Wall clock time and date at job start Tue Mar 31 2020 20:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31931 * 119.01752 * 2 1 4 4 C 1.32137 * 121.05827 * 179.97438 * 3 2 1 5 5 C 1.38988 * 119.12468 * 359.97438 * 4 3 2 6 6 Cl 1.73596 * 120.88921 * 180.02562 * 5 4 3 7 7 C 1.39634 * 118.22603 * 359.97438 * 5 4 3 8 8 C 1.48365 * 120.56366 * 180.02562 * 7 5 4 9 9 O 1.21491 * 119.99999 * 7.57424 * 8 7 5 10 10 N 1.34782 * 120.00210 * 187.56540 * 8 7 5 11 11 C 1.46920 * 120.62989 * 9.72217 * 10 8 7 12 12 C 1.53190 * 108.77755 * 126.36702 * 11 10 8 13 13 C 1.53048 * 109.31345 * 54.63429 * 12 11 10 14 14 H 1.08991 * 109.46447 * 178.61477 * 13 12 11 15 15 N 1.46508 * 109.45570 * 58.65588 * 13 12 11 16 16 C 1.36934 * 119.99755 * 85.00221 * 15 13 12 17 17 H 1.08004 * 120.00054 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99629 * 179.97438 * 16 15 13 19 19 N 1.31628 * 119.99959 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00462 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47051 * 89.99556 * 20 18 16 22 22 H 1.48500 * 109.47294 * 209.99828 * 20 18 16 23 23 H 1.48498 * 109.46841 * 329.99571 * 20 18 16 24 24 C 1.53042 * 109.53566 * 298.63920 * 13 12 11 25 25 H 1.08997 * 109.49999 * 301.41099 * 24 13 12 26 26 C 1.53000 * 109.49730 * 181.34561 * 24 13 12 27 27 C 1.46923 * 120.62937 * 189.44487 * 10 8 7 28 28 N 1.31514 * 119.02160 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46935 * 90.00176 * 1 2 3 30 30 H 1.08991 * 109.46988 * 209.99780 * 1 2 3 31 31 H 1.08999 * 109.46804 * 330.00238 * 1 2 3 32 32 H 1.07998 * 120.44011 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.58962 * 246.15536 * 11 10 8 34 34 H 1.09001 * 109.58911 * 6.58056 * 11 10 8 35 35 H 1.09002 * 109.50140 * 174.58536 * 12 11 10 36 36 H 1.09004 * 109.49924 * 294.69071 * 12 11 10 37 37 H 0.97002 * 119.99424 * 265.00106 * 15 13 12 38 38 H 0.96993 * 120.00107 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47128 * 59.99187 * 26 24 13 40 40 H 1.08997 * 109.47327 * 180.02562 * 26 24 13 41 41 H 1.09002 * 109.47277 * 300.00133 * 26 24 13 42 42 H 1.09002 * 109.58802 * 353.41392 * 27 10 8 43 43 H 1.09002 * 109.58884 * 113.84570 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2008 0.0005 5 6 4.1868 0.0115 0.0016 6 17 5.9227 0.0198 0.0030 7 6 3.4758 -1.1903 0.0026 8 6 4.1912 -2.4901 0.0044 9 8 5.3978 -2.5192 0.1436 10 7 3.5026 -3.6386 -0.1483 11 6 2.0834 -3.6157 -0.5279 12 6 1.8896 -4.4983 -1.7649 13 6 2.4416 -5.8971 -1.4802 14 1 2.2827 -6.5342 -2.3501 15 7 1.7481 -6.4692 -0.3234 16 6 0.5541 -7.1178 -0.4928 17 1 0.1238 -7.2079 -1.4793 18 6 -0.1026 -7.6603 0.6031 19 7 -1.2501 -8.2842 0.4403 20 14 0.6421 -7.5051 2.3093 21 1 0.1562 -6.2564 2.9496 22 1 0.2395 -8.6730 3.1333 23 1 2.1225 -7.4623 2.2011 24 6 3.9399 -5.8051 -1.1823 25 1 4.4531 -5.3567 -2.0329 26 6 4.4976 -7.2075 -0.9309 27 6 4.1584 -4.9374 0.0559 28 7 2.1451 -1.1500 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.9812 2.1508 0.0001 33 1 1.4791 -4.0003 0.2937 34 1 1.7831 -2.5934 -0.7578 35 1 0.8274 -4.5672 -1.9998 36 1 2.4222 -4.0622 -2.6101 37 1 2.1349 -6.3885 0.5625 38 1 -1.7092 -8.6630 1.2061 39 1 4.3403 -7.8250 -1.8152 40 1 5.5646 -7.1415 -0.7183 41 1 3.9849 -7.6552 -0.0795 42 1 5.2268 -4.7870 0.2110 43 1 3.7267 -5.4320 0.9260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036211100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:31 Heat of formation + Delta-G solvation = 49.661214 kcal Electronic energy + Delta-G solvation = -28084.844588 eV Core-core repulsion = 24192.683006 eV Total energy + Delta-G solvation = -3892.161582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78187 -39.92531 -37.94877 -36.94089 -34.92179 -34.02408 -33.34479 -32.72637 -31.51128 -29.75265 -28.70903 -27.18280 -25.93645 -24.66101 -23.34254 -23.12354 -21.66951 -20.49149 -18.78637 -18.40973 -17.84135 -17.17787 -16.61130 -16.13459 -15.90609 -15.27501 -15.05804 -14.65920 -14.42664 -14.12109 -13.75916 -13.57994 -13.52507 -13.29933 -12.96711 -12.68958 -12.58901 -12.45215 -12.10908 -11.95421 -11.67660 -11.65429 -11.55748 -11.36532 -11.18809 -10.99672 -10.90636 -10.58047 -10.55507 -10.22972 -10.13089 -9.86494 -9.56557 -9.51292 -9.13251 -8.83208 -8.38620 -7.27630 -5.79353 -3.14152 0.01692 0.33388 1.64928 2.54127 2.77010 3.30634 3.33191 3.36230 3.42808 3.44600 3.55284 3.98081 4.23498 4.55918 4.58400 4.87959 5.10512 5.13860 5.27828 5.30565 5.35596 5.39558 5.43381 5.57705 5.66610 5.74621 5.76576 5.90096 5.90816 5.99725 6.12179 6.23062 6.29051 6.36944 6.40821 6.54507 6.63741 6.69392 6.78505 6.90295 7.41485 7.51091 7.97254 8.02815 8.39870 9.18176 9.90963 10.11059 11.39203 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013502 B = 0.004064 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.221481 B = 6888.837288 C = 8037.507750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.315 3.685 3 N -0.494 5.494 4 C 0.168 3.832 5 C -0.112 4.112 6 Cl -0.002 7.002 7 C 0.153 3.847 8 C 0.559 3.441 9 O -0.517 6.517 10 N -0.576 5.576 11 C 0.082 3.918 12 C -0.150 4.150 13 C 0.183 3.817 14 H 0.059 0.941 15 N -0.743 5.743 16 C -0.238 4.238 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.934 5.934 20 Si 0.877 3.123 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.111 4.111 25 H 0.072 0.928 26 C -0.138 4.138 27 C 0.116 3.884 28 N -0.466 5.466 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.184 0.816 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.359 0.641 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.880 18.886 -2.372 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.208 5.208 4 C -0.001 4.001 5 C -0.144 4.144 6 Cl 0.027 6.973 7 C 0.005 3.995 8 C 0.343 3.657 9 O -0.392 6.392 10 N -0.307 5.307 11 C -0.039 4.039 12 C -0.191 4.191 13 C 0.074 3.926 14 H 0.077 0.923 15 N -0.386 5.386 16 C -0.368 4.368 17 H 0.108 0.892 18 C -0.188 4.188 19 N -0.582 5.582 20 Si 0.708 3.292 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.131 4.131 25 H 0.090 0.910 26 C -0.196 4.196 27 C -0.006 4.006 28 N -0.183 5.183 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.201 0.799 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.469 18.686 -2.374 21.082 hybrid contribution 1.346 -0.008 1.307 1.877 sum 10.816 18.678 -1.067 21.610 Atomic orbital electron populations 1.20712 0.84342 1.05106 1.04708 1.23678 0.98967 0.82983 0.89403 1.68335 1.08875 1.30371 1.13258 1.23425 0.89260 0.97347 0.90087 1.22837 0.89820 0.95898 1.05889 1.98436 1.04241 1.98606 1.95995 1.21773 0.89607 0.94345 0.93786 1.17652 0.86309 0.82636 0.79124 1.90844 1.12287 1.86014 1.50064 1.48051 1.12775 1.04817 1.65018 1.22847 0.78757 1.03951 0.98358 1.22532 1.02399 0.97969 0.96191 1.20208 0.88514 0.92278 0.91642 0.92302 1.42823 1.24318 1.67467 1.04040 1.19055 0.95104 1.26941 0.95720 0.89166 1.24613 0.96798 1.00363 0.97059 1.69689 1.16446 1.42271 1.29775 0.86679 0.78685 0.77445 0.86434 1.21155 1.21766 1.20475 1.21672 0.98113 0.95903 0.97417 0.91009 1.21676 0.99334 0.95585 1.02974 1.21676 0.98619 0.81863 0.98423 1.68695 1.07268 1.28941 1.13425 0.88802 0.88596 0.89095 0.79883 0.90418 0.85482 0.90209 0.93407 0.80663 0.93105 0.92255 0.93519 0.91627 0.89286 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.31 36.01 0.37 -0.36 16 2 C 0.32 3.49 7.64 -157.32 -1.20 2.29 16 3 N -0.49 -5.20 10.31 -10.70 -0.11 -5.31 16 4 C 0.17 1.58 11.14 -17.14 -0.19 1.39 16 5 C -0.11 -1.31 6.40 -38.78 -0.25 -1.56 16 6 Cl 0.00 -0.02 26.28 -51.86 -1.36 -1.38 16 7 C 0.15 2.11 6.61 -82.61 -0.55 1.56 16 8 C 0.56 8.76 7.64 -12.09 -0.09 8.67 16 9 O -0.52 -8.76 13.64 5.37 0.07 -8.68 16 10 N -0.58 -9.14 2.98 -173.95 -0.52 -9.66 16 11 C 0.08 1.31 5.62 -3.72 -0.02 1.29 16 12 C -0.15 -2.45 5.78 -26.61 -0.15 -2.60 16 13 C 0.18 3.30 2.53 -67.88 -0.17 3.13 16 14 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 15 N -0.74 -16.18 3.45 -53.38 -0.18 -16.36 16 16 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 17 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 18 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -28.44 13.97 55.49 0.78 -27.67 16 20 Si 0.88 21.56 27.74 -169.99 -4.71 16.84 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 24 C -0.11 -1.72 2.65 -90.72 -0.24 -1.97 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 C -0.14 -2.07 9.06 37.16 0.34 -1.73 16 27 C 0.12 1.84 5.41 -3.93 -0.02 1.82 16 28 N -0.47 -6.06 6.22 -7.31 -0.05 -6.10 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.08 1.42 7.74 -51.93 -0.40 1.02 16 34 H 0.13 1.87 4.12 -77.75 -0.32 1.55 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.36 7.90 3.80 -40.82 -0.16 7.74 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.12 7.54 -51.93 -0.39 0.73 16 42 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 43 H 0.07 1.20 6.64 -51.93 -0.34 0.86 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -31.13 356.50 -8.94 -40.07 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.79 Total: 7.30 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.43 Total: 5.60 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -0.08 Total: -65.10 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.36 Total: -1.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.13 -8.94 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036211100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.728 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds