Wall clock time and date at job start Tue Mar 31 2020 22:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34946 * 126.02258 * 2 1 4 4 C 1.35316 * 107.76266 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.04174 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47070 * 99.99869 * 5 4 3 7 7 O 1.21281 * 119.99825 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99515 * 179.97438 * 6 5 4 9 9 C 1.47405 * 125.59581 * 359.97438 * 8 6 5 10 10 C 1.54852 * 104.81870 * 204.43803 * 9 8 6 11 11 C 1.55171 * 101.73380 * 322.76386 * 10 9 8 12 12 H 1.09000 * 113.26071 * 158.95911 * 11 10 9 13 13 C 1.53752 * 108.30951 * 285.39105 * 11 10 9 14 14 N 1.46593 * 108.11037 * 124.37533 * 13 11 10 15 15 C 1.36931 * 125.31110 * 181.28598 * 14 13 11 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99680 * 179.72091 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.46715 * 109.37493 * 1.54608 * 14 13 11 24 24 C 1.46711 * 125.58562 * 180.02562 * 8 6 5 25 25 H 1.09000 * 111.53310 * 56.06193 * 24 8 6 26 26 C 1.39972 * 107.90793 * 0.23661 * 4 3 2 27 27 Cl 1.73600 * 125.91056 * 179.75731 * 26 4 3 28 28 N 1.30895 * 108.17418 * 359.59642 * 26 4 3 29 29 H 1.08993 * 109.47209 * 90.00733 * 1 2 3 30 30 H 1.09002 * 109.46910 * 210.00451 * 1 2 3 31 31 H 1.09004 * 109.47329 * 329.99841 * 1 2 3 32 32 H 1.08001 * 126.12119 * 359.97438 * 3 2 1 33 33 H 1.08990 * 109.47409 * 339.99458 * 5 4 3 34 34 H 1.09004 * 109.46725 * 219.99202 * 5 4 3 35 35 H 1.08998 * 110.37308 * 85.59387 * 9 8 6 36 36 H 1.09008 * 110.45611 * 323.32028 * 9 8 6 37 37 H 1.09002 * 110.97601 * 204.65388 * 10 9 8 38 38 H 1.09001 * 111.01438 * 80.89346 * 10 9 8 39 39 H 1.09000 * 109.74650 * 4.70244 * 13 11 10 40 40 H 1.09004 * 109.74396 * 244.04559 * 13 11 10 41 41 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.98490 * 101.14040 * 23 14 13 43 43 H 1.09001 * 109.98849 * 222.45203 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2586 1.0914 0.0000 4 6 3.5436 0.6674 0.0006 5 6 4.7675 1.5468 0.0002 6 6 5.3190 1.6405 1.3996 7 8 4.7719 1.0517 2.3077 8 7 6.4203 2.3788 1.6417 9 6 7.1805 3.1412 0.6349 10 6 8.6069 3.2639 1.2250 11 6 8.3082 3.4523 2.7360 12 1 9.1533 3.2003 3.3766 13 6 7.7908 4.8841 2.9513 14 7 6.4878 4.8023 3.6178 15 6 5.7021 5.8723 3.9538 16 1 6.0307 6.8759 3.7273 17 6 4.4803 5.6668 4.5798 18 7 4.0795 4.4437 4.8552 19 14 3.4049 7.1260 5.0312 20 1 3.0555 7.8824 3.8020 21 1 2.1627 6.6419 5.6850 22 1 4.1421 8.0138 5.9659 23 6 6.1597 3.3955 3.8743 24 6 7.0597 2.5544 2.9504 25 1 7.3250 1.5966 3.3978 26 6 3.5350 -0.7322 -0.0046 27 17 4.9348 -1.7590 -0.0120 28 7 2.2889 -1.1329 0.0007 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.9274 2.1194 -0.0004 33 1 4.4992 2.5427 -0.3520 34 1 5.5221 1.1189 -0.6598 35 1 6.7412 4.1290 0.4956 36 1 7.2067 2.6016 -0.3119 37 1 9.1241 4.1330 0.8182 38 1 9.1814 2.3540 1.0513 39 1 7.6816 5.3847 1.9892 40 1 8.4904 5.4382 3.5771 41 1 3.2259 4.3001 5.2930 42 1 6.3595 3.1506 4.9175 43 1 5.1112 3.2091 3.6417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076236823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:44 Heat of formation + Delta-G solvation = 82.425628 kcal Electronic energy + Delta-G solvation = -27909.343192 eV Core-core repulsion = 24018.602382 eV Total energy + Delta-G solvation = -3890.740810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32501 -39.93244 -37.62249 -36.66517 -34.64264 -33.50407 -32.23348 -31.63188 -30.73358 -29.05881 -28.07896 -26.40008 -25.51996 -24.60510 -22.44436 -21.27514 -21.05141 -20.28660 -19.44066 -18.33388 -17.00219 -16.90383 -16.48681 -15.80218 -15.41045 -15.04084 -14.98160 -14.48336 -14.17537 -13.76362 -13.61438 -13.39651 -13.24831 -13.04152 -12.73582 -12.64200 -12.32748 -12.01089 -11.86179 -11.63603 -11.61110 -11.47669 -11.37957 -11.05061 -10.97906 -10.70132 -10.48143 -10.43702 -10.24263 -10.10993 -9.74346 -9.61980 -9.29778 -9.16111 -8.57461 -8.38023 -7.94232 -6.75218 -5.58722 -3.00194 1.52918 1.75820 2.51611 2.87969 3.30225 3.40867 3.45361 3.47384 3.64878 4.45904 4.51551 4.77192 4.82659 4.90050 4.97947 5.08083 5.18061 5.24349 5.29575 5.39861 5.52435 5.54196 5.60831 5.66872 5.71006 5.82539 5.86861 5.95642 5.97746 6.10046 6.22854 6.33748 6.42817 6.61352 6.67132 6.74696 6.85879 6.96210 7.44734 7.56213 7.70312 8.01527 8.19176 8.46448 8.86640 9.28388 9.90158 10.53449 11.45030 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.004306 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.022980 B = 6500.968816 C = 8408.247480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.365 5.365 3 C 0.082 3.918 4 C -0.199 4.199 5 C -0.058 4.058 6 C 0.529 3.471 7 O -0.521 6.521 8 N -0.601 5.601 9 C 0.103 3.897 10 C -0.124 4.124 11 C -0.111 4.111 12 H 0.094 0.906 13 C 0.143 3.857 14 N -0.599 5.599 15 C -0.230 4.230 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.913 5.913 19 Si 0.910 3.090 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.156 3.844 24 C 0.117 3.883 25 H 0.075 0.925 26 C 0.144 3.856 27 Cl 0.002 6.998 28 N -0.287 5.287 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.183 0.817 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.019 0.981 41 H 0.252 0.748 42 H 0.018 0.982 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -7.239 -14.798 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.148 5.148 3 C -0.064 4.064 4 C -0.211 4.211 5 C -0.099 4.099 6 C 0.317 3.683 7 O -0.397 6.397 8 N -0.336 5.336 9 C -0.021 4.021 10 C -0.162 4.162 11 C -0.130 4.130 12 H 0.112 0.888 13 C 0.017 3.983 14 N -0.326 5.326 15 C -0.358 4.358 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.560 5.560 19 Si 0.740 3.260 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.030 3.970 24 C 0.013 3.987 25 H 0.093 0.907 26 C -0.048 4.048 27 Cl 0.030 6.970 28 N -0.113 5.113 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.200 0.800 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.510 -8.668 -14.209 16.652 hybrid contribution 0.097 1.494 0.388 1.547 sum -0.413 -7.174 -13.821 15.577 Atomic orbital electron populations 1.21923 0.73346 1.05026 1.03389 1.48122 1.06501 1.03056 1.57113 1.22342 0.89853 0.93784 1.00424 1.19207 0.94395 0.91395 1.16092 1.19895 0.94491 0.99955 0.95574 1.19974 0.79182 0.78650 0.90531 1.90731 1.57653 1.45155 1.46111 1.48241 1.27521 1.48407 1.09449 1.22260 0.91665 0.96616 0.91518 1.22789 0.95839 1.01911 0.95691 1.23050 0.97173 0.97042 0.95779 0.88777 1.21165 0.88677 0.92747 0.95738 1.44181 1.16694 1.02748 1.68935 1.18948 0.98144 0.85969 1.32749 0.90663 1.24816 0.97981 0.96518 1.01035 1.69917 1.21619 1.17895 1.46574 0.86237 0.80040 0.81571 0.78106 1.21278 1.21668 1.21221 1.21728 1.00176 0.81635 0.93433 1.22600 0.93078 0.98063 0.85007 0.90668 1.22385 0.88939 0.90538 1.02928 1.98371 1.34474 1.67284 1.96915 1.77278 0.99904 1.08289 1.25782 0.90566 0.89106 0.88918 0.79989 0.88234 0.88620 0.91130 0.91399 0.90186 0.91187 0.95802 0.96361 0.93713 0.96369 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 11.47 59.85 0.69 1.53 16 2 N -0.36 -4.84 4.01 -68.16 -0.27 -5.12 16 3 C 0.08 1.11 11.40 -17.22 -0.20 0.91 16 4 C -0.20 -3.03 4.60 -105.01 -0.48 -3.51 16 5 C -0.06 -0.83 5.04 -29.03 -0.15 -0.97 16 6 C 0.53 10.00 7.48 -10.98 -0.08 9.92 16 7 O -0.52 -12.21 15.76 5.56 0.09 -12.12 16 8 N -0.60 -10.81 3.02 -162.14 -0.49 -11.30 16 9 C 0.10 1.42 6.23 -2.57 -0.02 1.41 16 10 C -0.12 -1.56 6.30 -24.61 -0.16 -1.71 16 11 C -0.11 -1.83 4.25 -87.88 -0.37 -2.20 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.14 2.86 6.41 -3.60 -0.02 2.84 16 14 N -0.60 -15.32 3.38 -171.92 -0.58 -15.90 16 15 C -0.23 -6.41 10.25 -15.06 -0.15 -6.57 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 18 N -0.91 -27.59 10.16 55.49 0.56 -27.03 16 19 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 C 0.16 3.97 5.21 -3.41 -0.02 3.95 16 24 C 0.12 2.32 3.66 -66.10 -0.24 2.08 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 C 0.14 2.31 7.84 -17.30 -0.14 2.17 16 27 Cl 0.00 0.03 29.16 -51.86 -1.51 -1.49 16 28 N -0.29 -4.60 12.58 32.94 0.41 -4.18 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.13 7.84 -51.93 -0.41 0.72 16 35 H 0.07 1.06 7.49 -51.93 -0.39 0.67 16 36 H 0.07 0.72 7.46 -51.92 -0.39 0.34 16 37 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.46 6.78 -51.93 -0.35 0.11 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.11 3.15 5.30 -51.93 -0.28 2.88 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -36.70 364.84 -8.75 -45.44 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.00 Total: -0.55 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -1.43 Total: 9.55 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.36 Total: -63.53 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.51 Total: -1.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.70 -8.75 -45.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076236823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.870 kcal (2) G-P(sol) polarization free energy of solvation -36.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds