Wall clock time and date at job start Tue Mar 31 2020 22:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 N 1.28434 * 125.18950 * 275.28563 * 3 2 1 5 5 C 1.30842 * 110.98119 * 180.24355 * 4 3 2 6 6 C 1.39803 * 107.87527 * 359.75584 * 5 4 3 7 7 Cl 1.73599 * 127.33715 * 180.02562 * 6 5 4 8 8 C 1.36751 * 125.18401 * 95.10635 * 3 2 1 9 9 C 1.47025 * 126.90483 * 0.03411 * 8 3 2 10 10 O 1.21649 * 120.00090 * 266.56092 * 9 8 3 11 11 N 1.34777 * 120.00041 * 86.56122 * 9 8 3 12 12 C 1.47806 * 135.01298 * 354.99635 * 11 9 8 13 13 C 1.54648 * 85.79489 * 153.80439 * 12 11 9 14 14 H 1.09001 * 114.44145 * 139.83586 * 13 12 11 15 15 C 1.53016 * 110.83917 * 270.23002 * 13 12 11 16 16 C 1.53101 * 109.44691 * 143.89488 * 15 13 12 17 17 N 1.46621 * 108.00446 * 301.01277 * 16 15 13 18 18 C 1.36936 * 119.89213 * 237.35494 * 17 16 15 19 19 H 1.07992 * 120.00114 * 26.90881 * 18 17 16 20 20 C 1.38816 * 119.99558 * 206.90932 * 18 17 16 21 21 N 1.31619 * 120.00661 * 9.99626 * 20 18 17 22 22 Si 1.86804 * 119.99592 * 189.99727 * 20 18 17 23 23 H 1.48498 * 109.47284 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46819 * 120.00011 * 22 20 18 25 25 H 1.48499 * 109.47081 * 239.99744 * 22 20 18 26 26 C 1.45682 * 120.21692 * 57.33549 * 17 16 15 27 27 C 1.46815 * 135.01231 * 174.98832 * 11 9 8 28 28 H 1.08998 * 111.56344 * 94.48037 * 27 11 9 29 29 H 1.08999 * 109.47081 * 55.04187 * 1 2 3 30 30 H 1.09004 * 109.47088 * 175.03781 * 1 2 3 31 31 H 1.08999 * 109.47166 * 295.04116 * 1 2 3 32 32 H 1.09006 * 109.46847 * 239.99911 * 2 1 3 33 33 H 1.08998 * 109.47145 * 120.00768 * 2 1 3 34 34 H 1.07995 * 126.05967 * 179.78642 * 5 4 3 35 35 H 1.08998 * 113.81999 * 39.58512 * 12 11 9 36 36 H 1.09004 * 113.81761 * 268.02125 * 12 11 9 37 37 H 1.09003 * 109.46844 * 263.88073 * 15 13 12 38 38 H 1.08999 * 109.47616 * 23.89783 * 15 13 12 39 39 H 1.08994 * 109.75922 * 60.64214 * 16 15 13 40 40 H 1.08999 * 109.75059 * 181.34171 * 16 15 13 41 41 H 0.96999 * 120.00450 * 180.02562 * 21 20 18 42 42 H 1.09000 * 108.71670 * 199.76611 * 26 17 16 43 43 H 1.09002 * 108.71719 * 81.73975 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1739 2.1112 -1.0452 5 6 2.6294 3.2955 -0.7259 6 6 2.7786 3.3376 0.6635 7 17 3.3478 4.6687 1.6215 8 6 2.3748 2.0909 1.1132 9 6 2.3421 1.6229 2.5066 10 8 1.3626 1.8340 3.1964 11 7 3.3974 0.9599 3.0197 12 6 4.6769 0.4537 2.4800 13 6 5.2115 0.5965 3.9241 14 1 5.8613 -0.2170 4.2470 15 6 5.8048 1.9887 4.1497 16 6 5.5007 2.4470 5.5786 17 7 4.0446 2.4610 5.7498 18 6 3.4125 3.6169 6.1232 19 1 3.8504 4.5741 5.8817 20 6 2.2088 3.5582 6.8122 21 7 1.7728 2.4073 7.2787 22 14 1.2077 5.1129 7.0771 23 1 1.9107 6.2658 6.4592 24 1 -0.1286 4.9542 6.4491 25 1 1.0447 5.3545 8.5333 26 6 3.2681 1.2494 5.5236 27 6 3.7526 0.4413 4.3465 28 1 3.4748 -0.6072 4.4543 29 1 -0.3633 0.5888 -0.8422 30 1 -0.3633 -1.0238 -0.0889 31 1 -0.3633 0.4350 0.9311 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.8505 4.0982 -1.4136 35 1 5.1510 1.1275 1.7664 36 1 4.6292 -0.5769 2.1281 37 1 6.8841 1.9520 4.0018 38 1 5.3644 2.6906 3.4415 39 1 5.9488 1.7543 6.2909 40 1 5.9007 3.4485 5.7372 41 1 0.9316 2.3663 7.7598 42 1 2.2281 1.5273 5.3527 43 1 3.3191 0.6290 6.4184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084369922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:38 Heat of formation + Delta-G solvation = 110.745097 kcal Electronic energy + Delta-G solvation = -28948.675830 eV Core-core repulsion = 25059.163045 eV Total energy + Delta-G solvation = -3889.512786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58238 -40.38652 -37.61560 -36.34563 -35.20662 -34.64778 -32.17986 -31.01928 -30.15272 -29.87171 -28.73857 -26.98093 -24.36907 -23.89003 -23.52577 -22.19052 -21.47505 -20.96192 -19.58734 -18.26596 -17.58801 -16.47277 -16.13958 -15.83316 -15.78973 -15.33104 -15.06806 -14.32581 -14.23858 -13.96134 -13.66857 -13.31213 -13.23500 -13.17430 -13.00361 -12.67094 -12.38222 -12.34163 -11.94238 -11.71841 -11.61433 -11.52074 -11.44135 -11.13278 -10.69143 -10.68058 -10.47587 -10.34120 -10.15423 -9.96392 -9.83151 -9.74615 -9.28085 -9.13945 -8.63823 -8.32830 -8.25690 -6.56509 -5.64341 -3.08637 1.55035 1.88102 2.46994 2.62474 2.95084 3.20052 3.48072 3.56242 3.56924 4.28062 4.39976 4.59870 4.66162 4.66470 4.85487 4.90267 5.11491 5.21881 5.33030 5.35578 5.39300 5.45565 5.51279 5.55478 5.60377 5.66544 5.85828 5.87339 5.99950 6.10124 6.19045 6.28093 6.39912 6.48538 6.56843 6.60968 6.79517 7.01753 7.47801 7.77733 7.89210 7.94692 8.07201 8.47756 8.59563 9.37236 9.99977 10.48529 11.43735 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.005327 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.005358 B = 5255.241548 C = 5701.444847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.120 3.880 3 N -0.268 5.268 4 N -0.279 5.279 5 C 0.019 3.981 6 C -0.120 4.120 7 Cl -0.009 7.009 8 C 0.009 3.991 9 C 0.609 3.391 10 O -0.494 6.494 11 N -0.618 5.618 12 C 0.092 3.908 13 C -0.106 4.106 14 H 0.089 0.911 15 C -0.119 4.119 16 C 0.148 3.852 17 N -0.584 5.584 18 C -0.247 4.247 19 H 0.062 0.938 20 C 0.010 3.990 21 N -0.906 5.906 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.291 1.291 26 C 0.165 3.835 27 C 0.127 3.873 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.192 0.808 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.056 0.944 41 H 0.251 0.749 42 H 0.106 0.894 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 -7.172 -15.842 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.057 5.057 4 N -0.109 5.109 5 C -0.159 4.159 6 C -0.158 4.158 7 Cl 0.019 6.981 8 C -0.121 4.121 9 C 0.393 3.607 10 O -0.365 6.365 11 N -0.354 5.354 12 C -0.031 4.031 13 C -0.125 4.125 14 H 0.107 0.893 15 C -0.159 4.159 16 C 0.022 3.978 17 N -0.306 5.306 18 C -0.376 4.376 19 H 0.080 0.920 20 C -0.188 4.188 21 N -0.551 5.551 22 Si 0.729 3.271 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.218 1.218 26 C 0.039 3.961 27 C 0.024 3.976 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.209 0.791 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.124 0.876 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.324 -7.681 -16.255 18.491 hybrid contribution -0.354 1.354 0.659 1.547 sum 3.970 -6.326 -15.596 17.292 Atomic orbital electron populations 1.22187 0.93051 1.03646 1.04127 1.22024 0.96572 0.76349 1.05069 1.45670 1.45982 1.12153 1.01908 1.73141 1.19780 1.04340 1.13648 1.23455 1.03969 0.95651 0.92853 1.21324 1.10772 0.91116 0.92577 1.98395 1.87031 1.42443 1.70222 1.21513 1.07314 0.93390 0.89922 1.16248 0.82144 0.78863 0.83419 1.90943 1.31502 1.54797 1.59297 1.49783 1.17599 1.54622 1.13423 1.23632 0.82944 0.98454 0.98041 1.22849 0.96343 0.99466 0.93877 0.89291 1.21886 0.98293 0.94300 1.01381 1.20740 0.86510 0.98643 0.91946 1.43449 0.99627 1.08469 1.79078 1.19107 1.04328 0.85129 1.29044 0.91981 1.24976 0.99657 0.96538 0.97628 1.69971 1.21719 1.23518 1.39882 0.86270 0.80628 0.83070 0.77130 1.20388 1.21520 1.21819 1.20157 0.98607 0.87178 0.90201 1.22839 0.91496 0.97709 0.85600 0.90657 0.91219 0.89904 0.91056 0.87732 0.88418 0.79126 0.90600 0.90369 0.92688 0.91721 0.96190 0.92522 0.93850 0.87584 0.94820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.24 37.16 0.38 -1.36 16 2 C 0.12 1.25 6.91 -4.05 -0.03 1.23 16 3 N -0.27 -3.80 3.35 -57.11 -0.19 -3.99 16 4 N -0.28 -3.92 11.89 30.61 0.36 -3.55 16 5 C 0.02 0.26 12.04 -17.39 -0.21 0.06 16 6 C -0.12 -1.99 6.89 -38.88 -0.27 -2.26 16 7 Cl -0.01 -0.17 29.24 -51.86 -1.52 -1.68 16 8 C 0.01 0.15 6.49 -82.00 -0.53 -0.38 16 9 C 0.61 12.13 7.05 -12.70 -0.09 12.04 16 10 O -0.49 -12.28 16.33 5.23 0.09 -12.19 16 11 N -0.62 -10.85 3.34 -175.41 -0.59 -11.44 16 12 C 0.09 1.20 7.95 -3.01 -0.02 1.18 16 13 C -0.11 -1.55 4.39 -89.97 -0.40 -1.94 16 14 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.12 -1.95 5.66 -26.67 -0.15 -2.10 16 16 C 0.15 3.00 6.47 -3.92 -0.03 2.97 16 17 N -0.58 -14.57 3.02 -175.07 -0.53 -15.10 16 18 C -0.25 -6.96 9.54 -15.06 -0.14 -7.10 16 19 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 20 C 0.01 0.30 5.05 -17.43 -0.09 0.21 16 21 N -0.91 -27.22 10.80 55.49 0.60 -26.62 16 22 Si 0.90 23.39 29.57 -169.99 -5.03 18.36 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 C 0.16 3.98 4.61 -5.60 -0.03 3.95 16 27 C 0.13 2.31 4.22 -69.59 -0.29 2.01 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.00 7.65 -51.93 -0.40 0.60 16 34 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.08 0.97 7.97 -51.93 -0.41 0.56 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.19 7.69 -51.93 -0.40 0.79 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.11 3.04 4.92 -51.93 -0.26 2.78 16 43 H 0.03 0.88 7.95 -51.93 -0.41 0.46 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -34.72 367.92 -9.21 -43.93 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.06 Total: -1.77 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -1.89 Total: 8.51 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.34 Total: -60.71 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.03 Total: 18.36 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.72 -9.21 -43.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084369922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.675 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds