Wall clock time and date at job start Tue Mar 31 2020 20:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47230 * 2 1 4 4 N 1.35642 * 126.43129 * 264.97577 * 3 2 1 5 5 H 0.97011 * 124.93362 * 359.97438 * 4 3 2 6 6 N 1.28470 * 110.13400 * 180.02562 * 4 3 2 7 7 C 1.31824 * 110.13321 * 359.97438 * 6 4 3 8 8 C 1.47667 * 126.46027 * 180.02562 * 7 6 4 9 9 O 1.21575 * 120.00028 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99968 * 0.02562 * 8 7 6 11 11 C 1.47404 * 125.58819 * 0.02562 * 10 8 7 12 12 C 1.54863 * 104.81601 * 204.37646 * 11 10 8 13 13 C 1.55163 * 101.73632 * 322.77262 * 12 11 10 14 14 H 1.09004 * 113.90343 * 158.46999 * 13 12 11 15 15 C 1.53750 * 108.31207 * 285.38197 * 13 12 11 16 16 N 1.46592 * 108.10911 * 124.37866 * 15 13 12 17 17 C 1.36939 * 125.30895 * 181.24541 * 16 15 13 18 18 H 1.08002 * 119.99999 * 12.27463 * 17 16 15 19 19 C 1.38807 * 119.99815 * 192.26920 * 17 16 15 20 20 N 1.31621 * 120.00277 * 206.56060 * 19 17 16 21 21 Si 1.86804 * 120.00057 * 26.56405 * 19 17 16 22 22 H 1.48501 * 109.47176 * 270.00075 * 21 19 17 23 23 H 1.48506 * 109.46820 * 29.99511 * 21 19 17 24 24 H 1.48495 * 109.47283 * 149.99408 * 21 19 17 25 25 C 1.46709 * 109.37753 * 1.50548 * 16 15 13 26 26 C 1.46713 * 125.58905 * 179.97438 * 10 8 7 27 27 H 1.09004 * 111.52670 * 56.11938 * 26 10 8 28 28 C 1.35462 * 126.43993 * 85.29765 * 3 2 1 29 29 Cl 1.73602 * 127.23441 * 359.97438 * 28 3 2 30 30 H 1.08998 * 109.47051 * 59.99862 * 1 2 3 31 31 H 1.08995 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46813 * 300.00476 * 1 2 3 33 33 H 1.08999 * 109.47344 * 239.99364 * 2 1 3 34 34 H 1.09008 * 109.47215 * 119.99624 * 2 1 3 35 35 H 1.08997 * 110.37256 * 323.21866 * 11 10 8 36 36 H 1.09003 * 110.36974 * 85.54757 * 11 10 8 37 37 H 1.09006 * 110.97714 * 204.65751 * 12 11 10 38 38 H 1.09003 * 110.97170 * 80.88853 * 12 11 10 39 39 H 1.08993 * 109.74892 * 4.70400 * 15 13 12 40 40 H 1.09006 * 109.73170 * 244.03673 * 15 13 12 41 41 H 0.96998 * 119.99594 * 354.63643 * 20 19 17 42 42 H 1.08999 * 109.98264 * 101.17933 * 25 16 15 43 43 H 1.08993 * 109.98803 * 222.48976 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3910 2.1484 -1.0871 5 1 2.3639 1.8292 -2.0028 6 7 2.7728 3.3213 -0.7280 7 6 2.6934 3.4429 0.5823 8 6 3.0422 4.6387 1.3753 9 8 2.9237 4.6216 2.5851 10 7 3.4920 5.7491 0.7579 11 6 3.6817 5.9053 -0.6955 12 6 4.7470 7.0202 -0.8382 13 6 4.3576 7.9787 0.3182 14 1 5.1681 8.6314 0.6428 15 6 3.0911 8.7458 -0.0960 16 7 2.0704 8.5297 0.9337 17 6 0.7974 9.0337 0.9044 18 1 0.4114 9.4731 -0.0035 19 6 0.0033 8.9798 2.0416 20 7 -1.3078 8.9550 1.9282 21 14 0.7953 8.9424 3.7330 22 1 1.0356 7.5335 4.1361 23 1 2.0879 9.6724 3.6905 24 1 -0.1077 9.5917 4.7169 25 6 2.6273 7.6943 2.0035 26 6 3.8719 7.0008 1.4222 27 1 4.6391 6.8353 2.1787 28 6 2.2163 2.2092 1.0861 29 17 1.9243 1.7948 2.7465 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 4.0448 4.9753 -1.1329 36 1 2.7485 6.2095 -1.1694 37 1 4.6629 7.5191 -1.8037 38 1 5.7510 6.6214 -0.6931 39 1 2.7316 8.3727 -1.0549 40 1 3.3147 9.8098 -0.1752 41 1 -1.7210 9.0528 1.0562 42 1 2.9071 8.3159 2.8540 43 1 1.8958 6.9475 2.3120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075894168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:58 Heat of formation + Delta-G solvation = 72.605377 kcal Electronic energy + Delta-G solvation = -28170.172572 eV Core-core repulsion = 24279.005924 eV Total energy + Delta-G solvation = -3891.166648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.90812 -40.18392 -37.79972 -36.48543 -34.93762 -34.53432 -32.41472 -31.70559 -31.24367 -29.64303 -28.83594 -26.94870 -24.45567 -24.24360 -24.00259 -21.95729 -21.30451 -20.81025 -19.62510 -18.74985 -18.03638 -17.30506 -16.74578 -16.14012 -15.93933 -15.18974 -15.06863 -14.57803 -14.49229 -14.15713 -13.97518 -13.69128 -13.48011 -13.00121 -12.91652 -12.82993 -12.36668 -12.21130 -12.04774 -11.92016 -11.79415 -11.60694 -11.43591 -11.11229 -10.96050 -10.83729 -10.71842 -10.52027 -10.33543 -10.03139 -9.69940 -9.52637 -9.50542 -9.13853 -8.88524 -8.39374 -8.17014 -6.95645 -6.23314 -3.09619 1.43221 1.72984 1.98584 2.75992 3.21431 3.56574 3.61488 3.64552 3.78414 4.16493 4.36427 4.46829 4.69415 4.72362 4.79772 4.87740 5.03135 5.07100 5.13154 5.20991 5.23345 5.48629 5.49423 5.52986 5.64673 5.67116 5.72919 5.74472 5.88072 5.90751 5.99453 6.04126 6.21478 6.27412 6.42615 6.58934 6.63225 6.72905 6.78988 6.99634 7.53886 7.79413 7.87602 8.44501 8.46056 9.13288 9.71191 10.35928 11.24545 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.004399 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.866219 B = 6363.121946 C = 7277.839827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.054 4.054 3 C 0.030 3.970 4 N -0.378 5.378 5 H 0.449 0.551 6 N -0.241 5.241 7 C 0.020 3.980 8 C 0.610 3.390 9 O -0.514 6.514 10 N -0.588 5.588 11 C 0.105 3.895 12 C -0.124 4.124 13 C -0.110 4.110 14 H 0.101 0.899 15 C 0.141 3.859 16 N -0.602 5.602 17 C -0.331 4.331 18 H 0.074 0.926 19 C -0.014 4.014 20 N -0.918 5.918 21 Si 1.055 2.945 22 H -0.287 1.287 23 H -0.288 1.288 24 H -0.299 1.299 25 C 0.105 3.895 26 C 0.131 3.869 27 H 0.089 0.911 28 C -0.099 4.099 29 Cl -0.006 7.006 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.261 0.739 42 H 0.035 0.965 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.878 -18.486 -8.925 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.092 4.092 3 C -0.097 4.097 4 N -0.093 5.093 5 H 0.295 0.705 6 N -0.076 5.076 7 C -0.142 4.142 8 C 0.395 3.605 9 O -0.387 6.387 10 N -0.321 5.321 11 C -0.017 4.017 12 C -0.162 4.162 13 C -0.129 4.129 14 H 0.120 0.880 15 C 0.016 3.984 16 N -0.330 5.330 17 C -0.458 4.458 18 H 0.092 0.908 19 C -0.215 4.215 20 N -0.559 5.559 21 Si 0.887 3.113 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.227 1.227 25 C -0.021 4.021 26 C 0.028 3.972 27 H 0.107 0.893 28 C -0.137 4.137 29 Cl 0.023 6.977 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.627 -18.059 -7.403 22.718 hybrid contribution -0.013 -0.332 -1.459 1.496 sum 11.614 -18.390 -8.861 23.486 Atomic orbital electron populations 1.21783 0.93501 1.02495 1.03117 1.20166 0.96920 0.87894 1.04263 1.21153 1.05323 0.96888 0.86335 1.43254 1.47807 1.08712 1.09539 0.70518 1.73773 1.17920 1.01961 1.13961 1.21857 1.07061 0.95811 0.89501 1.16323 0.77862 0.80262 0.86033 1.90855 1.53025 1.82308 1.12515 1.48027 1.63916 1.11791 1.08368 1.22455 0.99146 0.99183 0.80959 1.22825 0.98355 0.96097 0.98959 1.23110 0.98878 0.96181 0.94743 0.88048 1.21213 0.87301 0.96654 0.93277 1.44461 1.10380 1.57331 1.20780 1.19931 0.87171 1.40280 0.98386 0.90834 1.25784 0.95077 0.98690 1.01964 1.70925 1.09091 1.48651 1.27213 0.83964 0.74040 0.76905 0.76366 1.21389 1.21492 1.22693 1.21910 0.94124 0.93864 0.92232 1.22313 0.97241 0.82623 0.95062 0.89308 1.20476 1.10683 0.94303 0.88217 1.98362 1.94543 1.92667 1.12129 0.92480 0.91453 0.91540 0.90199 0.88759 0.89473 0.90979 0.89826 0.91009 0.95221 0.95570 0.92859 0.94821 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.05 -0.36 6.36 -27.88 -0.18 -0.54 16 3 C 0.03 0.31 6.51 -81.90 -0.53 -0.22 16 4 N -0.38 -3.68 6.86 33.62 0.23 -3.45 16 5 H 0.45 2.39 8.96 -190.43 -1.71 0.69 16 6 N -0.24 -3.28 9.32 33.42 0.31 -2.97 16 7 C 0.02 0.33 6.96 -82.76 -0.58 -0.24 16 8 C 0.61 12.10 7.49 -12.41 -0.09 12.00 16 9 O -0.51 -11.62 15.60 5.30 0.08 -11.54 16 10 N -0.59 -10.86 3.02 -163.36 -0.49 -11.35 16 11 C 0.11 1.60 5.70 -2.57 -0.01 1.58 16 12 C -0.12 -1.57 6.30 -24.60 -0.16 -1.73 16 13 C -0.11 -1.75 4.25 -87.88 -0.37 -2.12 16 14 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.14 2.85 6.41 -3.60 -0.02 2.83 16 16 N -0.60 -15.43 3.26 -172.00 -0.56 -15.99 16 17 C -0.33 -9.86 10.40 -15.06 -0.16 -10.02 16 18 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 19 C -0.01 -0.44 5.41 -17.43 -0.09 -0.54 16 20 N -0.92 -29.99 13.70 55.49 0.76 -29.23 16 21 Si 1.06 28.78 24.65 -169.99 -4.19 24.59 16 22 H -0.29 -7.83 6.72 56.52 0.38 -7.45 16 23 H -0.29 -7.37 6.33 56.52 0.36 -7.01 16 24 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 25 C 0.10 2.53 4.34 -3.47 -0.02 2.51 16 26 C 0.13 2.49 3.65 -66.15 -0.24 2.25 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 C -0.10 -1.46 6.79 -39.31 -0.27 -1.73 16 29 Cl -0.01 -0.08 28.02 -51.86 -1.45 -1.54 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.09 1.16 6.17 -51.93 -0.32 0.84 16 36 H 0.07 1.24 7.49 -51.93 -0.39 0.85 16 37 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.60 6.78 -51.93 -0.35 0.24 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 8.40 8.73 -40.82 -0.36 8.04 16 42 H 0.03 0.84 5.03 -51.93 -0.26 0.58 16 43 H 0.06 1.78 5.86 -51.93 -0.30 1.48 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -37.63 353.36 -9.53 -47.16 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -7.19 Total: -4.35 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.35 Total: 3.34 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.25 Total: -63.00 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 28.78 SS G_CDS: -4.19 Total: 24.59 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.45 Total: -1.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.63 -9.53 -47.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075894168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.762 kcal (2) G-P(sol) polarization free energy of solvation -37.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds