Wall clock time and date at job start Tue Mar 31 2020 20:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31931 * 119.01387 * 2 1 4 4 C 1.32138 * 121.05228 * 180.02562 * 3 2 1 5 5 C 1.38992 * 119.12563 * 359.97438 * 4 3 2 6 6 Cl 1.73602 * 120.88881 * 180.02562 * 5 4 3 7 7 C 1.39636 * 118.22633 * 0.02562 * 5 4 3 8 8 C 1.48367 * 120.56226 * 180.02562 * 7 5 4 9 9 O 1.21488 * 119.99825 * 353.27353 * 8 7 5 10 10 N 1.34777 * 119.99764 * 173.27325 * 8 7 5 11 11 C 1.46919 * 120.63321 * 350.81359 * 10 8 7 12 12 C 1.53195 * 108.77452 * 233.33155 * 11 10 8 13 13 C 1.53041 * 109.31326 * 305.36443 * 12 11 10 14 14 H 1.09007 * 109.45528 * 301.36034 * 13 12 11 15 15 N 1.46494 * 109.45953 * 181.38655 * 13 12 11 16 16 C 1.36938 * 119.99960 * 84.99953 * 15 13 12 17 17 H 1.08003 * 120.00073 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00028 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99997 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00101 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47429 * 90.00165 * 20 18 16 22 22 H 1.48508 * 109.46967 * 210.00104 * 20 18 16 23 23 H 1.48501 * 109.47116 * 329.99417 * 20 18 16 24 24 C 1.53041 * 109.53630 * 61.36400 * 13 12 11 25 25 C 1.46932 * 120.62498 * 170.53022 * 10 8 7 26 26 H 1.09006 * 109.58420 * 246.45588 * 25 10 8 27 27 C 1.52999 * 109.58957 * 6.88256 * 25 10 8 28 28 N 1.31516 * 119.01672 * 180.29415 * 2 1 3 29 29 H 1.09007 * 109.47046 * 90.00475 * 1 2 3 30 30 H 1.08999 * 109.47530 * 210.00025 * 1 2 3 31 31 H 1.08997 * 109.47389 * 330.00472 * 1 2 3 32 32 H 1.07998 * 120.43979 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.58551 * 353.12014 * 11 10 8 34 34 H 1.08999 * 109.58895 * 113.39966 * 11 10 8 35 35 H 1.08995 * 109.49523 * 65.31740 * 12 11 10 36 36 H 1.09001 * 109.49586 * 185.38058 * 12 11 10 37 37 H 0.97000 * 120.00317 * 265.00082 * 15 13 12 38 38 H 0.96998 * 120.00100 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.49327 * 58.58738 * 24 13 12 40 40 H 1.09001 * 109.49509 * 178.65518 * 24 13 12 41 41 H 1.09000 * 109.47241 * 55.72516 * 27 25 10 42 42 H 1.08996 * 109.47223 * 175.73030 * 27 25 10 43 43 H 1.09001 * 109.46608 * 295.72376 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1867 0.0114 -0.0005 6 17 5.9227 0.0197 -0.0005 7 6 3.4757 -1.1904 -0.0005 8 6 4.1911 -2.4902 0.0001 9 8 5.3995 -2.5185 -0.1227 10 7 3.5004 -3.6394 0.1368 11 6 2.0734 -3.6182 0.4857 12 6 1.8526 -4.5082 1.7129 13 6 2.4103 -5.9054 1.4318 14 1 1.9132 -6.3256 0.5574 15 7 2.1712 -6.7686 2.5910 16 6 0.9728 -7.4172 2.7261 17 1 0.2037 -7.2921 1.9783 18 6 0.7464 -8.2356 3.8243 19 7 1.6839 -8.3886 4.7354 20 14 -0.8881 -9.1209 4.0083 21 1 -0.8090 -10.4487 3.3480 22 1 -1.1931 -9.3025 5.4503 23 1 -1.9617 -8.3153 3.3730 24 6 3.9147 -5.8123 1.1670 25 6 4.1589 -4.9371 -0.0664 26 1 3.7425 -5.4241 -0.9483 27 6 5.6624 -4.7255 -0.2555 28 7 2.1450 -1.1501 -0.0059 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 3.9811 2.1507 -0.0001 33 1 1.7685 -2.5973 0.7151 34 1 1.4868 -3.9952 -0.3521 35 1 2.3668 -4.0774 2.5719 36 1 0.7857 -4.5777 1.9247 37 1 2.8618 -6.8808 3.2629 38 1 1.5256 -8.9601 5.5029 39 1 4.4094 -5.3692 2.0313 40 1 4.3155 -6.8105 0.9905 41 1 6.0622 -4.1767 0.5971 42 1 6.1589 -5.6929 -0.3303 43 1 5.8370 -4.1560 -1.1684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044766422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:12 Heat of formation + Delta-G solvation = 59.010904 kcal Electronic energy + Delta-G solvation = -27617.720841 eV Core-core repulsion = 23725.964692 eV Total energy + Delta-G solvation = -3891.756149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83688 -40.13074 -37.54343 -36.90381 -34.89656 -34.37677 -33.43194 -32.16094 -31.93665 -29.29616 -28.77014 -27.16817 -25.92789 -24.26948 -23.77757 -22.81254 -21.78071 -20.38168 -19.53986 -18.42232 -17.30790 -17.04607 -16.62412 -16.16902 -15.82751 -15.39083 -14.97283 -14.82111 -14.35109 -14.05932 -13.68216 -13.57905 -13.40432 -13.22627 -13.02465 -12.77693 -12.55587 -12.37638 -12.20514 -12.13282 -11.76362 -11.58264 -11.48310 -11.38403 -11.04154 -10.90677 -10.77709 -10.72321 -10.49442 -10.22979 -9.88905 -9.70953 -9.61243 -9.51655 -8.96271 -8.75658 -8.41104 -6.96218 -5.77309 -3.06254 -0.00430 0.29691 1.63589 2.52167 2.72949 3.29235 3.38958 3.42391 3.47353 3.49177 3.51564 3.93916 4.21351 4.53963 4.57526 4.84626 5.12537 5.17560 5.19453 5.30987 5.33216 5.38532 5.48284 5.57482 5.63871 5.73142 5.80760 5.91118 6.02159 6.10186 6.17687 6.22316 6.38433 6.39850 6.49122 6.53490 6.55469 6.76005 6.93965 7.08388 7.38953 7.47359 7.68602 8.04819 8.40999 9.52118 10.10146 10.44907 11.45347 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.003213 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.669555 B = 8713.040473 C =10049.864738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.313 3.687 3 N -0.494 5.494 4 C 0.168 3.832 5 C -0.111 4.111 6 Cl 0.000 7.000 7 C 0.151 3.849 8 C 0.559 3.441 9 O -0.505 6.505 10 N -0.574 5.574 11 C 0.075 3.925 12 C -0.149 4.149 13 C 0.177 3.823 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.134 4.134 25 C 0.145 3.855 26 H 0.074 0.926 27 C -0.138 4.138 28 N -0.469 5.469 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.184 0.816 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 20.196 -12.535 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.209 5.209 4 C -0.001 4.001 5 C -0.144 4.144 6 Cl 0.029 6.971 7 C 0.003 3.997 8 C 0.343 3.657 9 O -0.380 6.380 10 N -0.305 5.305 11 C -0.048 4.048 12 C -0.191 4.191 13 C 0.067 3.933 14 H 0.065 0.935 15 N -0.365 5.365 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.173 4.173 25 C 0.043 3.957 26 H 0.092 0.908 27 C -0.195 4.195 28 N -0.186 5.186 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.201 0.799 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.116 20.018 -12.609 23.862 hybrid contribution 0.228 -0.589 0.509 0.811 sum 3.345 19.429 -12.100 23.132 Atomic orbital electron populations 1.20693 0.84472 1.05068 1.04518 1.23653 0.98909 0.83099 0.89573 1.68329 1.08923 1.30344 1.13293 1.23432 0.89248 0.97414 0.89998 1.22841 0.89931 0.95883 1.05735 1.98441 1.04105 1.98607 1.95963 1.21974 0.89546 0.94711 0.93502 1.17711 0.86389 0.82462 0.79108 1.90922 1.12108 1.85439 1.49512 1.48098 1.11870 1.04818 1.65754 1.23003 0.78793 1.05075 0.97920 1.22674 1.02401 0.97720 0.96270 1.20203 0.91819 0.89654 0.91607 0.93495 1.42433 1.16880 1.53291 1.23863 1.19237 0.92347 1.20354 1.05027 0.91176 1.24741 0.97974 1.00784 0.97447 1.69661 1.33010 1.42626 1.12808 0.86213 0.83457 0.79790 0.76863 1.21750 1.21829 1.20755 1.22290 0.98678 0.99421 0.96900 1.21432 0.93953 0.82038 0.98307 0.90763 1.22236 0.93054 1.00179 1.04022 1.68636 1.07413 1.28825 1.13774 0.88956 0.88730 0.89101 0.79899 0.85000 0.91776 0.92663 0.90698 0.78311 0.93525 0.91741 0.90529 0.90568 0.93528 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.31 3.15 7.64 -157.31 -1.20 1.95 16 3 N -0.49 -4.87 10.31 -10.70 -0.11 -4.99 16 4 C 0.17 1.50 11.14 -17.14 -0.19 1.30 16 5 C -0.11 -1.23 6.40 -38.78 -0.25 -1.47 16 6 Cl 0.00 0.00 26.27 -51.86 -1.36 -1.36 16 7 C 0.15 1.92 6.63 -82.61 -0.55 1.38 16 8 C 0.56 8.08 7.57 -12.09 -0.09 7.99 16 9 O -0.50 -7.74 9.62 5.38 0.05 -7.69 16 10 N -0.57 -8.31 2.97 -166.13 -0.49 -8.80 16 11 C 0.07 1.05 5.89 -3.71 -0.02 1.03 16 12 C -0.15 -2.59 5.66 -26.61 -0.15 -2.74 16 13 C 0.18 3.43 2.73 -67.89 -0.19 3.25 16 14 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 15 N -0.72 -17.89 5.12 -53.38 -0.27 -18.16 16 16 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 17 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 C -0.13 -2.25 4.84 -26.61 -0.13 -2.38 16 25 C 0.15 2.10 3.49 -67.60 -0.24 1.87 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 C -0.14 -1.91 7.60 37.16 0.28 -1.63 16 28 N -0.47 -5.50 6.19 -7.31 -0.05 -5.55 16 29 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.76 4.07 -80.13 -0.33 1.44 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.17 6.62 -51.93 -0.34 0.83 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -31.22 358.81 -9.68 -40.90 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.96 Total: 7.28 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.59 Total: 3.19 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.20 Total: -64.81 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.05 Total: -7.69 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.36 Total: -1.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.22 -9.68 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044766422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.911 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds