Wall clock time and date at job start Tue Mar 31 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.64161 * 2 1 4 4 C 1.54325 * 110.72360 * 236.66308 * 2 1 3 5 5 N 1.47019 * 107.27454 * 219.44345 * 4 2 1 6 6 C 1.36933 * 125.64881 * 178.97342 * 5 4 2 7 7 H 1.07998 * 120.00260 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99957 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00139 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00242 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46476 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47148 * 119.99743 * 10 8 6 13 13 H 1.48496 * 109.46808 * 239.99904 * 10 8 6 14 14 C 1.47469 * 108.72017 * 358.97385 * 5 4 2 15 15 C 1.54914 * 104.81081 * 24.07277 * 14 5 4 16 16 H 1.08991 * 111.00370 * 81.13457 * 15 14 5 17 17 N 1.46505 * 111.00244 * 204.94943 * 15 14 5 18 18 C 1.34773 * 120.00095 * 270.41889 * 17 15 14 19 19 O 1.21583 * 119.99900 * 359.97438 * 18 17 15 20 20 C 1.47660 * 120.00226 * 179.72288 * 18 17 15 21 21 N 1.31828 * 126.45927 * 359.96747 * 20 18 17 22 22 N 1.28475 * 110.13156 * 179.81659 * 21 20 18 23 23 H 0.97002 * 124.93039 * 180.20458 * 22 21 20 24 24 C 1.35631 * 110.13334 * 0.44992 * 22 21 20 25 25 C 1.50705 * 126.43364 * 179.76090 * 24 22 21 26 26 C 1.52999 * 117.49794 * 8.58149 * 25 24 22 27 27 C 1.52999 * 60.00101 * 252.51074 * 26 25 24 28 28 C 1.35465 * 107.13591 * 359.73240 * 24 22 21 29 29 Cl 1.73598 * 127.24036 * 180.02562 * 28 24 22 30 30 H 1.08996 * 109.47215 * 296.85993 * 1 2 3 31 31 H 1.08995 * 109.47006 * 56.86297 * 1 2 3 32 32 H 1.09003 * 109.46730 * 176.85870 * 1 2 3 33 33 H 1.09004 * 109.87864 * 338.86459 * 4 2 1 34 34 H 1.09007 * 109.88313 * 100.02247 * 4 2 1 35 35 H 0.97000 * 120.00538 * 180.02562 * 9 8 6 36 36 H 1.08998 * 110.35117 * 265.25083 * 14 5 4 37 37 H 1.09000 * 110.40237 * 142.91666 * 14 5 4 38 38 H 0.97000 * 119.99792 * 90.41454 * 17 15 14 39 39 H 1.09000 * 115.55057 * 154.29583 * 25 24 22 40 40 H 1.08996 * 117.49585 * 0.02562 * 26 25 24 41 41 H 1.09001 * 117.49752 * 145.01688 * 26 25 24 42 42 H 1.09002 * 117.50219 * 252.51071 * 27 26 25 43 43 H 1.08999 * 117.49727 * 107.48870 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0761 -0.7932 -1.2059 5 7 3.2446 -1.5520 -0.7364 6 6 4.0044 -2.3995 -1.4977 7 1 3.7612 -2.5552 -2.5383 8 6 5.0865 -3.0592 -0.9316 9 7 5.3827 -2.8699 0.3368 10 14 6.1235 -4.2149 -1.9703 11 1 5.5861 -4.2531 -3.3541 12 1 7.5273 -3.7314 -1.9970 13 1 6.0808 -5.5790 -1.3852 14 6 3.4633 -1.2494 0.6903 15 6 2.0789 -0.7934 1.2151 16 1 1.4449 -1.6507 1.4407 17 7 2.2214 0.0737 2.3874 18 6 2.2516 -0.4633 3.6231 19 8 2.1602 -1.6674 3.7651 20 6 2.4014 0.4101 4.8043 21 7 2.5160 1.7233 4.7980 22 7 2.6252 2.1634 6.0001 23 1 2.7185 3.0978 6.2431 24 6 2.5966 1.1313 6.8795 25 6 2.7018 1.2303 8.3796 26 6 2.6542 2.6280 9.0003 27 6 3.9733 1.8539 8.9589 28 6 2.4549 -0.0054 6.1564 29 17 2.3584 -1.6299 6.7608 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5617 -0.8605 32 1 -0.3633 -1.0262 -0.0563 33 1 1.3130 -1.4785 -1.5751 34 1 2.3742 -0.1058 -1.9976 35 1 6.1391 -3.3306 0.7324 36 1 4.1936 -0.4477 0.8002 37 1 3.7953 -2.1415 1.2214 38 1 2.2940 1.0343 2.2741 39 1 2.2415 0.4153 8.9381 40 1 2.5463 3.4757 8.3237 41 1 2.1622 2.7327 9.9673 42 1 4.3492 1.4493 9.8987 43 1 4.7336 2.1924 8.2550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080042607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:30 Heat of formation + Delta-G solvation = 86.833159 kcal Electronic energy + Delta-G solvation = -26849.894729 eV Core-core repulsion = 22959.345043 eV Total energy + Delta-G solvation = -3890.549685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.97141 -39.24217 -37.69189 -37.31650 -36.43645 -33.83703 -32.64461 -31.79491 -30.72801 -30.28693 -27.77005 -25.60559 -24.57767 -23.82845 -23.01148 -22.74964 -21.32520 -20.29451 -19.96870 -19.20088 -18.19115 -16.88924 -16.75338 -16.27174 -15.94540 -15.65422 -14.92843 -14.79228 -14.35219 -14.02775 -13.95679 -13.63063 -12.99145 -12.81940 -12.78243 -12.42587 -12.18437 -12.14054 -12.08818 -11.65136 -11.57814 -11.38128 -11.15784 -11.05460 -11.02588 -10.74712 -10.64371 -10.55573 -10.29209 -9.89906 -9.73627 -9.68139 -9.56300 -9.48341 -8.82420 -8.58129 -8.35159 -6.76099 -5.55485 -2.99380 1.35728 1.68651 1.95393 2.73626 3.32461 3.41879 3.46376 3.50870 3.54034 3.65269 3.98550 4.19914 4.36047 4.44683 4.56266 4.58831 5.03360 5.05293 5.20022 5.25060 5.35883 5.38511 5.48631 5.52217 5.57331 5.60635 5.77469 5.83251 6.03523 6.11662 6.23182 6.31853 6.44788 6.56212 6.58010 6.72993 6.87062 7.02851 7.44810 7.58280 7.69794 7.93816 8.03770 8.45746 8.63482 9.29015 9.90398 10.53861 11.47157 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.002952 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.273543 B = 9482.359532 C =10430.928971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.225 4.225 7 H 0.079 0.921 8 C -0.010 4.010 9 N -0.916 5.916 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.149 3.851 15 C 0.120 3.880 16 H 0.094 0.906 17 N -0.698 5.698 18 C 0.594 3.406 19 O -0.508 6.508 20 C 0.018 3.982 21 N -0.243 5.243 22 N -0.377 5.377 23 H 0.448 0.552 24 C 0.057 3.943 25 C -0.089 4.089 26 C -0.175 4.175 27 C -0.163 4.163 28 C -0.093 4.093 29 Cl -0.003 7.003 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.252 0.748 36 H 0.013 0.987 37 H 0.113 0.887 38 H 0.399 0.601 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 14.429 17.995 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.016 3.984 5 N -0.330 5.330 6 C -0.354 4.354 7 H 0.097 0.903 8 C -0.206 4.206 9 N -0.564 5.564 10 Si 0.744 3.256 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.023 3.977 15 C 0.016 3.984 16 H 0.112 0.888 17 N -0.349 5.349 18 C 0.376 3.624 19 O -0.380 6.380 20 C -0.145 4.145 21 N -0.079 5.079 22 N -0.093 5.093 23 H 0.293 0.707 24 C -0.070 4.070 25 C -0.109 4.109 26 C -0.212 4.212 27 C -0.200 4.200 28 C -0.131 4.131 29 Cl 0.026 6.974 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.131 0.869 38 H 0.233 0.767 39 H 0.153 0.847 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.970 14.110 17.366 23.753 hybrid contribution 0.721 -0.200 0.118 0.757 sum -7.249 13.910 17.484 23.489 Atomic orbital electron populations 1.21744 0.94967 1.01900 1.00873 1.22428 0.95234 0.99200 0.96209 0.90792 1.21336 0.90282 0.93142 0.93681 1.44412 1.30863 1.50427 1.07269 1.19095 1.06251 1.17075 0.92936 0.90322 1.24826 0.98824 1.00582 0.96381 1.69819 1.29867 1.45930 1.10790 0.86012 0.79993 0.80527 0.79031 1.20552 1.21835 1.21709 1.22246 0.89271 1.01184 0.84995 1.22748 1.01195 0.92269 0.82237 0.88834 1.45695 1.73209 1.10723 1.05243 1.16699 0.77808 0.86506 0.81377 1.90878 1.48766 1.13123 1.85238 1.22100 1.08288 0.89801 0.94332 1.73676 1.18659 1.11925 1.03604 1.43095 1.53841 1.09654 1.02687 0.70676 1.20086 1.07487 0.87090 0.92297 1.20506 1.04384 0.98947 0.87081 1.23037 1.01570 0.93532 1.03072 1.23124 0.90933 1.02714 1.03269 1.20416 1.12570 0.88230 0.91845 1.98368 1.96735 1.15641 1.86681 0.93092 0.92912 0.92424 0.95447 0.95910 0.93726 0.96865 0.86930 0.76654 0.84700 0.89023 0.87331 0.87352 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.16 37.16 0.34 -1.62 16 2 C -0.11 -1.94 3.19 -88.78 -0.28 -2.22 16 3 H 0.07 1.19 7.99 -51.93 -0.42 0.78 16 4 C 0.14 3.00 6.84 -3.06 -0.02 2.98 16 5 N -0.60 -15.96 3.40 -170.03 -0.58 -16.54 16 6 C -0.23 -6.46 10.27 -15.06 -0.15 -6.62 16 7 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -27.98 10.09 55.49 0.56 -27.42 16 10 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 C 0.15 3.82 5.58 -2.50 -0.01 3.80 16 15 C 0.12 2.44 2.82 -65.78 -0.19 2.26 16 16 H 0.09 2.06 7.54 -51.93 -0.39 1.67 16 17 N -0.70 -12.33 5.21 -52.73 -0.27 -12.61 16 18 C 0.59 11.21 7.82 -12.42 -0.10 11.11 16 19 O -0.51 -11.32 15.57 5.29 0.08 -11.24 16 20 C 0.02 0.28 7.13 -82.76 -0.59 -0.31 16 21 N -0.24 -3.15 11.92 33.42 0.40 -2.75 16 22 N -0.38 -3.54 6.76 33.62 0.23 -3.31 16 23 H 0.45 2.41 7.94 -190.43 -1.51 0.90 16 24 C 0.06 0.59 6.75 -81.90 -0.55 0.04 16 25 C -0.09 -0.63 6.13 -91.77 -0.56 -1.19 16 26 C -0.17 -0.76 10.15 -26.73 -0.27 -1.03 16 27 C -0.16 -0.88 10.23 -26.73 -0.27 -1.16 16 28 C -0.09 -1.32 6.79 -39.31 -0.27 -1.59 16 29 Cl 0.00 -0.04 28.02 -51.86 -1.45 -1.50 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 33 H 0.03 0.57 7.77 -51.93 -0.40 0.17 16 34 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.11 3.38 5.88 -51.93 -0.31 3.07 16 38 H 0.40 6.07 8.26 -40.82 -0.34 5.73 16 39 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.29 7.16 -51.93 -0.37 -0.08 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -34.83 372.03 -10.56 -45.39 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.08 Total: 2.57 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -3.03 Total: 4.04 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.33 Total: -62.63 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.45 Total: -1.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.83 -10.56 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080042607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.226 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds