Wall clock time and date at job start Tue Mar 31 2020 20:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31934 * 119.01725 * 2 1 4 4 C 1.32136 * 121.05670 * 180.02562 * 3 2 1 5 5 C 1.38987 * 119.12471 * 359.73029 * 4 3 2 6 6 Cl 1.73602 * 120.88532 * 180.29388 * 5 4 3 7 7 C 1.39638 * 118.22681 * 0.53050 * 5 4 3 8 8 C 1.48369 * 120.55994 * 179.73731 * 7 5 4 9 9 O 1.21493 * 120.00176 * 39.43064 * 8 7 5 10 10 N 1.34777 * 119.99730 * 219.42516 * 8 7 5 11 11 C 1.46920 * 120.63059 * 356.19568 * 10 8 7 12 12 C 1.53202 * 108.77592 * 126.41363 * 11 10 8 13 13 C 1.53044 * 109.30775 * 54.63419 * 12 11 10 14 14 H 1.08996 * 109.46013 * 58.66127 * 13 12 11 15 15 N 1.46498 * 109.44548 * 178.62228 * 13 12 11 16 16 C 1.36938 * 120.00372 * 275.06158 * 15 13 12 17 17 H 1.08002 * 119.99388 * 0.02562 * 16 15 13 18 18 C 1.38808 * 120.00215 * 180.02562 * 16 15 13 19 19 N 1.31612 * 120.00392 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47017 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47283 * 119.99946 * 20 18 16 23 23 H 1.48503 * 109.47126 * 240.00199 * 20 18 16 24 24 C 1.53033 * 109.53863 * 298.63440 * 13 12 11 25 25 C 1.46927 * 120.62724 * 176.22150 * 10 8 7 26 26 H 1.08998 * 109.58903 * 353.37088 * 25 10 8 27 27 C 1.53003 * 109.58671 * 113.65693 * 25 10 8 28 28 N 1.31521 * 119.02272 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46963 * 269.97583 * 1 2 3 30 30 H 1.08992 * 109.47040 * 29.98218 * 1 2 3 31 31 H 1.09008 * 109.46624 * 149.97990 * 1 2 3 32 32 H 1.08000 * 120.43462 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.59148 * 246.20202 * 11 10 8 34 34 H 1.08997 * 109.59116 * 6.62641 * 11 10 8 35 35 H 1.09000 * 109.49860 * 174.58428 * 12 11 10 36 36 H 1.08994 * 109.49403 * 294.68484 * 12 11 10 37 37 H 0.96998 * 120.00026 * 95.05830 * 15 13 12 38 38 H 0.97002 * 120.00292 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.50225 * 301.41493 * 24 13 12 40 40 H 1.09004 * 109.52412 * 181.33586 * 24 13 12 41 41 H 1.09000 * 109.47086 * 60.00001 * 27 25 10 42 42 H 1.08998 * 109.46928 * 179.97438 * 27 25 10 43 43 H 1.08996 * 109.47152 * 299.99488 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2008 -0.0005 5 6 4.1867 0.0115 0.0047 6 17 5.9227 0.0199 0.0119 7 6 3.4758 -1.1904 -0.0012 8 6 4.1913 -2.4901 -0.0019 9 8 5.1937 -2.6322 0.6697 10 7 3.7292 -3.5133 -0.7476 11 6 2.4735 -3.3842 -1.4994 12 6 2.7376 -3.7419 -2.9655 13 6 3.3753 -5.1311 -3.0406 14 1 2.7097 -5.8615 -2.5806 15 7 3.5990 -5.4899 -4.4432 16 6 2.5893 -6.0564 -5.1745 17 1 1.6279 -6.2382 -4.7173 18 6 2.8015 -6.3968 -6.5034 19 7 3.9729 -6.1748 -7.0607 20 14 1.4238 -7.1689 -7.5011 21 1 0.2157 -7.3116 -6.6494 22 1 1.1098 -6.3020 -8.6652 23 1 1.8509 -8.5075 -7.9818 24 6 4.7130 -5.1210 -2.2973 25 6 4.4713 -4.7790 -0.8237 26 1 5.4276 -4.6733 -0.3115 27 6 3.6558 -5.8923 -0.1628 28 7 2.1451 -1.1501 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 3.9811 2.1508 -0.0001 33 1 1.7285 -4.0640 -1.0860 34 1 2.1116 -2.3583 -1.4331 35 1 1.7962 -3.7436 -3.5149 36 1 3.4135 -3.0072 -3.4031 37 1 4.4624 -5.3262 -4.8539 38 1 4.1210 -6.4124 -7.9894 39 1 5.3703 -4.3734 -2.7412 40 1 5.1781 -6.1041 -2.3711 41 1 2.7022 -5.9998 -0.6796 42 1 4.2079 -6.8303 -0.2207 43 1 3.4764 -5.6398 0.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044766411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:58 Heat of formation + Delta-G solvation = 32.317197 kcal Electronic energy + Delta-G solvation = -27595.229870 eV Core-core repulsion = 23702.316195 eV Total energy + Delta-G solvation = -3892.913675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79975 -40.03680 -37.76660 -36.99977 -34.79447 -34.36987 -33.42407 -32.19213 -31.83253 -29.39493 -28.78077 -27.34789 -26.20368 -24.20327 -23.71223 -22.95113 -21.87652 -20.76796 -18.95544 -18.38185 -17.58670 -17.05136 -16.74539 -16.28247 -15.78504 -15.26782 -14.99865 -14.81592 -14.13037 -13.98051 -13.90928 -13.53907 -13.48293 -13.37955 -12.96058 -12.79025 -12.75176 -12.57216 -12.19348 -11.98119 -11.80508 -11.66466 -11.55196 -11.33549 -11.10865 -10.94886 -10.90000 -10.72067 -10.48349 -10.45418 -10.18867 -9.77981 -9.65897 -9.52755 -9.43345 -8.91493 -8.58157 -6.99970 -5.80120 -3.09330 0.05405 0.32950 1.59055 2.40895 2.66069 3.13435 3.40273 3.45825 3.47213 3.48284 3.57345 3.91338 4.21803 4.52325 4.55142 4.84465 5.03674 5.17321 5.18690 5.24529 5.27871 5.34855 5.40594 5.44971 5.58281 5.69297 5.74492 5.78841 5.87907 5.88442 6.05730 6.18925 6.23806 6.25886 6.37823 6.42321 6.49395 6.57483 6.86145 7.01678 7.32570 7.45013 7.66516 7.94694 8.38010 9.49421 10.06842 10.41463 11.42488 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.003264 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.457561 B = 8576.000065 C = 9258.607417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.316 3.684 3 N -0.494 5.494 4 C 0.170 3.830 5 C -0.115 4.115 6 Cl -0.009 7.009 7 C 0.159 3.841 8 C 0.567 3.433 9 O -0.516 6.516 10 N -0.574 5.574 11 C 0.098 3.902 12 C -0.153 4.153 13 C 0.179 3.821 14 H 0.053 0.947 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.134 4.134 25 C 0.141 3.859 26 H 0.098 0.902 27 C -0.160 4.160 28 N -0.473 5.473 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.185 0.815 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 13.580 17.291 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.209 5.209 4 C 0.001 3.999 5 C -0.147 4.147 6 Cl 0.020 6.980 7 C 0.011 3.989 8 C 0.351 3.649 9 O -0.391 6.391 10 N -0.306 5.306 11 C -0.025 4.025 12 C -0.194 4.194 13 C 0.069 3.931 14 H 0.070 0.930 15 N -0.364 5.364 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.173 4.173 25 C 0.039 3.961 26 H 0.116 0.884 27 C -0.218 4.218 28 N -0.191 5.191 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.202 0.798 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.364 13.337 17.560 22.306 hybrid contribution 0.589 -0.203 -0.922 1.113 sum -2.775 13.134 16.638 21.378 Atomic orbital electron populations 1.20665 0.84461 1.05010 1.04396 1.23509 0.98778 0.82863 0.89865 1.68329 1.08880 1.30304 1.13383 1.23399 0.89217 0.97349 0.89891 1.22821 0.89536 0.96030 1.06349 1.98439 1.04672 1.98685 1.96196 1.21699 0.89748 0.94207 0.93282 1.17627 0.83903 0.82287 0.81089 1.90828 1.24648 1.81716 1.41920 1.48116 1.24275 1.12780 1.45396 1.22275 0.84460 1.03473 0.92263 1.22725 1.02493 1.00853 0.93317 1.20204 0.93314 0.92960 0.86666 0.92957 1.42442 1.14373 1.73414 1.06196 1.19272 0.92874 1.32186 0.92697 0.91111 1.24738 0.96905 1.02080 0.97130 1.69669 1.21859 1.53535 1.12946 0.86153 0.81287 0.78702 0.80258 1.20529 1.21907 1.21870 1.22229 0.99626 1.02367 0.93036 1.21320 0.95820 0.81773 0.97210 0.88428 1.22131 1.01351 0.98022 1.00248 1.68578 1.07175 1.30315 1.13034 0.89077 0.89044 0.88838 0.79798 0.90921 0.88685 0.90587 0.92577 0.78305 0.93547 0.91795 0.90231 0.91480 0.91095 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.31 36.01 0.37 -0.22 16 2 C 0.32 3.29 7.64 -157.31 -1.20 2.09 16 3 N -0.49 -5.11 10.31 -10.70 -0.11 -5.22 16 4 C 0.17 1.62 11.14 -17.14 -0.19 1.43 16 5 C -0.11 -1.36 6.38 -38.78 -0.25 -1.60 16 6 Cl -0.01 -0.11 27.03 -51.86 -1.40 -1.51 16 7 C 0.16 2.14 6.04 -82.61 -0.50 1.64 16 8 C 0.57 8.59 7.21 -12.09 -0.09 8.50 16 9 O -0.52 -8.72 14.84 5.37 0.08 -8.64 16 10 N -0.57 -8.36 2.68 -166.13 -0.44 -8.81 16 11 C 0.10 1.38 5.64 -3.71 -0.02 1.36 16 12 C -0.15 -2.60 5.66 -26.60 -0.15 -2.75 16 13 C 0.18 3.36 2.53 -67.89 -0.17 3.18 16 14 H 0.05 0.99 6.44 -51.93 -0.33 0.66 16 15 N -0.72 -17.53 5.12 -53.39 -0.27 -17.80 16 16 C -0.24 -6.42 9.93 -15.06 -0.15 -6.56 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.35 5.50 -17.44 -0.10 -0.45 16 19 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 20 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C -0.13 -2.18 5.02 -26.61 -0.13 -2.32 16 25 C 0.14 2.03 3.19 -67.59 -0.22 1.81 16 26 H 0.10 1.43 7.03 -51.93 -0.36 1.07 16 27 C -0.16 -2.01 9.03 37.16 0.34 -1.68 16 28 N -0.47 -5.77 7.32 -7.31 -0.05 -5.83 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.07 0.96 7.50 -51.93 -0.39 0.57 16 34 H 0.10 1.29 4.57 -51.93 -0.24 1.05 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.07 0.87 5.74 -51.93 -0.30 0.57 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -31.58 363.02 -9.21 -40.78 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.72 Total: 7.22 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.46 Total: 4.44 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -0.16 Total: -64.67 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.40 Total: -1.51 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.58 -9.21 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044766411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.098 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds