Wall clock time and date at job start Tue Mar 31 2020 20:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47127 * 2 1 4 4 N 1.35639 * 126.43555 * 265.02631 * 3 2 1 5 5 H 0.96998 * 124.93670 * 0.02562 * 4 3 2 6 6 N 1.28472 * 110.12855 * 179.70282 * 4 3 2 7 7 C 1.31828 * 110.13780 * 0.45716 * 6 4 3 8 8 C 1.47662 * 126.45983 * 179.81990 * 7 6 4 9 9 O 1.21583 * 119.99811 * 179.68691 * 8 7 6 10 10 N 1.34777 * 120.00185 * 359.41203 * 8 7 6 11 11 C 1.46667 * 125.33716 * 180.27731 * 10 8 7 12 12 C 1.53723 * 107.94058 * 180.53928 * 11 10 8 13 13 H 1.09004 * 112.55857 * 139.71716 * 12 11 10 14 14 C 1.53683 * 109.34565 * 266.25074 * 12 11 10 15 15 N 1.46640 * 108.00903 * 127.55906 * 14 12 11 16 16 C 1.36941 * 125.32849 * 180.82153 * 15 14 12 17 17 H 1.08004 * 120.00027 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99957 * 0.02562 * 16 15 14 19 19 N 1.31618 * 120.00224 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99800 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47380 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46957 * 120.00304 * 20 18 16 23 23 H 1.48498 * 109.47341 * 240.00349 * 20 18 16 24 24 C 1.46735 * 109.34104 * 0.83660 * 15 14 12 25 25 C 1.53931 * 106.72224 * 341.66011 * 24 15 14 26 26 H 1.09000 * 113.00872 * 150.82863 * 25 24 15 27 27 C 1.46774 * 125.33584 * 359.96551 * 10 8 7 28 28 C 1.35461 * 126.43188 * 84.99595 * 3 2 1 29 29 Cl 1.73608 * 127.23994 * 0.04831 * 28 3 2 30 30 H 1.09003 * 109.46887 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47640 * 299.99733 * 1 2 3 32 32 H 1.09001 * 109.46892 * 60.00297 * 1 2 3 33 33 H 1.09002 * 109.47292 * 240.00116 * 2 1 3 34 34 H 1.08997 * 109.46864 * 120.00440 * 2 1 3 35 35 H 1.09002 * 109.77289 * 300.16583 * 11 10 8 36 36 H 1.09006 * 109.77521 * 60.92146 * 11 10 8 37 37 H 1.08999 * 109.76887 * 247.20026 * 14 12 11 38 38 H 1.09006 * 109.76301 * 7.91537 * 14 12 11 39 39 H 0.96996 * 120.00205 * 179.97438 * 19 18 16 40 40 H 1.09000 * 110.01066 * 222.34484 * 24 15 14 41 41 H 1.08997 * 110.00880 * 100.97647 * 24 15 14 42 42 H 1.08998 * 110.02937 * 280.77665 * 27 10 8 43 43 H 1.08994 * 110.02489 * 42.20129 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3901 2.1488 -1.0871 5 1 2.3616 1.8302 -2.0029 6 7 2.7657 3.3238 -0.7283 7 6 2.6927 3.4431 0.5825 8 6 3.0416 4.6387 1.3756 9 8 2.9235 4.6213 2.5856 10 7 3.4962 5.7475 0.7588 11 6 3.8812 6.9938 1.4293 12 6 4.3252 7.9945 0.3501 13 1 3.9743 9.0072 0.5491 14 6 5.8494 7.9096 0.1732 15 7 6.1299 7.7106 -1.2523 16 6 7.3764 7.5717 -1.8022 17 1 7.4838 7.4290 -2.8674 18 6 8.5017 7.6141 -0.9906 19 7 8.3708 7.7875 0.3075 20 14 10.2020 7.4253 -1.7409 21 1 10.0777 7.2447 -3.2096 22 1 11.0055 8.6418 -1.4584 23 1 10.8744 6.2399 -1.1511 24 6 4.8660 7.6842 -1.9973 25 6 3.7525 7.4091 -0.9707 26 1 2.7943 7.8443 -1.2545 27 6 3.6898 5.8948 -0.6886 28 6 2.2109 2.2109 1.0857 29 17 1.9123 1.7988 2.7455 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.0292 7.3962 1.9773 36 1 4.7053 6.8033 2.1169 37 1 6.3123 8.8356 0.5141 38 1 6.2408 7.0692 0.7466 39 1 9.1571 7.8167 0.8747 40 1 4.8896 6.8902 -2.7437 41 1 4.6980 8.6464 -2.4810 42 1 4.6216 5.4170 -0.9912 43 1 2.8509 5.4508 -1.2245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048866955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:13 Heat of formation + Delta-G solvation = 66.306089 kcal Electronic energy + Delta-G solvation = -27532.107683 eV Core-core repulsion = 23640.667877 eV Total energy + Delta-G solvation = -3891.439806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.92794 -39.91221 -37.97906 -36.55928 -34.88798 -34.59725 -32.35587 -31.85175 -30.30438 -29.45705 -29.33200 -25.89275 -25.38920 -24.26404 -24.00515 -22.17454 -21.32797 -20.04149 -19.28894 -19.00337 -18.04056 -16.95794 -16.47012 -16.26662 -15.75522 -15.15008 -15.01408 -14.64198 -14.52532 -14.16570 -14.01859 -13.65589 -13.06908 -12.96308 -12.75240 -12.60327 -12.28009 -12.10303 -11.99112 -11.94544 -11.61413 -11.47205 -11.36849 -11.21997 -10.85799 -10.80086 -10.66086 -10.35079 -10.04522 -10.01948 -9.78255 -9.74372 -9.60893 -9.52179 -8.93128 -8.58316 -8.19924 -6.80579 -5.70186 -3.03714 1.42400 1.68629 1.93275 2.74721 3.25939 3.40487 3.45573 3.48454 3.50282 4.15070 4.35071 4.46868 4.50952 4.80555 4.83731 4.98986 5.07496 5.09301 5.24512 5.37058 5.43548 5.53607 5.59332 5.67040 5.69791 5.75717 5.78891 5.85799 6.04081 6.10806 6.26944 6.37542 6.50186 6.57192 6.62647 6.67401 6.75267 6.88445 7.53355 7.59094 7.62173 7.82213 7.85179 8.28967 8.40393 9.24097 9.84817 10.48725 11.41287 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003129 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.422516 B = 8946.835481 C = 9295.429617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C 0.029 3.971 4 N -0.377 5.377 5 H 0.450 0.550 6 N -0.234 5.234 7 C 0.015 3.985 8 C 0.607 3.393 9 O -0.526 6.526 10 N -0.593 5.593 11 C 0.122 3.878 12 C -0.123 4.123 13 H 0.091 0.909 14 C 0.184 3.816 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.147 3.853 25 C -0.113 4.113 26 H 0.088 0.912 27 C 0.118 3.882 28 C -0.100 4.100 29 Cl -0.009 7.009 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.252 0.748 40 H 0.037 0.963 41 H 0.019 0.981 42 H 0.078 0.922 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.573 -13.807 -2.361 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.097 4.097 4 N -0.092 5.092 5 H 0.296 0.704 6 N -0.069 5.069 7 C -0.147 4.147 8 C 0.392 3.608 9 O -0.401 6.401 10 N -0.325 5.325 11 C 0.000 4.000 12 C -0.143 4.143 13 H 0.109 0.891 14 C 0.060 3.940 15 N -0.329 5.329 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.020 3.980 25 C -0.133 4.133 26 H 0.107 0.893 27 C -0.005 4.005 28 C -0.138 4.138 29 Cl 0.020 6.980 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.149 -13.292 -2.372 21.826 hybrid contribution 0.815 -0.682 -0.121 1.069 sum -16.334 -13.973 -2.493 21.640 Atomic orbital electron populations 1.21768 0.93631 1.02483 1.02811 1.20170 0.96759 0.88010 1.04465 1.21152 1.05344 0.96802 0.86446 1.43301 1.47694 1.08545 1.09640 0.70392 1.73889 1.17100 1.01938 1.13978 1.21848 1.07232 0.96011 0.89583 1.16337 0.78173 0.80306 0.85937 1.90822 1.54642 1.82133 1.12459 1.48041 1.62605 1.12768 1.09062 1.21864 0.99667 0.83003 0.95463 1.23159 1.00469 0.97525 0.93144 0.89082 1.21116 0.85951 1.01140 0.85818 1.44212 1.00522 1.85533 1.02601 1.19062 0.81571 1.42793 0.92243 0.90396 1.24802 0.97863 1.02095 0.95625 1.69966 1.27879 1.56177 1.02678 0.86061 0.84420 0.77299 0.78052 1.20549 1.21764 1.21823 1.21146 0.85800 0.97863 0.93200 1.22980 0.98962 0.94285 0.97083 0.89348 1.22210 1.02305 0.96255 0.79700 1.20447 1.10933 0.94424 0.87982 1.98352 1.94416 1.92793 1.12450 0.91473 0.91722 0.92560 0.90071 0.88732 0.92049 0.90620 0.93737 0.93056 0.93771 0.94483 0.96332 0.90329 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.06 -0.34 6.36 -27.88 -0.18 -0.52 16 3 C 0.03 0.29 6.51 -81.90 -0.53 -0.24 16 4 N -0.38 -3.63 6.86 33.62 0.23 -3.39 16 5 H 0.45 2.48 8.96 -190.44 -1.71 0.78 16 6 N -0.23 -3.20 9.42 33.42 0.31 -2.89 16 7 C 0.02 0.25 6.96 -82.76 -0.58 -0.33 16 8 C 0.61 11.30 7.84 -12.41 -0.10 11.20 16 9 O -0.53 -10.83 16.18 5.29 0.09 -10.74 16 10 N -0.59 -10.76 3.31 -173.35 -0.57 -11.33 16 11 C 0.12 2.20 6.23 -3.57 -0.02 2.18 16 12 C -0.12 -2.26 4.02 -88.61 -0.36 -2.62 16 13 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 14 C 0.18 4.41 4.75 -3.61 -0.02 4.39 16 15 N -0.60 -15.03 3.37 -171.94 -0.58 -15.61 16 16 C -0.23 -6.29 10.25 -15.06 -0.15 -6.44 16 17 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 19 N -0.92 -27.03 10.25 55.49 0.57 -26.46 16 20 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.15 2.91 6.37 -3.43 -0.02 2.89 16 25 C -0.11 -1.91 4.19 -88.25 -0.37 -2.28 16 26 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 27 C 0.12 2.02 5.20 -3.29 -0.02 2.00 16 28 C -0.10 -1.37 6.79 -39.31 -0.27 -1.64 16 29 Cl -0.01 -0.12 28.02 -51.86 -1.45 -1.57 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.50 7.44 -51.93 -0.39 1.11 16 37 H 0.04 1.18 7.46 -51.93 -0.39 0.79 16 38 H 0.05 1.39 6.50 -51.93 -0.34 1.05 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.04 0.72 7.94 -51.93 -0.41 0.30 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 1.57 7.72 -51.93 -0.40 1.17 16 43 H 0.08 1.18 6.48 -51.93 -0.34 0.84 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -33.77 361.04 -10.64 -44.42 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -7.32 Total: -2.82 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -2.34 Total: 7.84 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.04 Total: -59.68 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.45 Total: -1.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.77 -10.64 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048866955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.722 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds