Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47175 * 2 1 4 4 N 1.34228 * 126.27848 * 264.98396 * 3 2 1 5 5 H 0.96998 * 125.74296 * 0.04603 * 4 3 2 6 6 N 1.39932 * 108.52118 * 180.02562 * 4 3 2 7 7 C 1.30534 * 108.89404 * 359.97438 * 6 4 3 8 8 Cl 1.73604 * 126.00304 * 180.02562 * 7 6 4 9 9 C 1.38066 * 126.27888 * 85.00106 * 3 2 1 10 10 C 1.47381 * 126.42496 * 359.95794 * 9 3 2 11 11 O 1.21603 * 120.00445 * 270.00164 * 10 9 3 12 12 N 1.34780 * 119.99906 * 90.00212 * 10 9 3 13 13 C 1.46666 * 125.34287 * 180.02562 * 12 10 9 14 14 C 1.53716 * 107.94587 * 180.54372 * 13 12 10 15 15 H 1.09005 * 112.56257 * 139.72351 * 14 13 12 16 16 C 1.53697 * 109.34320 * 266.25303 * 14 13 12 17 17 N 1.46635 * 108.00891 * 127.55672 * 16 14 13 18 18 C 1.36937 * 125.32763 * 180.81688 * 17 16 14 19 19 H 1.08004 * 120.00125 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00060 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00019 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00160 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47163 * 89.99822 * 22 20 18 24 24 H 1.48502 * 109.47496 * 210.00071 * 22 20 18 25 25 H 1.48507 * 109.46927 * 329.99915 * 22 20 18 26 26 C 1.46744 * 109.34551 * 0.83802 * 17 16 14 27 27 C 1.53934 * 106.71681 * 341.66079 * 26 17 16 28 28 H 1.09004 * 113.01127 * 150.83366 * 27 26 17 29 29 C 1.46782 * 125.33677 * 359.69120 * 12 10 9 30 30 H 1.09005 * 109.46625 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46535 * 299.99439 * 1 2 3 32 32 H 1.08995 * 109.47602 * 60.00173 * 1 2 3 33 33 H 1.09007 * 109.46747 * 239.99917 * 2 1 3 34 34 H 1.08999 * 109.47352 * 120.00274 * 2 1 3 35 35 H 1.08996 * 109.77138 * 300.16811 * 13 12 10 36 36 H 1.09008 * 109.77154 * 60.92311 * 13 12 10 37 37 H 1.08998 * 109.76058 * 247.19872 * 16 14 13 38 38 H 1.09003 * 109.76109 * 7.91510 * 16 14 13 39 39 H 0.97002 * 120.00107 * 180.02562 * 21 20 18 40 40 H 1.08998 * 110.01189 * 222.34702 * 26 17 16 41 41 H 1.08996 * 110.00889 * 100.97542 * 26 17 16 42 42 H 1.08997 * 110.02900 * 280.77593 * 29 12 10 43 43 H 1.09005 * 110.02547 * 42.19824 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3864 2.1381 -1.0779 5 1 2.3620 1.8291 -1.9971 6 7 2.7960 3.4068 -0.6527 7 6 2.6968 3.4693 0.6473 8 17 3.0898 4.8412 1.6359 9 6 2.2133 2.2234 1.1088 10 6 1.9508 1.8514 2.5105 11 8 0.8537 2.0482 2.9967 12 7 2.9268 1.2931 3.2537 13 6 2.7948 0.8787 4.6544 14 6 4.1478 0.3079 5.1089 15 1 4.4098 0.6101 6.1229 16 6 4.1476 -1.2169 4.9163 17 7 5.3388 -1.5760 4.1401 18 6 5.6786 -2.8446 3.7525 19 1 6.5795 -3.0116 3.1808 20 6 4.8650 -3.9162 4.0944 21 7 3.7673 -3.7128 4.7916 22 14 5.3282 -5.6467 3.5651 23 1 6.1735 -6.2750 4.6120 24 1 4.0956 -6.4527 3.3745 25 1 6.0838 -5.5881 2.2880 26 6 6.1099 -0.3631 3.8441 27 6 5.1566 0.8283 4.0474 28 1 5.6719 1.7389 4.3534 29 6 4.2865 0.9982 2.7860 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.5318 1.7387 5.2701 36 1 2.0237 0.1131 4.7413 37 1 4.1778 -1.7110 5.8874 38 1 3.2506 -1.5201 4.3763 39 1 3.1990 -4.4617 5.0308 40 1 6.4619 -0.3873 2.8128 41 1 6.9566 -0.2839 4.5259 42 1 4.2888 0.0788 2.2007 43 1 4.6618 1.8257 2.1838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048856131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = 61.194737 kcal Electronic energy + Delta-G solvation = -28193.712540 eV Core-core repulsion = 24302.051090 eV Total energy + Delta-G solvation = -3891.661451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73551 -39.88028 -37.95048 -36.97983 -34.87615 -34.30979 -32.34018 -31.62739 -30.44083 -29.52031 -29.26614 -25.70247 -25.45915 -24.34923 -23.25755 -22.05980 -21.47187 -20.09818 -19.30148 -18.95782 -17.84413 -16.91583 -16.48524 -15.95454 -15.54598 -15.35956 -14.88401 -14.84153 -14.47146 -14.08976 -13.73891 -13.69482 -13.15693 -12.93048 -12.74568 -12.60261 -12.19453 -12.05318 -12.01927 -11.95518 -11.53345 -11.48247 -11.44301 -11.36543 -10.93162 -10.87033 -10.81219 -10.40378 -10.12287 -10.10547 -9.86727 -9.78305 -9.64846 -9.63825 -8.88318 -8.63592 -8.27842 -6.86737 -5.75991 -3.09681 1.29237 1.36411 2.03548 2.67478 2.73665 3.35993 3.39808 3.41580 3.43186 4.26685 4.45477 4.57082 4.66940 4.86278 4.94489 5.03691 5.15194 5.25577 5.31447 5.41252 5.47671 5.61466 5.66371 5.68294 5.73221 5.76186 5.85642 5.93689 6.00377 6.09322 6.19604 6.30794 6.39849 6.55811 6.58500 6.65642 6.76720 6.81680 7.08557 7.53245 7.56033 7.77970 7.79994 8.22928 8.38934 9.18436 9.78884 10.42814 11.35246 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.003997 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.358979 B = 7003.667059 C = 7827.915100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.071 4.071 3 C 0.152 3.848 4 N -0.447 5.447 5 H 0.448 0.552 6 N -0.279 5.279 7 C 0.160 3.840 8 Cl 0.018 6.982 9 C -0.258 4.258 10 C 0.609 3.391 11 O -0.536 6.536 12 N -0.595 5.595 13 C 0.121 3.879 14 C -0.123 4.123 15 H 0.091 0.909 16 C 0.185 3.815 17 N -0.602 5.602 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.146 3.854 27 C -0.111 4.111 28 H 0.090 0.910 29 C 0.118 3.882 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.253 0.747 40 H 0.036 0.964 41 H 0.020 0.980 42 H 0.077 0.923 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 11.991 -9.188 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C 0.020 3.980 4 N -0.156 5.156 5 H 0.294 0.706 6 N -0.104 5.104 7 C -0.033 4.033 8 Cl 0.046 6.954 9 C -0.274 4.274 10 C 0.396 3.604 11 O -0.413 6.413 12 N -0.328 5.328 13 C -0.001 4.001 14 C -0.143 4.143 15 H 0.109 0.891 16 C 0.061 3.939 17 N -0.329 5.329 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.019 3.981 27 C -0.131 4.131 28 H 0.108 0.892 29 C -0.005 4.005 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.095 0.905 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.880 12.685 -9.887 16.339 hybrid contribution 0.201 -1.316 0.004 1.331 sum -2.680 11.369 -9.884 15.301 Atomic orbital electron populations 1.21757 0.92881 1.03030 1.02935 1.20456 0.97465 0.87682 1.05430 1.21481 0.95484 0.95119 0.85937 1.45803 1.51577 1.09200 1.09009 0.70629 1.77111 1.23523 0.99042 1.10751 1.22494 1.00165 0.90047 0.90572 1.98413 1.92227 1.39631 1.65154 1.19695 1.18662 0.94348 0.94655 1.16643 0.83164 0.77135 0.83504 1.90773 1.23038 1.54742 1.72708 1.48167 1.12180 1.59493 1.12914 1.21849 0.98485 0.98981 0.80808 1.23160 0.92567 1.00143 0.98385 0.89079 1.21112 0.90705 0.85593 0.96537 1.44209 1.23893 1.01678 1.63074 1.19018 1.05959 0.81889 1.28924 0.90468 1.24777 0.97144 0.97895 1.00361 1.69956 1.14427 1.29708 1.42630 0.86157 0.77171 0.84498 0.78131 1.21595 1.21702 1.20759 1.21157 0.93092 0.85876 0.97969 1.22942 0.96694 0.98966 0.94477 0.89175 1.22055 0.80833 1.00628 0.97008 0.91032 0.91133 0.92704 0.89526 0.87872 0.92126 0.90704 0.93764 0.93040 0.93705 0.94542 0.96232 0.90486 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.90 37.16 0.37 -1.15 16 2 C -0.07 -0.76 6.27 -27.88 -0.17 -0.94 16 3 C 0.15 1.85 6.55 -81.61 -0.53 1.32 16 4 N -0.45 -4.66 7.28 33.86 0.25 -4.41 16 5 H 0.45 2.91 8.96 -182.73 -1.64 1.27 16 6 N -0.28 -3.67 12.64 33.18 0.42 -3.25 16 7 C 0.16 2.28 7.89 -16.91 -0.13 2.14 16 8 Cl 0.02 0.24 29.19 -51.86 -1.51 -1.28 16 9 C -0.26 -3.84 4.82 -105.04 -0.51 -4.35 16 10 C 0.61 10.44 7.28 -12.54 -0.09 10.35 16 11 O -0.54 -10.68 17.42 5.27 0.09 -10.59 16 12 N -0.60 -9.90 3.31 -173.44 -0.57 -10.47 16 13 C 0.12 2.04 6.23 -3.58 -0.02 2.02 16 14 C -0.12 -2.13 4.02 -88.61 -0.36 -2.48 16 15 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.19 4.18 4.75 -3.61 -0.02 4.16 16 17 N -0.60 -14.27 3.37 -171.93 -0.58 -14.85 16 18 C -0.23 -6.04 10.25 -15.06 -0.15 -6.20 16 19 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 21 N -0.92 -25.82 10.25 55.49 0.57 -25.25 16 22 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.15 2.76 6.37 -3.42 -0.02 2.74 16 27 C -0.11 -1.77 4.19 -88.24 -0.37 -2.14 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 29 C 0.12 1.86 5.83 -3.27 -0.02 1.84 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.35 8.08 -51.93 -0.42 0.93 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.38 7.44 -51.92 -0.39 0.99 16 37 H 0.04 1.13 7.45 -51.93 -0.39 0.74 16 38 H 0.05 1.30 6.51 -51.93 -0.34 0.97 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.04 0.67 7.94 -51.93 -0.41 0.26 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 1.36 7.72 -51.93 -0.40 0.96 16 43 H 0.06 0.89 7.81 -51.93 -0.41 0.48 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -31.76 367.34 -10.27 -42.03 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.32 Total: -0.78 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -2.13 Total: 7.09 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.08 Total: -58.24 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.51 Total: -1.28 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.76 -10.27 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048856131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.226 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds