Wall clock time and date at job start Tue Mar 31 2020 21:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63983 * 2 1 4 4 C 1.54337 * 110.99773 * 236.92188 * 2 1 3 5 5 N 1.47020 * 107.26210 * 219.60002 * 4 2 1 6 6 C 1.36945 * 125.64525 * 178.85184 * 5 4 2 7 7 H 1.07997 * 119.99756 * 359.71717 * 6 5 4 8 8 C 1.38805 * 119.99878 * 179.71622 * 6 5 4 9 9 N 1.31624 * 120.00257 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47187 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 300.00154 * 10 8 6 13 13 H 1.48498 * 109.47018 * 60.00200 * 10 8 6 14 14 C 1.47420 * 108.70626 * 358.58837 * 5 4 2 15 15 C 1.54914 * 104.83159 * 24.35323 * 14 5 4 16 16 H 1.08999 * 110.99936 * 81.10677 * 15 14 5 17 17 N 1.46492 * 111.00284 * 204.91262 * 15 14 5 18 18 C 1.34779 * 120.00542 * 273.54715 * 17 15 14 19 19 O 1.21601 * 119.99409 * 0.02562 * 18 17 15 20 20 C 1.47387 * 120.00007 * 180.02562 * 18 17 15 21 21 C 1.41390 * 126.42404 * 270.02389 * 20 18 17 22 22 Cl 1.73601 * 126.00260 * 359.97438 * 21 20 18 23 23 N 1.30528 * 107.99045 * 179.97438 * 21 20 18 24 24 N 1.39932 * 108.89216 * 0.02562 * 23 21 20 25 25 H 0.97005 * 125.73473 * 180.02562 * 24 23 21 26 26 C 1.34234 * 108.52735 * 359.74935 * 24 23 21 27 27 C 1.50699 * 126.28406 * 180.24261 * 26 24 23 28 28 C 1.53000 * 117.49825 * 8.80178 * 27 26 24 29 29 C 1.52998 * 60.00186 * 252.51188 * 28 27 26 30 30 H 1.09000 * 109.47012 * 296.85820 * 1 2 3 31 31 H 1.09000 * 109.47235 * 56.85241 * 1 2 3 32 32 H 1.08999 * 109.47449 * 176.86112 * 1 2 3 33 33 H 1.09001 * 109.98748 * 100.12718 * 4 2 1 34 34 H 1.09001 * 109.78230 * 338.96187 * 4 2 1 35 35 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 36 36 H 1.08999 * 110.36700 * 143.19620 * 14 5 4 37 37 H 1.08999 * 110.36672 * 265.51958 * 14 5 4 38 38 H 0.97002 * 119.99551 * 93.55061 * 17 15 14 39 39 H 1.09002 * 115.54872 * 154.51131 * 27 26 24 40 40 H 1.09001 * 117.50125 * 0.02562 * 28 27 26 41 41 H 1.09000 * 117.49901 * 145.01622 * 28 27 26 42 42 H 1.09002 * 117.50014 * 252.51294 * 29 28 27 43 43 H 1.08993 * 117.49781 * 107.48764 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2074 5 7 3.2493 -1.5470 -0.7354 6 6 4.0124 -2.3919 -1.4965 7 1 3.7712 -2.5469 -2.5378 8 6 5.0957 -3.0490 -0.9298 9 7 5.3894 -2.8604 0.3394 10 14 6.1362 -4.2020 -1.9678 11 1 7.2238 -4.7734 -1.1338 12 1 5.2849 -5.2999 -2.4922 13 1 6.7273 -3.4487 -3.1028 14 6 3.4652 -1.2447 0.6912 15 6 2.0789 -0.7934 1.2151 16 1 1.4472 -1.6529 1.4390 17 7 2.2176 0.0726 2.3885 18 6 2.3114 -0.4695 3.6189 19 8 2.2814 -1.6775 3.7549 20 6 2.4503 0.4019 4.7994 21 6 3.6617 0.8589 5.3677 22 17 5.2593 0.4912 4.7968 23 7 3.3676 1.6057 6.3970 24 7 1.9761 1.6606 6.5342 25 1 1.4932 2.1487 7.2195 26 6 1.4217 0.9292 5.5547 27 6 -0.0526 0.7195 5.3235 28 6 -1.0245 1.5584 6.1558 29 6 -0.8580 0.0658 6.4482 30 1 -0.3633 0.4643 0.9168 31 1 -0.3634 0.5619 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 2.3847 -0.0961 -1.9951 34 1 1.3215 -1.4701 -1.5824 35 1 6.1463 -3.3199 0.7355 36 1 3.7993 -2.1364 1.2216 37 1 4.1929 -0.4410 0.8028 38 1 2.2418 1.0362 2.2799 39 1 -0.3392 0.4863 4.2980 40 1 -0.5975 2.2622 6.8702 41 1 -1.9507 1.8774 5.6778 42 1 -1.6748 -0.5971 6.1626 43 1 -0.3215 -0.2125 7.3552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079833234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:34 Heat of formation + Delta-G solvation = 86.682083 kcal Electronic energy + Delta-G solvation = -27413.568386 eV Core-core repulsion = 23523.012150 eV Total energy + Delta-G solvation = -3890.556236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77279 -39.14031 -37.58320 -37.31494 -36.67413 -33.80384 -32.59340 -31.57387 -30.68500 -30.30733 -27.63636 -25.61230 -24.52912 -23.59373 -22.94237 -22.25932 -21.53205 -20.19356 -19.98299 -19.24969 -18.00731 -16.85833 -16.43327 -16.14755 -15.85259 -15.34097 -15.20765 -14.80292 -14.43717 -14.01826 -13.67162 -13.65013 -12.93686 -12.83966 -12.69671 -12.42537 -12.30225 -12.15159 -12.07373 -11.71368 -11.67194 -11.26620 -11.18518 -11.10687 -11.03135 -10.73607 -10.70705 -10.56196 -10.34294 -9.94724 -9.72886 -9.67434 -9.56234 -9.50358 -8.82612 -8.57258 -8.38208 -6.76132 -5.54819 -2.99140 1.26202 1.42498 2.06154 2.65626 2.93369 3.34073 3.46667 3.50354 3.52771 3.66476 3.95423 4.24717 4.42078 4.56078 4.64600 4.75229 5.06579 5.09158 5.21691 5.33017 5.34237 5.39255 5.47564 5.53434 5.60188 5.62320 5.76409 5.80675 5.98771 6.08803 6.18152 6.28369 6.40584 6.54467 6.70962 6.72058 6.86589 7.01167 7.08471 7.56045 7.68768 7.92855 8.02927 8.47079 8.67260 9.29382 9.90719 10.53941 11.47368 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003702 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.847687 B = 7561.821454 C = 8999.872813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.915 5.915 10 Si 0.913 3.087 11 H -0.290 1.290 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.149 3.851 15 C 0.121 3.879 16 H 0.090 0.910 17 N -0.704 5.704 18 C 0.593 3.407 19 O -0.518 6.518 20 C -0.252 4.252 21 C 0.159 3.841 22 Cl 0.034 6.966 23 N -0.277 5.277 24 N -0.451 5.451 25 H 0.444 0.556 26 C 0.169 3.831 27 C -0.104 4.104 28 C -0.171 4.171 29 C -0.156 4.156 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.027 0.973 35 H 0.253 0.747 36 H 0.113 0.887 37 H 0.014 0.986 38 H 0.394 0.606 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 12.988 12.766 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.016 3.984 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.562 5.562 10 Si 0.744 3.256 11 H -0.216 1.216 12 H -0.211 1.211 13 H -0.213 1.213 14 C 0.023 3.977 15 C 0.016 3.984 16 H 0.108 0.892 17 N -0.353 5.353 18 C 0.376 3.624 19 O -0.392 6.392 20 C -0.267 4.267 21 C -0.033 4.033 22 Cl 0.062 6.938 23 N -0.103 5.103 24 N -0.160 5.160 25 H 0.290 0.710 26 C 0.037 3.963 27 C -0.124 4.124 28 C -0.209 4.209 29 C -0.194 4.194 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.032 0.968 38 H 0.227 0.773 39 H 0.155 0.845 40 H 0.111 0.889 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.779 12.599 13.740 22.601 hybrid contribution 0.379 -0.188 -0.894 0.989 sum -12.399 12.411 12.846 21.744 Atomic orbital electron populations 1.21734 0.95022 1.01856 1.00781 1.22423 0.95114 0.99246 0.96318 0.90848 1.21323 0.90341 0.93145 0.93627 1.44387 1.30928 1.50422 1.07191 1.18990 1.06296 1.17544 0.92880 0.90486 1.24808 0.98718 1.00502 0.96346 1.69800 1.29870 1.45891 1.10664 0.86183 0.79849 0.80686 0.78923 1.21585 1.21147 1.21298 1.22236 0.89272 1.01285 0.84884 1.22704 1.01205 0.92193 0.82328 0.89177 1.45853 1.73758 1.09927 1.05808 1.16993 0.76716 0.86901 0.81808 1.90835 1.48451 1.14083 1.85864 1.19869 0.90551 1.11703 1.04621 1.22697 0.89189 0.97037 0.94387 1.98473 1.17048 1.92312 1.85968 1.77176 0.90343 1.23206 1.19526 1.45747 1.04179 1.40658 1.25395 0.71019 1.20324 0.93719 0.92912 0.89344 1.20705 0.84771 1.07271 0.99631 1.23064 1.01010 0.94306 1.02496 1.23111 1.02056 0.95497 0.98736 0.93178 0.92924 0.92455 0.95979 0.95559 0.93608 0.86890 0.96825 0.77252 0.84483 0.88896 0.87117 0.87093 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.17 37.16 0.34 -1.43 16 2 C -0.11 -1.84 3.15 -88.78 -0.28 -2.12 16 3 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 4 C 0.14 2.92 6.85 -3.06 -0.02 2.90 16 5 N -0.60 -15.68 3.39 -170.07 -0.58 -16.26 16 6 C -0.23 -6.50 10.27 -15.06 -0.15 -6.65 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 9 N -0.91 -27.67 10.09 55.49 0.56 -27.11 16 10 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.15 3.74 5.58 -2.53 -0.01 3.73 16 15 C 0.12 2.33 2.76 -65.79 -0.18 2.15 16 16 H 0.09 1.90 7.64 -51.93 -0.40 1.50 16 17 N -0.70 -11.49 5.23 -52.82 -0.28 -11.77 16 18 C 0.59 10.55 7.31 -12.54 -0.09 10.46 16 19 O -0.52 -11.56 16.85 5.28 0.09 -11.47 16 20 C -0.25 -3.76 5.88 -105.04 -0.62 -4.38 16 21 C 0.16 2.43 7.89 -16.91 -0.13 2.30 16 22 Cl 0.03 0.55 29.19 -51.86 -1.51 -0.96 16 23 N -0.28 -3.72 12.64 33.18 0.42 -3.30 16 24 N -0.45 -4.44 7.17 33.86 0.24 -4.19 16 25 H 0.44 2.65 7.95 -182.72 -1.45 1.19 16 26 C 0.17 1.88 6.80 -81.60 -0.55 1.32 16 27 C -0.10 -0.86 6.02 -91.77 -0.55 -1.42 16 28 C -0.17 -0.86 10.14 -26.73 -0.27 -1.13 16 29 C -0.16 -1.03 10.23 -26.73 -0.27 -1.31 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.03 0.54 7.78 -51.93 -0.40 0.13 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.11 3.35 5.87 -51.93 -0.31 3.04 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.39 5.34 8.50 -40.82 -0.35 4.99 16 39 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 0.33 7.16 -51.93 -0.37 -0.04 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -35.01 375.24 -10.37 -45.38 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.04 Total: 2.33 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.90 Total: 4.11 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.37 Total: -62.63 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -1.51 Total: -0.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.01 -10.37 -45.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079833234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.061 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds