5 5 C 1.30409 * 108.95823 * 180.27075 * 4 3 2 6 6 C 1.50696 * 125.97485 * 179.77843 * 5 4 3 7 7 C 1.41340 * 108.04860 * 359.74597 * 5 4 3 8 8 C 1.47299 * 126.43462 * 180.02562 * 7 5 4 9 9 O 1.21623 * 120.00054 * 269.97438 * 8 7 5 10 10 N 1.34774 * 120.00220 * 89.97202 * 8 7 5 11 11 C 1.47871 * 126.94349 * 0.02562 * 10 8 7 12 12 C 1.56019 * 105.10485 * 181.98023 * 11 10 8 13 13 H 1.09000 * 116.25237 * 158.83462 * 12 11 10 14 14 C 1.57089 * 99.60444 * 32.80598 * 12 11 10 15 15 C 1.49288 * 126.94320 * 179.71090 * 10 8 7 16 16 H 1.08993 * 116.15679 * 15.86033 * 15 10 8 17 17 C 1.58434 * 103.69903 * 246.54436 * 15 10 8 18 18 N 1.47875 * 104.83317 * 288.54615 * 17 15 10 19 19 C 1.36933 * 126.94580 * 182.30648 * 18 17 15 20 20 H 1.07998 * 120.00134 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99797 * 359.97438 * 19 18 17 22 22 N 1.31617 * 120.00171 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99690 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46767 * 90.00390 * 23 21 19 25 25 H 1.48504 * 109.47096 * 210.00204 * 23 21 19 26 26 H 1.48497 * 109.47444 * 330.00267 * 23 21 19 27 27 C 1.34347 * 125.74294 * 89.99842 * 3 2 1 28 28 Cl 1.73599 * 126.32508 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.46763 * 299.99425 * 1 2 3 30 30 H 1.09001 * 109.47260 * 59.99648 * 1 2 3 31 31 H 1.09002 * 109.46745 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47202 * 240.00413 * 2 1 3 33 33 H 1.09001 * 109.47260 * 120.00352 * 2 1 3 34 34 H 1.09005 * 109.47078 * 269.96279 * 6 5 4 35 35 H 1.09002 * 109.47527 * 29.95574 * 6 5 4 36 36 H 1.08999 * 109.47299 * 149.96242 * 6 5 4 37 37 H 1.08995 * 110.31516 * 300.88505 * 11 10 8 38 38 H 1.08996 * 110.31520 * 63.07389 * 11 10 8 39 39 H 1.09000 * 112.36972 * 64.27680 * 14 12 11 40 40 H 1.09005 * 112.36546 * 191.72026 * 14 12 11 41 41 H 1.09000 * 110.19161 * 169.85740 * 17 15 10 42 42 H 1.08997 * 110.78660 * 47.54176 * 17 15 10 43 43 H 0.97001 * 119.99760 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2875 2.1533 -1.1356 5 6 2.7103 3.3280 -0.7588 6 6 3.1138 4.4579 -1.6706 7 6 2.7231 3.3563 0.6543 8 6 3.1311 4.4890 1.5029 9 8 4.2909 4.6007 1.8518 10 7 2.2193 5.4017 1.8928 11 6 0.7783 5.4160 1.5614 12 6 0.2211 6.7128 2.2263 13 1 -0.7138 7.0993 1.8205 14 6 1.4816 7.6402 2.0888 15 6 2.4589 6.5990 2.7517 16 1 3.4988 6.9003 2.8769 17 6 1.6480 6.2799 4.0749 18 7 0.2264 6.4036 3.6868 19 6 -0.8646 6.2631 4.5023 20 1 -1.8594 6.3775 4.0978 21 6 -0.6919 5.9727 5.8487 22 7 0.5205 5.8328 6.3416 23 14 -2.1803 5.7803 6.9610 24 1 -2.6145 4.3601 6.9655 25 1 -1.8229 6.1930 8.3420 26 1 -3.2866 6.6346 6.4598 27 6 2.2800 2.1212 1.0904 28 17 2.1023 1.6170 2.7421 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.1785 4.3834 -1.8922 35 1 2.5446 4.3974 -2.5982 36 1 2.9105 5.4103 -1.1809 37 1 0.6387 5.4547 0.4811 38 1 0.2859 4.5366 1.9762 39 1 1.7336 7.8462 1.0485 40 1 1.3902 8.5540 2.6760 41 1 1.8930 7.0053 4.8506 42 1 1.8585 5.2687 4.4232 43 1 0.6411 5.6302 7.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032790506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:18 Heat of formation + Delta-G solvation = 95.992112 kcal Electronic energy + Delta-G solvation = -28243.543372 eV Core-core repulsion = 24353.390849 eV Total energy + Delta-G solvation = -3890.152523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49070 -39.73870 -37.54663 -36.91575 -35.02501 -33.56826 -31.58543 -31.49109 -30.04162 -28.75243 -28.46404 -27.78909 -25.19499 -24.35177 -23.23386 -21.98670 -20.61479 -20.08483 -19.70600 -18.53971 -17.60976 -16.79207 -16.28825 -15.71203 -15.48408 -15.18198 -14.87060 -14.40930 -14.19786 -13.87221 -13.57790 -13.30086 -13.27261 -12.75280 -12.69838 -12.48288 -12.40484 -12.15710 -11.93645 -11.79947 -11.63730 -11.60880 -11.49838 -11.30230 -10.99511 -10.84917 -10.76287 -10.72320 -10.55006 -10.22149 -10.07220 -9.62389 -9.53843 -9.30091 -8.69963 -8.58971 -7.93434 -6.90782 -5.75636 -3.09641 1.35034 1.44156 2.32796 2.41798 2.96638 3.36633 3.41666 3.44120 3.54690 4.18925 4.42539 4.61592 4.66675 4.87565 4.91451 4.96000 5.20680 5.22795 5.31721 5.33966 5.40989 5.47604 5.53054 5.58665 5.65120 5.70934 5.74232 5.77678 5.80815 6.00051 6.21712 6.29719 6.34028 6.44666 6.51906 6.56638 6.61611 6.75103 7.41015 7.44283 7.52693 7.74222 8.10454 8.14078 8.64170 9.11685 9.72399 10.42244 11.36379 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.004569 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.314352 B = 6126.395278 C = 7276.711434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.353 5.353 4 N -0.278 5.278 5 C 0.116 3.884 6 C -0.074 4.074 7 C -0.243 4.243 8 C 0.609 3.391 9 O -0.545 6.545 10 N -0.594 5.594 11 C 0.090 3.910 12 C 0.141 3.859 13 H 0.104 0.896 14 C -0.150 4.150 15 C 0.095 3.905 16 H 0.115 0.885 17 C 0.177 3.823 18 N -0.596 5.596 19 C -0.229 4.229 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.158 3.842 28 Cl 0.020 6.980 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -7.318 -15.061 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.136 5.136 4 N -0.101 5.101 5 C -0.050 4.050 6 C -0.133 4.133 7 C -0.259 4.259 8 C 0.395 3.605 9 O -0.423 6.423 10 N -0.326 5.326 11 C -0.036 4.036 12 C 0.032 3.968 13 H 0.122 0.878 14 C -0.189 4.189 15 C -0.007 4.007 16 H 0.133 0.867 17 C 0.052 3.948 18 N -0.321 5.321 19 C -0.357 4.357 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.002 3.998 28 Cl 0.048 6.952 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.923 -8.333 -15.435 17.646 hybrid contribution -0.721 -0.105 1.644 1.798 sum 1.202 -8.438 -13.791 16.212 Atomic orbital electron populations 1.22198 0.93519 1.03447 1.03784 1.21857 0.95922 0.77050 1.04959 1.48509 1.50708 1.12421 1.01964 1.77167 1.23451 1.04019 1.05459 1.22227 0.96809 0.94271 0.91693 1.20259 1.02297 0.93327 0.97388 1.19818 1.17114 0.94981 0.93982 1.16645 0.84308 0.80483 0.79046 1.90758 1.18225 1.75915 1.57437 1.49122 1.09031 1.25033 1.49460 1.23236 0.80462 1.01978 0.97894 1.23150 0.95762 0.91066 0.86789 0.87811 1.24177 0.97320 0.97911 0.99538 1.24926 0.99248 0.83685 0.92867 0.86680 1.22367 0.81928 1.00626 0.89855 1.45194 1.02344 1.82294 1.02223 1.19023 0.85372 1.41848 0.89417 0.90248 1.24792 0.96616 1.01894 0.96894 1.69907 1.19077 1.54319 1.13238 0.86152 0.81735 0.77734 0.80305 1.21731 1.21684 1.20641 1.22002 1.01734 0.92046 0.84045 1.98473 1.95847 1.90846 1.10037 0.91508 0.91297 0.90105 0.87947 0.88607 0.89813 0.90215 0.90055 0.93078 0.91448 0.91491 0.89781 0.92690 0.93295 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.12 1.15 6.97 -4.04 -0.03 1.12 16 3 N -0.35 -4.82 3.58 -57.57 -0.21 -5.03 16 4 N -0.28 -4.01 12.49 33.90 0.42 -3.58 16 5 C 0.12 1.72 7.26 -82.02 -0.60 1.12 16 6 C -0.07 -0.83 10.28 36.00 0.37 -0.46 16 7 C -0.24 -4.17 5.16 -105.02 -0.54 -4.71 16 8 C 0.61 11.88 7.27 -12.58 -0.09 11.79 16 9 O -0.55 -12.23 17.45 5.26 0.09 -12.14 16 10 N -0.59 -11.22 2.95 -156.36 -0.46 -11.68 16 11 C 0.09 1.59 5.97 -1.67 -0.01 1.58 16 12 C 0.14 2.61 5.47 -62.55 -0.34 2.27 16 13 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 14 C -0.15 -2.48 6.86 -22.09 -0.15 -2.64 16 15 C 0.10 1.83 5.35 -60.96 -0.33 1.51 16 16 H 0.12 2.15 8.05 -51.93 -0.42 1.73 16 17 C 0.18 4.23 4.89 -0.29 0.00 4.23 16 18 N -0.60 -14.19 3.02 -154.75 -0.47 -14.66 16 19 C -0.23 -6.02 10.37 -15.06 -0.16 -6.17 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 22 N -0.92 -26.55 10.56 55.49 0.59 -25.97 16 23 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.16 2.53 7.54 -16.44 -0.12 2.40 16 28 Cl 0.02 0.32 28.56 -51.86 -1.48 -1.16 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.79 7.77 -51.93 -0.40 0.39 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 1.44 7.46 -51.93 -0.39 1.05 16 42 H 0.05 1.35 7.67 -51.93 -0.40 0.95 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -32.83 373.25 -8.85 -41.68 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.22 Total: -0.40 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -1.71 Total: 10.73 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.13 Total: -60.91 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.48 Total: -1.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.83 -8.85 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032790506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.671 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds