Wall clock time and date at job start Tue Mar 31 2020 20:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31930 * 119.02151 * 2 1 4 4 C 1.32126 * 121.05918 * 180.02562 * 3 2 1 5 5 C 1.38991 * 119.12833 * 359.97438 * 4 3 2 6 6 Cl 1.73594 * 120.89056 * 180.02562 * 5 4 3 7 7 C 1.39636 * 118.22195 * 0.02562 * 5 4 3 8 8 C 1.48371 * 120.55904 * 179.97438 * 7 5 4 9 9 O 1.21487 * 119.99936 * 7.64891 * 8 7 5 10 10 N 1.34781 * 119.99786 * 187.64524 * 8 7 5 11 11 C 1.46929 * 120.63002 * 357.04399 * 10 8 7 12 12 C 1.53186 * 108.77708 * 126.36725 * 11 10 8 13 13 C 1.53045 * 109.31255 * 54.62965 * 12 11 10 14 14 H 1.08998 * 109.45909 * 58.64649 * 13 12 11 15 15 N 1.46498 * 109.46044 * 178.61525 * 13 12 11 16 16 C 1.36941 * 120.00245 * 275.03074 * 15 13 12 17 17 H 1.08004 * 119.99699 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00227 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99797 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00250 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46759 * 89.99780 * 20 18 16 22 22 H 1.48503 * 109.46959 * 330.00379 * 20 18 16 23 23 H 1.48497 * 109.47320 * 210.00200 * 20 18 16 24 24 C 1.53040 * 109.53019 * 298.62990 * 13 12 11 25 25 C 1.46928 * 120.63039 * 177.01242 * 10 8 7 26 26 H 1.09005 * 109.58152 * 113.84464 * 25 10 8 27 27 C 1.53003 * 109.58321 * 353.42396 * 25 10 8 28 28 N 1.31526 * 119.01735 * 180.29049 * 2 1 3 29 29 H 1.08995 * 109.46963 * 90.00837 * 1 2 3 30 30 H 1.09002 * 109.47065 * 210.00263 * 1 2 3 31 31 H 1.08994 * 109.46846 * 330.00531 * 1 2 3 32 32 H 1.08002 * 120.44052 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.58505 * 6.57575 * 11 10 8 34 34 H 1.09005 * 109.69921 * 246.22320 * 11 10 8 35 35 H 1.09001 * 109.49601 * 294.68173 * 12 11 10 36 36 H 1.09000 * 109.49902 * 174.58355 * 12 11 10 37 37 H 0.97003 * 120.00440 * 95.02403 * 15 13 12 38 38 H 0.96999 * 120.00177 * 180.02562 * 19 18 16 39 39 H 1.08994 * 109.50013 * 181.32299 * 24 13 12 40 40 H 1.09002 * 109.49359 * 301.42032 * 24 13 12 41 41 H 1.09001 * 109.47366 * 68.29939 * 27 25 10 42 42 H 1.09003 * 109.46790 * 188.29593 * 27 25 10 43 43 H 1.09001 * 109.47391 * 308.29561 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1536 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1868 0.0113 -0.0005 6 17 5.9227 0.0197 -0.0005 7 6 3.4757 -1.1904 -0.0005 8 6 4.1912 -2.4903 -0.0011 9 8 5.3976 -2.5196 0.1385 10 7 3.5025 -3.6384 -0.1564 11 6 2.0371 -3.6240 -0.2614 12 6 1.6267 -4.3692 -1.5354 13 6 2.2423 -5.7703 -1.5228 14 1 1.9038 -6.3077 -0.6370 15 7 1.8250 -6.4976 -2.7240 16 6 0.6294 -7.1652 -2.7395 17 1 -0.0060 -7.1551 -1.8662 18 6 0.2337 -7.8539 -3.8779 19 7 -0.9157 -8.4950 -3.8929 20 14 1.3316 -7.8695 -5.3890 21 1 2.2604 -9.0259 -5.3140 22 1 2.1144 -6.6088 -5.4452 23 1 0.4931 -7.9863 -6.6090 24 6 3.7685 -5.6584 -1.4990 25 6 4.2031 -4.9281 -0.2245 26 1 3.9463 -5.5299 0.6473 27 6 5.7140 -4.6898 -0.2598 28 7 2.1450 -1.1501 -0.0058 29 1 -0.3633 -0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 3.9812 2.1506 -0.0009 33 1 1.6844 -2.5938 -0.3109 34 1 1.6016 -4.1180 0.6072 35 1 1.9845 -3.8225 -2.4078 36 1 0.5404 -4.4494 -1.5760 37 1 2.3954 -6.5063 -3.5085 38 1 -1.1921 -8.9766 -4.6882 39 1 4.2067 -6.6562 -1.5138 40 1 4.1058 -5.0994 -2.3719 41 1 6.0419 -4.2934 0.7011 42 1 6.2258 -5.6316 -0.4580 43 1 5.9508 -3.9748 -1.0477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044766420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:08 Heat of formation + Delta-G solvation = 66.678133 kcal Electronic energy + Delta-G solvation = -27747.503413 eV Core-core repulsion = 23856.079740 eV Total energy + Delta-G solvation = -3891.423673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91625 -40.18177 -37.63953 -36.96080 -35.02273 -34.50568 -33.47289 -32.20071 -31.95727 -29.80536 -28.80980 -27.33490 -25.98708 -24.28733 -23.88353 -22.57622 -21.80791 -20.38519 -19.66798 -18.50566 -17.60733 -17.25372 -16.73663 -16.21192 -15.90553 -15.39872 -15.07051 -14.89510 -14.29693 -14.17238 -14.01181 -13.51583 -13.38437 -13.32449 -12.92059 -12.81752 -12.62221 -12.50865 -12.27039 -12.17026 -11.87516 -11.85648 -11.54639 -11.42049 -11.17277 -11.00599 -10.84620 -10.79511 -10.61244 -10.27594 -9.95812 -9.60709 -9.58794 -9.54094 -8.99518 -8.69105 -8.47270 -7.26714 -5.78477 -3.13741 -0.04971 0.24132 1.58751 2.47922 2.67492 3.24964 3.33419 3.36490 3.39930 3.44371 3.46906 3.89465 4.14891 4.49999 4.58006 4.78507 4.97753 5.08168 5.20346 5.25302 5.27266 5.32927 5.41346 5.54611 5.58299 5.64402 5.75098 5.81050 5.91952 6.02071 6.06272 6.11249 6.30525 6.34163 6.38242 6.43075 6.58022 6.71496 6.86874 7.01153 7.33512 7.43290 7.97738 8.00325 8.40808 9.19256 9.92232 10.12369 11.39899 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.003445 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.651996 B = 8126.863668 C = 9286.509032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.317 3.683 3 N -0.494 5.494 4 C 0.171 3.829 5 C -0.113 4.113 6 Cl 0.000 7.000 7 C 0.155 3.845 8 C 0.558 3.442 9 O -0.507 6.507 10 N -0.571 5.571 11 C 0.039 3.961 12 C -0.145 4.145 13 C 0.181 3.819 14 H 0.056 0.944 15 N -0.749 5.749 16 C -0.242 4.242 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.291 1.291 24 C -0.138 4.138 25 C 0.144 3.856 26 H 0.076 0.924 27 C -0.137 4.137 28 N -0.467 5.467 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.185 0.815 33 H 0.165 0.835 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.554 20.783 10.702 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 N -0.209 5.209 4 C 0.003 3.997 5 C -0.145 4.145 6 Cl 0.029 6.971 7 C 0.007 3.993 8 C 0.342 3.658 9 O -0.383 6.383 10 N -0.302 5.302 11 C -0.084 4.084 12 C -0.186 4.186 13 C 0.071 3.929 14 H 0.074 0.926 15 N -0.391 5.391 16 C -0.372 4.372 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.582 5.582 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.204 1.204 23 H -0.218 1.218 24 C -0.177 4.177 25 C 0.042 3.958 26 H 0.094 0.906 27 C -0.194 4.194 28 N -0.184 5.184 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.202 0.798 33 H 0.180 0.820 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.132 20.588 10.824 24.989 hybrid contribution 1.570 -0.226 -1.341 2.077 sum 10.702 20.362 9.483 24.881 Atomic orbital electron populations 1.20735 0.84318 1.05043 1.04913 1.23761 0.99021 0.83151 0.88915 1.68346 1.08902 1.30197 1.13406 1.23463 0.89254 0.97443 0.89561 1.22805 0.89954 0.95789 1.05967 1.98441 1.04048 1.98602 1.95981 1.21991 0.89488 0.94747 0.93096 1.17694 0.86380 0.82450 0.79268 1.90921 1.12417 1.85494 1.49424 1.48153 1.08787 1.05185 1.68063 1.23757 0.77373 1.08811 0.98440 1.22558 1.02177 0.97882 0.95989 1.20206 0.90549 0.91020 0.91102 0.92614 1.42804 1.22652 1.61396 1.12229 1.19074 0.94714 1.23190 1.00194 0.89168 1.24656 0.96869 0.99876 0.97684 1.69698 1.21373 1.37972 1.29171 0.86571 0.80351 0.77702 0.84018 1.21086 1.20442 1.21779 1.22330 0.98124 1.00441 0.96771 1.21409 0.93071 0.82854 0.98491 0.90559 1.22210 0.92736 1.00315 1.04174 1.68224 1.07302 1.27889 1.14994 0.88615 0.88690 0.88999 0.79808 0.81974 0.91946 0.92932 0.90337 0.80744 0.93081 0.90440 0.91969 0.91008 0.93542 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.31 36.01 0.37 -0.25 16 2 C 0.32 3.11 7.64 -157.31 -1.20 1.91 16 3 N -0.49 -4.72 10.31 -10.70 -0.11 -4.83 16 4 C 0.17 1.46 11.14 -17.15 -0.19 1.27 16 5 C -0.11 -1.19 6.40 -38.78 -0.25 -1.44 16 6 Cl 0.00 0.00 26.28 -51.86 -1.36 -1.36 16 7 C 0.15 1.91 6.70 -82.61 -0.55 1.36 16 8 C 0.56 7.80 7.52 -12.09 -0.09 7.71 16 9 O -0.51 -7.50 9.70 5.38 0.05 -7.44 16 10 N -0.57 -8.03 2.97 -166.13 -0.49 -8.52 16 11 C 0.04 0.54 6.22 -3.71 -0.02 0.51 16 12 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 13 C 0.18 3.38 2.73 -67.89 -0.19 3.19 16 14 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 15 N -0.75 -17.43 4.92 -53.38 -0.26 -17.70 16 16 C -0.24 -6.68 10.41 -15.06 -0.16 -6.84 16 17 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 20 Si 0.88 22.09 27.73 -169.99 -4.71 17.38 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 C -0.14 -2.18 4.83 -26.62 -0.13 -2.31 16 25 C 0.14 2.02 3.49 -67.60 -0.24 1.78 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 C -0.14 -1.82 7.61 37.16 0.28 -1.54 16 28 N -0.47 -5.35 6.03 -7.31 -0.04 -5.40 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.19 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.17 2.11 3.36 -102.98 -0.35 1.76 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.36 8.37 5.66 -40.82 -0.23 8.14 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.01 6.68 -51.93 -0.35 0.66 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -32.17 355.24 -9.35 -41.52 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.94 Total: 6.47 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.61 Total: 2.80 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.14 Total: -64.72 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.05 Total: -7.44 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.38 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.36 Total: -1.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.17 -9.35 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044766420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.199 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds