Wall clock time and date at job start Tue Mar 31 2020 20:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47296 * 2 1 4 4 N 1.34241 * 126.27862 * 265.18240 * 3 2 1 5 5 H 0.96996 * 125.73702 * 359.97438 * 4 3 2 6 6 N 1.39932 * 108.52090 * 180.23832 * 4 3 2 7 7 C 1.30534 * 108.89481 * 359.75245 * 6 4 3 8 8 Cl 1.73598 * 126.00350 * 179.97438 * 7 6 4 9 9 C 1.38070 * 126.28288 * 85.00001 * 3 2 1 10 10 C 1.47379 * 126.42371 * 0.02562 * 9 3 2 11 11 O 1.21610 * 120.00419 * 269.71928 * 10 9 3 12 12 N 1.34783 * 119.99627 * 89.71492 * 10 9 3 13 13 C 1.47886 * 134.33900 * 180.02562 * 12 10 9 14 14 C 1.52376 * 85.59017 * 156.49434 * 13 12 10 15 15 C 1.47886 * 134.34022 * 359.97180 * 12 10 9 16 16 C 1.53876 * 116.28084 * 264.17806 * 14 13 12 17 17 C 1.54601 * 102.63063 * 264.38118 * 16 14 13 18 18 N 1.47136 * 107.47544 * 339.39360 * 17 16 14 19 19 C 1.36938 * 125.58219 * 178.97076 * 18 17 16 20 20 H 1.08003 * 120.00338 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00180 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00169 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47243 * 60.00405 * 23 21 19 25 25 H 1.48502 * 109.47051 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47278 * 300.00049 * 23 21 19 27 27 C 1.47720 * 108.83064 * 359.00447 * 18 17 16 28 28 H 1.08998 * 109.47420 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47021 * 300.00339 * 1 2 3 30 30 H 1.09000 * 109.47282 * 60.00079 * 1 2 3 31 31 H 1.09002 * 109.47021 * 239.99661 * 2 1 3 32 32 H 1.09000 * 109.47282 * 119.99921 * 2 1 3 33 33 H 1.08997 * 113.85873 * 42.32192 * 13 12 10 34 34 H 1.09005 * 113.96416 * 270.66897 * 13 12 10 35 35 H 1.08998 * 113.85229 * 89.34587 * 15 12 10 36 36 H 1.09003 * 113.85792 * 317.67008 * 15 12 10 37 37 H 1.08999 * 110.74128 * 146.13290 * 16 14 13 38 38 H 1.09004 * 110.87990 * 22.69324 * 16 14 13 39 39 H 1.09002 * 109.86948 * 219.87830 * 17 16 14 40 40 H 1.08999 * 109.86727 * 98.90432 * 17 16 14 41 41 H 0.97000 * 119.99735 * 179.97438 * 22 21 19 42 42 H 1.08992 * 110.40138 * 141.24798 * 27 18 17 43 43 H 1.09001 * 110.40009 * 263.54912 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3829 2.1394 -1.0784 5 1 2.3564 1.8311 -1.9976 6 7 2.7985 3.4059 -0.6526 7 6 2.7019 3.4675 0.6477 8 17 3.1034 4.8363 1.6370 9 6 2.2133 2.2234 1.1088 10 6 1.9521 1.8511 2.5106 11 8 0.8566 2.0515 2.9991 12 7 2.9275 1.2883 3.2513 13 6 3.0170 0.8027 4.6453 14 6 4.1566 -0.0748 4.1421 15 6 4.3336 0.9099 2.9930 16 6 3.7860 -1.5175 3.7558 17 6 4.1217 -2.3084 5.0410 18 7 5.0653 -1.4967 5.8256 19 6 5.5896 -1.8390 7.0435 20 1 6.2773 -1.1720 7.5421 21 6 5.2371 -3.0432 7.6372 22 7 4.3994 -3.8563 7.0294 23 14 5.9530 -3.5103 9.2982 24 1 5.5725 -2.4885 10.3064 25 1 5.4229 -4.8348 9.7108 26 1 7.4329 -3.5795 9.1977 27 6 5.3537 -0.2516 5.0848 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1416 0.2428 4.9742 34 1 3.3296 1.5640 5.3601 35 1 5.0494 1.7053 3.2005 36 1 4.4914 0.4340 2.0251 37 1 4.3951 -1.8619 2.9200 38 1 2.7248 -1.5961 3.5198 39 1 4.5813 -3.2618 4.7800 40 1 3.2130 -2.4810 5.6177 41 1 4.1535 -4.6979 7.4442 42 1 5.4240 0.5916 5.7717 43 1 6.2769 -0.3541 4.5144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072809812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:11 Heat of formation + Delta-G solvation = 95.090245 kcal Electronic energy + Delta-G solvation = -27494.083382 eV Core-core repulsion = 23603.891751 eV Total energy + Delta-G solvation = -3890.191631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85346 -40.33635 -37.99423 -37.07667 -35.56501 -34.48039 -32.26040 -31.71128 -30.13177 -29.24491 -28.46450 -26.24612 -25.72131 -24.39581 -23.67140 -22.20603 -21.82918 -20.28691 -19.10470 -18.32199 -17.88252 -16.83671 -16.45053 -15.98950 -15.60533 -15.45245 -15.26250 -14.75521 -14.67717 -14.36604 -13.95702 -13.73446 -13.33693 -13.03395 -12.90639 -12.40036 -12.36925 -12.25103 -12.14336 -11.92092 -11.78597 -11.67938 -11.53693 -11.07720 -10.98641 -10.91843 -10.71111 -10.44827 -10.20823 -10.13829 -9.89041 -9.76802 -9.74218 -9.56442 -9.03533 -8.60151 -8.50365 -6.84471 -5.71905 -3.05401 1.18836 1.21894 1.90045 2.51918 2.63385 3.06939 3.40820 3.45411 3.46290 4.09422 4.40125 4.47074 4.49126 4.68688 4.79646 4.85301 4.98499 5.10639 5.22381 5.26539 5.47304 5.49008 5.53216 5.55979 5.61052 5.66558 5.67705 5.82821 5.93003 5.94688 6.03439 6.19295 6.21993 6.45585 6.48850 6.62991 6.65667 6.69584 6.95480 7.54400 7.59940 7.81311 7.82914 8.24508 8.26118 9.21079 9.81196 10.46447 11.39615 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.002965 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.446531 B = 9442.645228 C =10217.320333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 C 0.147 3.853 4 N -0.447 5.447 5 H 0.448 0.552 6 N -0.278 5.278 7 C 0.160 3.840 8 Cl 0.020 6.980 9 C -0.257 4.257 10 C 0.615 3.385 11 O -0.534 6.534 12 N -0.629 5.629 13 C 0.133 3.867 14 C -0.104 4.104 15 C 0.118 3.882 16 C -0.118 4.118 17 C 0.179 3.821 18 N -0.604 5.604 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.151 3.849 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.252 0.748 42 H 0.042 0.958 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 10.056 -18.010 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C 0.015 3.985 4 N -0.156 5.156 5 H 0.294 0.706 6 N -0.103 5.103 7 C -0.033 4.033 8 Cl 0.048 6.952 9 C -0.272 4.272 10 C 0.402 3.598 11 O -0.411 6.411 12 N -0.364 5.364 13 C 0.012 3.988 14 C -0.106 4.106 15 C -0.005 4.005 16 C -0.157 4.157 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.024 3.976 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.250 10.842 -18.637 21.976 hybrid contribution 0.311 -0.558 1.062 1.240 sum -3.939 10.284 -17.574 20.740 Atomic orbital electron populations 1.21772 0.92825 1.03049 1.03141 1.20428 0.97556 0.87752 1.05065 1.21476 0.95903 0.95162 0.85986 1.45817 1.51526 1.09290 1.08965 0.70628 1.77139 1.23325 0.99093 1.10760 1.22529 0.99974 0.90211 0.90573 1.98423 1.91972 1.39814 1.65013 1.19751 1.18428 0.94351 0.94664 1.16699 0.83392 0.76138 0.83555 1.90794 1.23411 1.53981 1.72877 1.50202 1.12000 1.59974 1.14222 1.22975 0.98339 0.94775 0.82729 1.22507 0.97266 0.95192 0.95619 1.23043 0.82006 0.96114 0.99352 1.22565 1.00107 0.92681 1.00303 1.21206 0.93893 0.92326 0.87125 1.44514 1.52241 1.16870 1.19455 1.18999 1.21386 1.01963 0.93369 0.90465 1.24784 0.99626 0.97047 0.98856 1.69945 1.37168 1.11478 1.38343 0.86213 0.78452 0.77503 0.83654 1.21156 1.21653 1.21220 1.21213 0.93129 0.90746 0.92486 0.91018 0.91073 0.92596 0.89570 0.88142 0.89672 0.89535 0.89563 0.90414 0.91980 0.92004 0.93885 0.93490 0.93722 0.93959 0.95713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.83 16 2 C -0.07 -0.53 6.27 -27.88 -0.17 -0.71 16 3 C 0.15 1.47 6.55 -81.60 -0.53 0.94 16 4 N -0.45 -3.87 7.28 33.86 0.25 -3.63 16 5 H 0.45 2.12 8.96 -182.73 -1.64 0.48 16 6 N -0.28 -3.29 12.64 33.18 0.42 -2.87 16 7 C 0.16 2.08 7.89 -16.90 -0.13 1.94 16 8 Cl 0.02 0.25 29.19 -51.86 -1.51 -1.27 16 9 C -0.26 -3.37 5.62 -105.04 -0.59 -3.96 16 10 C 0.62 9.54 7.49 -12.54 -0.09 9.44 16 11 O -0.53 -10.13 17.83 5.27 0.09 -10.04 16 12 N -0.63 -9.09 3.62 -188.20 -0.68 -9.77 16 13 C 0.13 2.08 8.14 -3.60 -0.03 2.05 16 14 C -0.10 -1.61 0.99 -154.74 -0.15 -1.77 16 15 C 0.12 1.49 7.97 -3.61 -0.03 1.46 16 16 C -0.12 -1.98 6.35 -25.43 -0.16 -2.15 16 17 C 0.18 4.07 5.39 -2.85 -0.02 4.06 16 18 N -0.60 -14.50 3.41 -170.51 -0.58 -15.08 16 19 C -0.23 -6.13 10.28 -15.06 -0.15 -6.29 16 20 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -26.32 10.30 55.49 0.57 -25.75 16 23 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.15 2.81 6.66 -3.17 -0.02 2.79 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 34 H 0.09 1.29 8.05 -51.93 -0.42 0.88 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 39 H 0.04 1.09 7.49 -51.93 -0.39 0.71 16 40 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 42 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -33.01 375.50 -10.06 -43.07 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -7.43 Total: -3.64 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.82 Total: 6.69 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.02 Total: -57.09 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.51 Total: -1.27 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.01 -10.06 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072809812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.158 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds