Wall clock time and date at job start Tue Mar 31 2020 22:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47442 * 2 1 4 4 N 1.28431 * 125.19317 * 274.99917 * 3 2 1 5 5 C 1.30830 * 110.98675 * 180.02562 * 4 3 2 6 6 C 1.39807 * 107.87463 * 359.73414 * 5 4 3 7 7 Cl 1.73607 * 127.33690 * 180.27002 * 6 5 4 8 8 C 1.36754 * 125.18575 * 95.03299 * 3 2 1 9 9 C 1.47034 * 126.90353 * 359.96895 * 8 3 2 10 10 O 1.21644 * 119.99799 * 269.24611 * 9 8 3 11 11 N 1.34777 * 119.99859 * 89.24650 * 9 8 3 12 12 C 1.47409 * 125.58934 * 354.74590 * 11 9 8 13 13 C 1.54855 * 104.81809 * 204.13638 * 12 11 9 14 14 C 1.55169 * 101.73630 * 322.77190 * 13 12 11 15 15 H 1.09002 * 113.25851 * 158.11979 * 14 13 12 16 16 C 1.53753 * 108.31102 * 285.38330 * 14 13 12 17 17 N 1.46591 * 108.10895 * 124.37344 * 16 14 13 18 18 C 1.36940 * 125.31049 * 181.28423 * 17 16 14 19 19 H 1.07995 * 120.00107 * 0.02721 * 18 17 16 20 20 C 1.38817 * 119.99721 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00094 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47169 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47092 * 119.99730 * 22 20 18 25 25 H 1.48492 * 109.47225 * 240.00032 * 22 20 18 26 26 C 1.46713 * 109.37917 * 1.28299 * 17 16 14 27 27 C 1.46702 * 125.58913 * 174.43617 * 11 9 8 28 28 H 1.09007 * 111.52974 * 56.36475 * 27 11 9 29 29 H 1.08993 * 109.46731 * 175.01083 * 1 2 3 30 30 H 1.08996 * 109.46619 * 295.01315 * 1 2 3 31 31 H 1.08995 * 109.46741 * 55.00662 * 1 2 3 32 32 H 1.09005 * 109.47335 * 240.00609 * 2 1 3 33 33 H 1.09004 * 109.47499 * 120.00438 * 2 1 3 34 34 H 1.08002 * 126.06369 * 179.97438 * 5 4 3 35 35 H 1.09001 * 110.36754 * 322.97251 * 12 11 9 36 36 H 1.08999 * 110.36894 * 85.29980 * 12 11 9 37 37 H 1.09001 * 110.98009 * 80.88480 * 13 12 11 38 38 H 1.09002 * 110.97627 * 204.62187 * 13 12 11 39 39 H 1.08998 * 109.74850 * 244.04449 * 16 14 13 40 40 H 1.08999 * 109.74593 * 4.70739 * 16 14 13 41 41 H 0.96993 * 119.99797 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.99011 * 222.71728 * 26 17 16 43 43 H 1.08994 * 109.98705 * 101.40217 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1790 2.1095 -1.0456 5 6 2.6287 3.2957 -0.7258 6 6 2.7677 3.3415 0.6646 7 17 3.3206 4.6785 1.6241 8 6 2.3736 2.0914 1.1134 9 6 2.3380 1.6244 2.5071 10 8 1.3388 1.7938 3.1799 11 7 3.4123 1.0086 3.0391 12 6 4.6399 0.6427 2.3098 13 6 5.2508 -0.5248 3.1233 14 6 4.9381 -0.0919 4.5802 15 1 4.9390 -0.9228 5.2857 16 6 5.8968 1.0480 4.9616 17 7 5.0923 2.1937 5.3964 18 6 5.5906 3.4067 5.7908 19 1 6.6571 3.5762 5.7969 20 6 4.7247 4.4185 6.1829 21 7 3.4248 4.2121 6.1750 22 14 5.4045 6.0729 6.7216 23 1 6.8871 6.0491 6.6403 24 1 4.8775 7.1382 5.8313 25 1 4.9893 6.3468 8.1207 26 6 3.6699 1.8381 5.3429 27 6 3.5543 0.5985 4.4405 28 1 2.7429 -0.0610 4.7484 29 1 -0.3632 -1.0237 -0.0894 30 1 -0.3632 0.4345 0.9313 31 1 -0.3632 0.5893 -0.8419 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8494 4.0987 -1.4135 35 1 4.3971 0.3146 1.2990 36 1 5.3295 1.4863 2.2804 37 1 4.7593 -1.4675 2.8824 38 1 6.3260 -0.5946 2.9586 39 1 6.5476 0.7255 5.7744 40 1 6.4988 1.3278 4.0971 41 1 2.8199 4.9189 6.4493 42 1 3.0955 2.6620 4.9194 43 1 3.3062 1.6055 6.3437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075831370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:30 Heat of formation + Delta-G solvation = 82.947643 kcal Electronic energy + Delta-G solvation = -28862.911092 eV Core-core repulsion = 24972.192919 eV Total energy + Delta-G solvation = -3890.718174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.57527 -40.08802 -37.74437 -36.23840 -34.77981 -34.61892 -32.32093 -30.90781 -30.66101 -29.85472 -28.74950 -26.45069 -24.70790 -24.36064 -23.50546 -21.96318 -21.45981 -20.43364 -19.59469 -18.85102 -17.68944 -16.80281 -16.39486 -15.93674 -15.80418 -15.29474 -14.82424 -14.56970 -14.19820 -14.08065 -13.75836 -13.54877 -13.24096 -12.99000 -12.96041 -12.57648 -12.34870 -12.10673 -11.89740 -11.67324 -11.62673 -11.54529 -11.38195 -11.16219 -11.01384 -10.74962 -10.59676 -10.35200 -10.24680 -10.12978 -9.86235 -9.72295 -9.64066 -9.24024 -8.58347 -8.57989 -8.24107 -6.76955 -5.59860 -3.00199 1.56978 1.91855 2.51775 2.63259 2.90765 3.32289 3.42806 3.47893 3.50926 4.30219 4.41286 4.52773 4.65682 4.72360 4.85783 4.90993 4.93208 5.07021 5.23413 5.33059 5.45215 5.47715 5.50817 5.55025 5.55250 5.70168 5.75954 5.83568 5.85401 5.98344 6.18371 6.19928 6.27652 6.44048 6.49758 6.61918 6.64474 6.82663 7.44756 7.69169 7.78723 7.91610 7.96098 8.36491 8.41853 9.27535 9.89150 10.50812 11.45220 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.005271 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.535547 B = 5310.784059 C = 6504.760817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.119 3.881 3 N -0.269 5.269 4 N -0.278 5.278 5 C 0.019 3.981 6 C -0.118 4.118 7 Cl 0.000 7.000 8 C 0.003 3.997 9 C 0.606 3.394 10 O -0.508 6.508 11 N -0.583 5.583 12 C 0.104 3.896 13 C -0.123 4.123 14 C -0.108 4.108 15 H 0.098 0.902 16 C 0.143 3.857 17 N -0.597 5.597 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.911 5.911 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.156 3.844 27 C 0.113 3.887 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.192 0.808 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.025 0.975 41 H 0.252 0.748 42 H 0.107 0.893 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 -11.374 -13.921 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.058 5.058 4 N -0.108 5.108 5 C -0.159 4.159 6 C -0.155 4.155 7 Cl 0.028 6.972 8 C -0.126 4.126 9 C 0.389 3.611 10 O -0.382 6.382 11 N -0.316 5.316 12 C -0.020 4.020 13 C -0.161 4.161 14 C -0.128 4.128 15 H 0.117 0.883 16 C 0.016 3.984 17 N -0.323 5.323 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.558 5.558 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.030 3.970 27 C 0.009 3.991 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.209 0.791 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.125 0.875 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.819 -11.748 -14.322 18.613 hybrid contribution 0.702 1.624 1.011 2.038 sum -1.118 -10.124 -13.311 16.761 Atomic orbital electron populations 1.22181 0.93080 1.03576 1.04112 1.22028 0.96547 0.76413 1.05098 1.45654 1.46110 1.12198 1.01865 1.73129 1.19698 1.04389 1.13560 1.23467 1.04081 0.95544 0.92855 1.21417 1.10174 0.91213 0.92734 1.98437 1.87426 1.41633 1.69672 1.21329 1.08119 0.93476 0.89716 1.16272 0.82871 0.78154 0.83783 1.90878 1.31632 1.54523 1.61157 1.48171 1.15241 1.57078 1.11131 1.22298 0.86901 0.98026 0.94728 1.22795 1.01210 0.96984 0.95094 1.23077 0.95263 0.98335 0.96083 0.88336 1.21157 0.93112 0.87282 0.96802 1.44137 1.00981 1.09416 1.77784 1.18992 0.91758 0.87575 1.37360 0.90560 1.24764 0.95423 0.98185 1.01573 1.69887 1.00712 1.32132 1.53080 0.86143 0.77887 0.84332 0.78017 1.20554 1.21810 1.21735 1.21694 0.86876 0.93494 0.94928 1.22784 0.96358 0.98761 0.81166 0.89991 0.89970 0.91067 0.91216 0.87717 0.88412 0.79084 0.92035 0.90508 0.91117 0.89782 0.96068 0.95771 0.93725 0.87518 0.95858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.12 1.19 6.91 -4.04 -0.03 1.16 16 3 N -0.27 -3.75 3.35 -57.10 -0.19 -3.94 16 4 N -0.28 -3.89 11.89 30.61 0.36 -3.52 16 5 C 0.02 0.27 12.04 -17.39 -0.21 0.06 16 6 C -0.12 -2.01 6.89 -38.88 -0.27 -2.28 16 7 Cl 0.00 -0.01 29.24 -51.86 -1.52 -1.52 16 8 C 0.00 0.06 5.66 -82.00 -0.46 -0.40 16 9 C 0.61 11.77 6.49 -12.70 -0.08 11.69 16 10 O -0.51 -11.74 17.07 5.24 0.09 -11.65 16 11 N -0.58 -10.40 3.01 -163.67 -0.49 -10.89 16 12 C 0.10 1.50 6.17 -2.57 -0.02 1.49 16 13 C -0.12 -1.48 6.30 -24.61 -0.16 -1.63 16 14 C -0.11 -1.68 4.25 -87.87 -0.37 -2.06 16 15 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.78 6.41 -3.60 -0.02 2.76 16 17 N -0.60 -14.92 3.38 -172.06 -0.58 -15.50 16 18 C -0.23 -6.33 10.25 -15.06 -0.15 -6.48 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C 0.00 -0.08 5.48 -17.43 -0.10 -0.17 16 21 N -0.91 -27.24 10.17 55.49 0.56 -26.67 16 22 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C 0.16 3.84 5.20 -3.53 -0.02 3.82 16 27 C 0.11 2.12 3.65 -66.22 -0.24 1.88 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.94 7.66 -51.93 -0.40 0.54 16 34 H 0.19 2.04 8.06 -52.49 -0.42 1.61 16 35 H 0.06 0.77 7.78 -51.93 -0.40 0.36 16 36 H 0.08 1.28 7.49 -51.93 -0.39 0.89 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.47 6.78 -51.93 -0.35 0.12 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.11 3.08 5.46 -51.93 -0.28 2.80 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -34.08 365.52 -9.04 -43.12 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.01 Total: -1.05 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.75 Total: 8.61 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.34 Total: -60.53 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.52 Total: -1.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.08 -9.04 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075831370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.071 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds