Wall clock time and date at job start Tue Mar 31 2020 20:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31928 * 119.02104 * 2 1 4 4 C 1.32132 * 121.05944 * 179.97438 * 3 2 1 5 5 C 1.38981 * 119.12745 * 0.02562 * 4 3 2 6 6 Cl 1.73595 * 120.89341 * 180.02562 * 5 4 3 7 7 C 1.39640 * 118.22375 * 359.97438 * 5 4 3 8 8 C 1.48370 * 120.56116 * 180.02562 * 7 5 4 9 9 O 1.21483 * 120.00319 * 359.97438 * 8 7 5 10 10 N 1.34781 * 119.99966 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00002 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.50208 * 34.93085 * 11 10 8 13 13 C 1.53042 * 109.49628 * 154.99720 * 11 10 8 14 14 C 1.53043 * 109.53892 * 58.58732 * 13 11 10 15 15 C 1.53195 * 109.31365 * 61.35910 * 14 13 11 16 16 H 1.09003 * 109.58086 * 65.29727 * 15 14 13 17 17 C 1.52993 * 109.58759 * 185.57762 * 15 14 13 18 18 N 1.46924 * 108.77807 * 305.36915 * 15 14 13 19 19 C 1.36933 * 120.63168 * 233.58632 * 18 15 14 20 20 H 1.07999 * 119.99945 * 29.01246 * 19 18 15 21 21 C 1.38813 * 120.00266 * 209.01506 * 19 18 15 22 22 N 1.31622 * 119.99937 * 15.04184 * 21 19 18 23 23 Si 1.86799 * 120.00319 * 195.03503 * 21 19 18 24 24 H 1.48503 * 109.46847 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47071 * 119.99575 * 23 21 19 26 26 H 1.48492 * 109.47345 * 240.00304 * 23 21 19 27 27 C 1.46924 * 118.74031 * 53.60609 * 18 15 14 28 28 N 1.31519 * 119.01770 * 179.73043 * 2 1 3 29 29 H 1.09002 * 109.47325 * 89.99643 * 1 2 3 30 30 H 1.09000 * 109.47652 * 329.99989 * 1 2 3 31 31 H 1.09004 * 109.47501 * 209.99766 * 1 2 3 32 32 H 1.08002 * 120.43726 * 180.02562 * 4 3 2 33 33 H 0.96996 * 119.99967 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.45499 * 178.60443 * 13 11 10 35 35 H 1.08994 * 109.46465 * 298.57597 * 13 11 10 36 36 H 1.08995 * 109.49788 * 181.31355 * 14 13 11 37 37 H 1.09002 * 109.49423 * 301.41107 * 14 13 11 38 38 H 1.09001 * 109.47306 * 60.00130 * 17 15 14 39 39 H 1.09000 * 109.47302 * 180.02562 * 17 15 14 40 40 H 1.08998 * 109.47611 * 300.00308 * 17 15 14 41 41 H 0.96991 * 120.00002 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.58871 * 186.60509 * 27 18 15 43 43 H 1.09005 * 109.58495 * 66.18080 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1469 1.1536 0.0000 4 6 3.4674 1.2006 0.0005 5 6 4.1867 0.0114 0.0005 6 17 5.9226 0.0197 0.0018 7 6 3.4756 -1.1904 0.0005 8 6 4.1911 -2.4902 0.0011 9 8 5.4056 -2.5151 0.0011 10 7 3.4934 -3.6434 0.0006 11 6 4.1998 -4.9269 0.0005 12 1 5.1130 -4.8396 0.5892 13 6 3.3004 -6.0049 0.6097 14 6 2.0033 -6.1049 -0.1964 15 6 2.3322 -6.5071 -1.6376 16 1 2.7524 -7.5128 -1.6493 17 6 1.0574 -6.4740 -2.4829 18 7 3.3097 -5.5554 -2.1828 19 6 3.0664 -4.9044 -3.3627 20 1 2.0507 -4.6962 -3.6650 21 6 4.1251 -4.5121 -4.1702 22 7 5.3265 -5.0106 -3.9685 23 14 3.8450 -3.2768 -5.5431 24 1 2.4165 -2.8713 -5.5602 25 1 4.6956 -2.0812 -5.3145 26 1 4.2000 -3.8953 -6.8456 27 6 4.5535 -5.3157 -1.4384 28 7 2.1449 -1.1501 0.0054 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 0.8900 0.5138 31 1 -0.3634 -0.8900 0.5138 32 1 3.9811 2.1507 0.0009 33 1 2.5237 -3.6236 0.0002 34 1 3.8172 -6.9644 0.5867 35 1 3.0671 -5.7428 1.6416 36 1 1.3535 -6.8565 0.2518 37 1 1.4985 -5.1389 -0.1945 38 1 0.6415 -5.4665 -2.4739 39 1 1.2934 -6.7608 -3.5076 40 1 0.3289 -7.1714 -2.0694 41 1 6.0663 -4.7362 -4.5325 42 1 5.1110 -4.5060 -1.9092 43 1 5.1572 -6.2233 -1.4338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071871028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:36 Heat of formation + Delta-G solvation = 36.836585 kcal Electronic energy + Delta-G solvation = -28409.277994 eV Core-core repulsion = 24516.560294 eV Total energy + Delta-G solvation = -3892.717699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36436 -39.36512 -37.59889 -36.63499 -34.29837 -33.95600 -33.09166 -32.72074 -30.62417 -29.86518 -28.50491 -26.51450 -25.59172 -24.86520 -23.26231 -22.16895 -21.10997 -20.38314 -18.78938 -18.41440 -17.70501 -16.32225 -16.16399 -15.76080 -15.49450 -15.11867 -14.87560 -14.27149 -13.95745 -13.89138 -13.63964 -13.45764 -13.20803 -13.04043 -12.78253 -12.59831 -12.49314 -11.93963 -11.84812 -11.49130 -11.36224 -11.21601 -11.15414 -11.01461 -10.92259 -10.85313 -10.71916 -10.36601 -10.30987 -10.05500 -9.94461 -9.53412 -9.44596 -9.22539 -9.07965 -8.44659 -8.39533 -6.59259 -5.73966 -3.17364 0.32668 0.62175 1.96131 2.94239 3.25236 3.37355 3.44776 3.46455 3.68952 3.74965 3.81300 4.42526 4.50708 4.59012 4.86953 5.23127 5.31822 5.36452 5.38345 5.42361 5.51753 5.55834 5.60679 5.62763 6.01381 6.05574 6.12084 6.15042 6.33738 6.36125 6.44611 6.50300 6.51944 6.62344 6.67141 6.87769 7.05397 7.13118 7.35872 7.66968 7.72972 7.85321 8.03023 8.49956 8.60995 9.24815 9.89196 10.44904 11.33974 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.005104 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.682916 B = 5484.703637 C = 5908.441384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.315 3.685 3 N -0.498 5.498 4 C 0.163 3.837 5 C -0.112 4.112 6 Cl 0.000 7.000 7 C 0.160 3.840 8 C 0.559 3.441 9 O -0.510 6.510 10 N -0.671 5.671 11 C 0.116 3.884 12 H 0.079 0.921 13 C -0.118 4.118 14 C -0.132 4.132 15 C 0.165 3.835 16 H 0.025 0.975 17 C -0.136 4.136 18 N -0.582 5.582 19 C -0.246 4.246 20 H 0.068 0.932 21 C 0.005 3.995 22 N -0.899 5.899 23 Si 0.892 3.108 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.161 3.839 28 N -0.478 5.478 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.182 0.818 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.252 0.748 42 H 0.098 0.902 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 7.841 11.473 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.213 5.213 4 C -0.005 4.005 5 C -0.145 4.145 6 Cl 0.029 6.971 7 C 0.010 3.990 8 C 0.341 3.659 9 O -0.384 6.384 10 N -0.322 5.322 11 C 0.010 3.990 12 H 0.097 0.903 13 C -0.156 4.156 14 C -0.171 4.171 15 C 0.059 3.941 16 H 0.043 0.957 17 C -0.193 4.193 18 N -0.305 5.305 19 C -0.376 4.376 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.722 3.278 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.035 3.965 28 N -0.195 5.195 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.199 0.801 33 H 0.242 0.758 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.116 0.884 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.168 7.754 11.363 15.512 hybrid contribution 0.623 0.767 -0.920 1.349 sum -6.545 8.521 10.444 14.984 Atomic orbital electron populations 1.20615 0.84789 1.04428 1.04461 1.23357 0.98593 0.82921 0.90355 1.68278 1.08954 1.30392 1.13710 1.23351 0.89253 0.97326 0.90618 1.22879 0.90006 0.96009 1.05559 1.98437 1.04115 1.98606 1.95922 1.21903 0.89408 0.94766 0.92880 1.17502 0.86756 0.82663 0.79024 1.90861 1.12006 1.86276 1.49298 1.45715 1.10790 1.04755 1.70936 1.21920 0.94544 0.81121 1.01366 0.90317 1.21689 0.97118 0.98839 0.97964 1.22079 0.96248 1.00730 0.98047 1.20460 0.90592 0.92537 0.90529 0.95735 1.21792 0.96359 1.00502 1.00651 1.44039 1.17861 1.46123 1.22488 1.19116 0.92484 1.29942 0.96035 0.91421 1.25027 0.96479 1.00245 0.97584 1.69978 1.00222 1.43610 1.40490 0.86388 0.77519 0.81609 0.82297 1.20404 1.21718 1.21671 1.21208 0.88492 1.00445 0.86397 1.68357 1.07648 1.30720 1.12763 0.89069 0.89387 0.89146 0.80080 0.75757 0.90933 0.92961 0.92792 0.92488 0.92894 0.92127 0.94424 0.93738 0.88364 0.95447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.31 36.00 0.37 -0.41 16 2 C 0.31 4.20 7.64 -157.32 -1.20 3.00 16 3 N -0.50 -6.52 10.31 -10.71 -0.11 -6.63 16 4 C 0.16 2.04 11.14 -17.15 -0.19 1.85 16 5 C -0.11 -1.71 6.40 -38.78 -0.25 -1.96 16 6 Cl 0.00 0.00 26.25 -51.86 -1.36 -1.36 16 7 C 0.16 2.74 6.80 -82.61 -0.56 2.18 16 8 C 0.56 10.88 7.79 -12.09 -0.09 10.78 16 9 O -0.51 -11.01 13.81 5.38 0.07 -10.93 16 10 N -0.67 -12.39 4.91 -54.47 -0.27 -12.66 16 11 C 0.12 2.18 2.81 -67.81 -0.19 1.99 16 12 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 13 C -0.12 -1.84 5.59 -26.69 -0.15 -1.99 16 14 C -0.13 -2.09 5.21 -26.61 -0.14 -2.23 16 15 C 0.17 3.23 3.50 -67.60 -0.24 2.99 16 16 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 17 C -0.14 -2.44 7.94 37.15 0.30 -2.15 16 18 N -0.58 -13.71 2.91 -164.78 -0.48 -14.19 16 19 C -0.25 -6.49 8.61 -15.06 -0.13 -6.62 16 20 H 0.07 1.76 6.20 -52.49 -0.33 1.44 16 21 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 22 N -0.90 -26.33 11.14 55.49 0.62 -25.71 16 23 Si 0.89 22.26 29.58 -169.99 -5.03 17.23 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 27 C 0.16 3.79 4.89 -3.71 -0.02 3.77 16 28 N -0.48 -7.45 9.59 -7.31 -0.07 -7.52 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.41 7.08 6.16 -40.82 -0.25 6.83 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.91 6.40 -51.93 -0.33 0.58 16 38 H 0.05 0.97 7.40 -51.93 -0.38 0.58 16 39 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.10 2.73 6.06 -51.93 -0.31 2.42 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -31.26 360.49 -9.53 -40.79 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.76 Total: 4.26 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -2.58 Total: 11.29 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.31 Total: -66.71 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.36 Total: -1.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.26 -9.53 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071871028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.629 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds