Wall clock time and date at job start Tue Mar 31 2020 22:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47342 * 2 1 4 4 C 1.34777 * 120.00169 * 276.99989 * 3 2 1 5 5 O 1.21490 * 119.99884 * 184.22679 * 4 3 2 6 6 C 1.48362 * 119.99743 * 4.23017 * 4 3 2 7 7 N 1.33125 * 120.56926 * 4.78370 * 6 4 3 8 8 C 1.31518 * 120.76001 * 179.71833 * 7 6 4 9 9 C 1.50698 * 119.02207 * 180.31277 * 8 7 6 10 10 N 1.31936 * 121.95719 * 0.57177 * 8 7 6 11 11 C 1.32132 * 121.05636 * 359.71333 * 10 8 7 12 12 C 1.38989 * 119.12588 * 0.02562 * 11 10 8 13 13 Cl 1.73599 * 120.88406 * 180.02562 * 12 11 10 14 14 C 1.46499 * 119.99940 * 96.99715 * 3 2 1 15 15 H 1.09007 * 110.77968 * 1.78922 * 14 3 2 16 16 C 1.55152 * 110.72136 * 125.02434 * 14 3 2 17 17 C 1.54917 * 101.58281 * 153.86793 * 16 14 3 18 18 N 1.47426 * 104.82829 * 322.99092 * 17 16 14 19 19 C 1.36940 * 125.64814 * 204.16157 * 18 17 16 20 20 H 1.08001 * 120.00058 * 143.85970 * 19 18 17 21 21 C 1.38812 * 120.00060 * 323.86258 * 19 18 17 22 22 N 1.31613 * 120.00519 * 167.91553 * 21 19 18 23 23 Si 1.86802 * 119.99852 * 347.91783 * 21 19 18 24 24 H 1.48497 * 109.47246 * 83.64344 * 23 21 19 25 25 H 1.48504 * 109.46974 * 203.64395 * 23 21 19 26 26 H 1.48503 * 109.47142 * 323.64363 * 23 21 19 27 27 C 1.47020 * 108.70327 * 24.13093 * 18 17 16 28 28 H 1.08999 * 109.46893 * 299.99321 * 1 2 3 29 29 H 1.08999 * 109.46894 * 59.99541 * 1 2 3 30 30 H 1.08996 * 109.46867 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46900 * 240.00180 * 2 1 3 32 32 H 1.08997 * 109.47407 * 120.00547 * 2 1 3 33 33 H 1.09000 * 109.46751 * 270.24827 * 9 8 7 34 34 H 1.08996 * 109.47614 * 30.25460 * 9 8 7 35 35 H 1.09009 * 109.47091 * 150.25382 * 9 8 7 36 36 H 1.08005 * 120.43236 * 180.02562 * 11 10 8 37 37 H 1.08999 * 111.00723 * 271.94234 * 16 14 3 38 38 H 1.08997 * 111.00179 * 35.79503 * 16 14 3 39 39 H 1.08999 * 110.36806 * 204.15437 * 17 16 14 40 40 H 1.08993 * 110.36853 * 81.82701 * 17 16 14 41 41 H 0.97000 * 120.00869 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.87980 * 239.51962 * 27 18 17 43 43 H 1.09000 * 109.88370 * 118.36063 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1090 2.0640 -1.1585 5 8 2.5856 3.1814 -1.1693 6 6 1.6266 1.4509 -2.4205 7 7 1.0166 0.2677 -2.4085 8 6 0.5826 -0.2767 -3.5243 9 6 -0.1088 -1.6144 -3.4645 10 7 0.7390 0.3112 -4.6950 11 6 1.3387 1.4844 -4.7939 12 6 1.8102 2.1025 -3.6418 13 17 2.6044 3.6442 -3.7188 14 6 2.4083 2.0202 1.2593 15 1 2.3054 1.3260 2.0934 16 6 3.8591 2.5634 1.1731 17 6 3.8233 3.7123 2.2117 18 7 2.4813 4.3062 2.0712 19 6 2.1358 5.5870 2.4113 20 1 1.4185 6.1296 1.8134 21 6 2.7075 6.1878 3.5243 22 7 2.5658 7.4817 3.7195 23 14 3.6780 5.1599 4.7454 24 1 5.0715 4.9977 4.2585 25 1 3.6909 5.8405 6.0653 26 1 3.0432 3.8245 4.8832 27 6 1.5756 3.2960 1.5050 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.6295 -2.4097 -3.5667 34 1 -0.6221 -1.7157 -2.5083 35 1 -0.8338 -1.6852 -4.2753 36 1 1.4609 1.9568 -5.7575 37 1 4.5804 1.7987 1.4611 38 1 4.0745 2.9454 0.1752 39 1 4.5911 4.4522 1.9856 40 1 3.9601 3.3179 3.2185 41 1 2.9657 7.9017 4.4971 42 1 1.1618 3.6557 0.5629 43 1 0.7707 3.0837 2.2087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033973379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:49 Heat of formation + Delta-G solvation = 76.926024 kcal Electronic energy + Delta-G solvation = -28178.691022 eV Core-core repulsion = 24287.711732 eV Total energy + Delta-G solvation = -3890.979291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78480 -39.94922 -37.22415 -36.79119 -35.81447 -34.14653 -33.34495 -32.30270 -30.56336 -29.23152 -28.75036 -27.92663 -25.98102 -24.28285 -23.64577 -23.03777 -21.32427 -20.52876 -19.57670 -18.28687 -17.43881 -16.85030 -16.53594 -16.04893 -15.84729 -15.44499 -15.12707 -14.74609 -14.54461 -14.14312 -13.73747 -13.50628 -13.36450 -13.29097 -12.86087 -12.77146 -12.59593 -12.29450 -12.10791 -11.99033 -11.75011 -11.68471 -11.57374 -11.38818 -11.18128 -10.92365 -10.89111 -10.80616 -10.57607 -10.28611 -9.99036 -9.80732 -9.50514 -9.44511 -9.07287 -8.56807 -8.41679 -6.68604 -5.88224 -3.33426 0.05617 0.35628 1.76484 2.61524 2.76261 3.36005 3.40460 3.41540 3.49550 3.54083 3.54720 3.95262 4.27874 4.55300 4.60228 4.87934 5.01291 5.11051 5.11905 5.17083 5.23991 5.37172 5.37377 5.47067 5.50941 5.51567 5.60832 5.69634 5.83296 5.94900 6.03535 6.14880 6.23289 6.33277 6.38651 6.43516 6.64632 6.74648 6.92424 7.05048 7.38867 7.49251 8.01846 8.15683 8.44213 8.94869 9.75897 10.33476 11.28334 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.003737 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.706713 B = 7491.098931 C = 8484.068610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.111 3.889 3 N -0.582 5.582 4 C 0.554 3.446 5 O -0.473 6.473 6 C 0.148 3.852 7 N -0.467 5.467 8 C 0.305 3.695 9 C -0.085 4.085 10 N -0.495 5.495 11 C 0.164 3.836 12 C -0.109 4.109 13 Cl 0.007 6.993 14 C 0.133 3.867 15 H 0.096 0.904 16 C -0.147 4.147 17 C 0.119 3.881 18 N -0.601 5.601 19 C -0.238 4.238 20 H 0.082 0.918 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.895 3.105 24 H -0.284 1.284 25 H -0.303 1.303 26 H -0.274 1.274 27 C 0.133 3.867 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.183 0.817 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.263 0.737 42 H 0.040 0.960 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -21.533 -16.306 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 N -0.315 5.315 4 C 0.337 3.663 5 O -0.344 6.344 6 C 0.000 4.000 7 N -0.185 5.185 8 C 0.039 3.961 9 C -0.144 4.144 10 N -0.210 5.210 11 C -0.004 4.004 12 C -0.142 4.142 13 Cl 0.037 6.963 14 C 0.030 3.970 15 H 0.114 0.886 16 C -0.186 4.186 17 C -0.007 4.007 18 N -0.328 5.328 19 C -0.366 4.366 20 H 0.100 0.900 21 C -0.170 4.170 22 N -0.556 5.556 23 Si 0.725 3.275 24 H -0.211 1.211 25 H -0.231 1.231 26 H -0.200 1.200 27 C 0.007 3.993 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.200 0.800 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.314 -21.416 -16.090 26.991 hybrid contribution 0.953 0.431 0.679 1.247 sum -2.361 -20.985 -15.410 26.142 Atomic orbital electron populations 1.22119 0.95718 1.01602 1.01889 1.21835 0.95061 0.81474 1.02787 1.47866 1.63352 1.14216 1.06058 1.17666 0.80782 0.85592 0.82232 1.90977 1.41521 1.17190 1.84695 1.21860 0.93513 0.90387 0.94264 1.69032 1.10018 1.09128 1.30365 1.23516 0.92201 0.97061 0.83325 1.20628 1.00233 0.88818 1.04685 1.68285 1.14603 1.09327 1.28752 1.23403 0.89464 0.89675 0.97899 1.22929 1.01871 0.93436 0.95950 1.98476 1.76520 1.23021 1.98316 1.22292 0.96081 0.95114 0.83537 0.88603 1.23219 0.94526 0.98222 1.02628 1.21904 0.90014 0.93927 0.94808 1.44442 1.03008 1.09717 1.75616 1.18551 1.25454 0.86070 1.06495 0.90049 1.25435 0.98951 0.95771 0.96841 1.69763 1.47194 1.09013 1.29663 0.86705 0.79983 0.80072 0.80695 1.21125 1.23091 1.19954 1.21602 0.92698 0.87616 0.97401 0.93045 0.92022 0.92090 0.88747 0.91133 0.89237 0.89102 0.89300 0.79970 0.92181 0.88691 0.92600 0.96210 0.92701 0.94195 0.95335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.46 37.16 0.35 -1.19 16 2 C 0.11 1.18 5.72 -4.04 -0.02 1.16 16 3 N -0.58 -8.43 2.56 -164.94 -0.42 -8.85 16 4 C 0.55 8.79 6.69 -12.09 -0.08 8.71 16 5 O -0.47 -9.10 10.54 5.37 0.06 -9.05 16 6 C 0.15 1.95 6.46 -82.62 -0.53 1.41 16 7 N -0.47 -5.03 3.98 -7.32 -0.03 -5.06 16 8 C 0.31 2.83 7.64 -157.31 -1.20 1.63 16 9 C -0.09 -0.46 10.31 36.00 0.37 -0.09 16 10 N -0.49 -4.84 10.31 -10.70 -0.11 -4.95 16 11 C 0.16 1.56 11.14 -17.14 -0.19 1.37 16 12 C -0.11 -1.32 6.40 -38.78 -0.25 -1.57 16 13 Cl 0.01 0.10 26.26 -51.86 -1.36 -1.26 16 14 C 0.13 2.25 3.44 -66.10 -0.23 2.02 16 15 H 0.10 1.43 7.78 -51.93 -0.40 1.03 16 16 C -0.15 -2.70 6.39 -24.58 -0.16 -2.85 16 17 C 0.12 2.71 4.91 -2.52 -0.01 2.70 16 18 N -0.60 -15.46 2.98 -170.07 -0.51 -15.96 16 19 C -0.24 -7.13 10.55 -15.06 -0.16 -7.29 16 20 H 0.08 2.65 8.06 -52.49 -0.42 2.22 16 21 C 0.03 0.89 5.48 -17.43 -0.10 0.79 16 22 N -0.91 -29.10 13.97 55.49 0.78 -28.33 16 23 Si 0.89 23.42 24.51 -169.99 -4.17 19.26 16 24 H -0.28 -7.22 7.07 56.52 0.40 -6.82 16 25 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 26 H -0.27 -6.97 6.73 56.52 0.38 -6.59 16 27 C 0.13 2.86 6.51 -3.07 -0.02 2.84 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.70 6.07 -51.93 -0.32 0.38 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.95 5.77 -51.93 -0.30 0.65 16 32 H 0.07 0.65 7.80 -51.93 -0.41 0.24 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.88 5.66 -51.93 -0.29 1.59 16 39 H 0.06 1.36 7.91 -51.93 -0.41 0.95 16 40 H 0.02 0.47 5.15 -51.93 -0.27 0.20 16 41 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 42 H 0.04 0.92 6.41 -51.93 -0.33 0.59 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -34.85 351.11 -8.39 -43.24 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -5.69 Total: -3.98 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -2.23 Total: 9.65 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.29 Total: -63.15 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.05 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.17 Total: 19.26 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.36 Total: -1.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.85 -8.39 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033973379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.167 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds