Wall clock time and date at job start Tue Mar 31 2020 22:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47169 * 2 1 4 4 N 1.39928 * 125.75279 * 270.18565 * 3 2 1 5 5 C 1.30409 * 108.95823 * 180.27075 * 4 3 2 6 6 C 1.50696 * 125.97485 * 179.77843 * 5 4 3 7 7 C 1.41340 * 108.04860 * 359.74597 * 5 4 3 8 8 C 1.47299 * 126.43462 * 180.02562 * 7 5 4 9 9 O 1.21623 * 120.00054 * 269.97438 * 8 7 5 10 10 N 1.34774 * 120.00220 * 89.97202 * 8 7 5 11 11 C 1.47871 * 126.94349 * 0.02562 * 10 8 7 12 12 C 1.56019 * 105.10485 * 181.98023 * 11 10 8 13 13 H 1.09000 * 116.25237 * 158.83462 * 12 11 10 14 14 C 1.57089 * 99.60444 * 32.80598 * 12 11 10 15 15 C 1.49288 * 126.94320 * 179.71090 * 10 8 7 16 16 H 1.08993 * 116.15679 * 15.86033 * 15 10 8 17 17 C 1.58434 * 103.69903 * 246.54436 * 15 10 8 18 18 N 1.47875 * 104.83317 * 288.54615 * 17 15 10 19 19 C 1.36933 * 126.94580 * 182.30648 * 18 17 15 20 20 H 1.07998 * 120.00134 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99797 * 359.97438 * 19 18 17 22 22 N 1.31617 * 120.00171 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99690 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46767 * 90.00390 * 23 21 19 25 25 H 1.48504 * 109.47096 * 210.00204 * 23 21 19 26 26 H 1.48497 * 109.47444 * 330.00267 * 23 21 19 27 27 C 1.34347 * 125.74294 * 89.99842 * 3 2 1 28 28 Cl 1.73599 * 126.32508 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.46763 * 299.99425 * 1 2 3 30 30 H 1.09001 * 109.47260 * 59.99648 * 1 2 3 31 31 H 1.09002 * 109.46745 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47202 * 240.00413 * 2 1 3 33 33 H 1.09001 * 109.47260 * 120.00352 * 2 1 3 34 34 H 1.09005 * 109.47078 * 269.96279 * 6 5 4 35 35 H 1.09002 * 109.47527 * 29.95574 * 6 5 4 36 36 H 1.08999 * 109.47299 * 149.96242 * 6 5 4 37 37 H 1.08995 * 110.31516 * 300.88505 * 11 10 8 38 38 H 1.08996 * 110.31520 * 63.07389 * 11 10 8 39 39 H 1.09000 * 112.36972 * 64.27680 * 14 12 11 40 40 H 1.09005 * 112.36546 * 191.72026 * 14 12 11 41 41 H 1.09000 * 110.19161 * 169.85740 * 17 15 10 42 42 H 1.08997 * 110.78660 * 47.54176 * 17 15 10 43 43 H 0.97001 * 119.99760 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2875 2.1533 -1.1356 5 6 2.7103 3.3280 -0.7588 6 6 3.1138 4.4579 -1.6706 7 6 2.7231 3.3563 0.6543 8 6 3.1311 4.4890 1.5029 9 8 4.2909 4.6007 1.8518 10 7 2.2193 5.4017 1.8928 11 6 0.7783 5.4160 1.5614 12 6 0.2211 6.7128 2.2263 13 1 -0.7138 7.0993 1.8205 14 6 1.4816 7.6402 2.0888 15 6 2.4589 6.5990 2.7517 16 1 3.4988 6.9003 2.8769 17 6 1.6480 6.2799 4.0749 18 7 0.2264 6.4036 3.6868 19 6 -0.8646 6.2631 4.5023 20 1 -1.8594 6.3775 4.0978 21 6 -0.6919 5.9727 5.8487 22 7 0.5205 5.8328 6.3416 23 14 -2.1803 5.7803 6.9610 24 1 -2.6145 4.3601 6.9655 25 1 -1.8229 6.1930 8.3420 26 1 -3.2866 6.6346 6.4598 27 6 2.2800 2.1212 1.0904 28 17 2.1023 1.6170 2.7421 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.1785 4.3834 -1.8922 35 1 2.5446 4.3974 -2.5982 36 1 2.9105 5.4103 -1.1809 37 1 0.6387 5.4547 0.4811 38 1 0.2859 4.5366 1.9762 39 1 1.7336 7.8462 1.0485 40 1 1.3902 8.5540 2.6760 41 1 1.8930 7.0053 4.8506 42 1 1.8585 5.2687 4.4232 43 1 0.6411 5.6302 7.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032790506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:17 Heat of formation + Delta-G solvation = 75.873401 kcal Electronic energy + Delta-G solvation = -28244.415785 eV Core-core repulsion = 24353.390849 eV Total energy + Delta-G solvation = -3891.024936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65119 -41.28756 -39.13835 -38.17136 -35.97375 -35.42003 -33.31764 -32.39458 -31.44116 -30.30470 -30.14353 -28.71819 -26.96483 -25.73846 -24.59541 -23.21654 -21.94889 -21.44096 -21.18216 -20.06652 -19.08840 -18.24471 -17.79835 -17.29562 -16.64257 -16.57129 -16.35933 -15.83629 -15.48934 -15.29651 -14.94297 -14.64781 -14.31463 -14.07108 -13.83723 -13.68104 -13.53753 -13.41778 -13.29219 -13.18274 -13.11111 -12.89463 -12.82413 -12.71711 -12.69325 -12.31296 -12.29917 -12.10796 -12.03966 -11.88703 -11.85331 -11.50115 -11.09623 -10.71705 -10.37523 -9.80785 -9.53613 -8.87890 -7.81847 -5.16873 0.14676 0.24893 1.16359 1.38661 1.46757 1.47238 1.47872 1.56413 2.09886 2.49556 3.17230 3.35658 3.43723 3.66854 3.69900 3.86054 3.91240 3.94389 3.98273 4.02866 4.21743 4.22289 4.23971 4.57943 4.63277 4.67120 4.70327 4.72959 4.77992 4.88147 4.93979 4.97730 5.06902 5.12422 5.15825 5.27339 5.31494 5.47411 5.51833 5.58222 5.69569 6.12830 6.29304 6.61636 7.06019 7.11408 7.73799 8.44799 9.29144 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.004569 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.314352 B = 6126.395278 C = 7276.711434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.344 5.344 4 N -0.278 5.278 5 C 0.118 3.882 6 C -0.074 4.074 7 C -0.271 4.271 8 C 0.612 3.388 9 O -0.582 6.582 10 N -0.594 5.594 11 C 0.100 3.900 12 C 0.136 3.864 13 H 0.133 0.867 14 C -0.124 4.124 15 C 0.099 3.901 16 H 0.120 0.880 17 C 0.189 3.811 18 N -0.615 5.615 19 C -0.226 4.226 20 H 0.093 0.907 21 C -0.068 4.068 22 N -0.955 5.955 23 Si 0.972 3.028 24 H -0.293 1.293 25 H -0.301 1.301 26 H -0.262 1.262 27 C 0.151 3.849 28 Cl 0.009 6.991 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.020 0.980 42 H -0.002 1.002 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -7.225 -18.278 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.126 5.126 4 N -0.102 5.102 5 C -0.048 4.048 6 C -0.132 4.132 7 C -0.288 4.288 8 C 0.399 3.601 9 O -0.463 6.463 10 N -0.325 5.325 11 C -0.025 4.025 12 C 0.030 3.970 13 H 0.151 0.849 14 C -0.163 4.163 15 C -0.004 4.004 16 H 0.137 0.863 17 C 0.063 3.937 18 N -0.339 5.339 19 C -0.355 4.355 20 H 0.111 0.889 21 C -0.261 4.261 22 N -0.605 5.605 23 Si 0.801 3.199 24 H -0.220 1.220 25 H -0.228 1.228 26 H -0.187 1.187 27 C -0.007 4.007 28 Cl 0.037 6.963 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.038 0.962 42 H 0.016 0.984 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.510 -8.244 -18.724 20.465 hybrid contribution -0.302 -0.215 2.587 2.613 sum 0.208 -8.459 -16.137 18.221 Atomic orbital electron populations 1.22164 0.92608 1.05012 1.02456 1.22312 0.96650 0.75193 1.06679 1.48901 1.49399 1.13343 1.00984 1.77157 1.23474 1.03981 1.05552 1.22699 0.96117 0.95121 0.90897 1.20412 1.03224 0.91936 0.97637 1.19766 1.19287 0.94672 0.95034 1.16959 0.83749 0.80660 0.78688 1.90727 1.19843 1.76758 1.58981 1.49166 1.09582 1.24842 1.48929 1.23101 0.79298 1.00256 0.99801 1.23556 0.98011 0.91885 0.83566 0.84907 1.24091 0.94317 0.96425 1.01514 1.24807 0.99548 0.85235 0.90785 0.86252 1.21965 0.83448 0.96658 0.91623 1.45432 1.01562 1.82207 1.04698 1.19488 0.86710 1.39518 0.89765 0.88885 1.25587 0.98854 1.03007 0.98649 1.70147 1.21155 1.56509 1.12655 0.85167 0.79285 0.77502 0.77944 1.22016 1.22812 1.18657 1.22028 1.02079 0.92415 0.84169 1.98468 1.95913 1.90914 1.11016 0.93510 0.91797 0.87126 0.85561 0.87595 0.88908 0.87817 0.89928 0.89212 0.94224 0.87380 0.89699 0.96230 0.98420 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 71.98 0.74 -1.73 16 2 C 0.11 1.85 6.97 86.38 0.60 2.45 16 3 N -0.34 -8.87 3.58 -336.04 -1.20 -10.08 16 4 N -0.28 -7.40 12.49 -46.67 -0.58 -7.99 16 5 C 0.12 3.23 7.26 43.53 0.32 3.55 16 6 C -0.07 -1.43 10.28 71.23 0.73 -0.70 16 7 C -0.27 -9.11 5.16 -20.12 -0.10 -9.22 16 8 C 0.61 23.81 7.27 86.63 0.63 24.44 16 9 O -0.58 -26.55 17.45 -4.10 -0.07 -26.62 16 10 N -0.59 -22.05 2.95 -766.85 -2.26 -24.31 16 11 C 0.10 3.36 5.97 87.16 0.52 3.88 16 12 C 0.14 4.71 5.47 46.93 0.26 4.97 16 13 H 0.13 3.86 8.14 -2.39 -0.02 3.84 16 14 C -0.12 -3.76 6.86 33.60 0.23 -3.53 16 15 C 0.10 3.80 5.35 47.96 0.26 4.06 16 16 H 0.12 4.48 8.05 -2.39 -0.02 4.46 16 17 C 0.19 9.41 4.89 88.06 0.43 9.85 16 18 N -0.61 -29.36 3.02 -643.51 -1.95 -31.30 16 19 C -0.23 -11.92 10.37 84.04 0.87 -11.05 16 20 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 21 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 22 N -0.96 -58.04 10.56 21.65 0.23 -57.81 16 23 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 27 C 0.15 4.78 7.54 84.32 0.64 5.41 16 28 Cl 0.01 0.29 28.56 -2.72 -0.08 0.21 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.58 7.77 -2.39 -0.02 1.56 16 34 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.59 8.01 -2.39 -0.02 1.57 16 37 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 39 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.02 1.09 7.46 -2.39 -0.02 1.08 16 42 H 0.00 -0.14 7.67 -2.39 -0.02 -0.16 16 43 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -75.26 373.25 3.72 -71.54 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.02 Total: 10.09 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 6.58 Total: 29.03 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -5.76 Total: -131.48 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.07 Total: -26.62 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -75.26 3.72 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032790506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.418 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds