Wall clock time and date at job start Tue Mar 31 2020 20:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31927 * 119.01810 * 2 1 4 4 C 1.32133 * 121.05729 * 179.97438 * 3 2 1 5 5 C 1.38990 * 119.12263 * 359.97438 * 4 3 2 6 6 Cl 1.73609 * 120.88260 * 180.02562 * 5 4 3 7 7 C 1.39628 * 118.23047 * 359.97438 * 5 4 3 8 8 C 1.48369 * 120.56418 * 180.02562 * 7 5 4 9 9 O 1.21486 * 119.99864 * 359.97438 * 8 7 5 10 10 N 1.34769 * 119.99684 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99798 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47068 * 34.99973 * 11 10 8 13 13 C 1.52997 * 109.47212 * 274.99913 * 11 10 8 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47106 * 60.00162 * 14 13 11 16 16 C 1.53002 * 109.47128 * 300.00123 * 15 14 13 17 17 C 1.52997 * 109.46978 * 59.99726 * 16 15 14 18 18 H 1.09002 * 109.47497 * 60.00450 * 17 16 15 19 19 N 1.46507 * 109.47235 * 180.02562 * 17 16 15 20 20 C 1.36936 * 119.99663 * 275.00138 * 19 17 16 21 21 H 1.07998 * 120.00133 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99967 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99860 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00257 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47031 * 89.99671 * 24 22 20 26 26 H 1.48497 * 109.47355 * 209.99699 * 24 22 20 27 27 H 1.48503 * 109.46861 * 330.00009 * 24 22 20 28 28 N 1.31523 * 119.01558 * 180.24924 * 2 1 3 29 29 H 1.08999 * 109.46941 * 90.00670 * 1 2 3 30 30 H 1.08998 * 109.47056 * 210.00233 * 1 2 3 31 31 H 1.09002 * 109.46792 * 330.00372 * 1 2 3 32 32 H 1.07999 * 120.43828 * 180.02562 * 4 3 2 33 33 H 0.97005 * 120.00963 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.47153 * 300.00008 * 13 11 10 35 35 H 1.08998 * 109.47533 * 59.99637 * 13 11 10 36 36 H 1.09002 * 109.47103 * 300.00247 * 14 13 11 37 37 H 1.08996 * 109.47747 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.47407 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47596 * 60.00070 * 15 14 13 40 40 H 1.09002 * 109.47097 * 299.99925 * 16 15 14 41 41 H 1.08998 * 109.47844 * 180.02562 * 16 15 14 42 42 H 0.96997 * 120.00022 * 95.00053 * 19 17 16 43 43 H 0.96998 * 119.99581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 0.0005 5 6 4.1867 0.0113 0.0016 6 17 5.9228 0.0198 0.0030 7 6 3.4758 -1.1904 0.0026 8 6 4.1912 -2.4902 0.0044 9 8 5.4058 -2.5151 0.0045 10 7 3.4936 -3.6433 0.0049 11 6 4.2000 -4.9268 0.0060 12 1 5.1124 -4.8388 0.5958 13 6 4.5566 -5.3140 -1.4305 14 6 5.2948 -6.6540 -1.4293 15 6 4.3957 -7.7311 -0.8192 16 6 4.0390 -7.3440 0.6175 17 6 3.3008 -6.0039 0.6162 18 1 2.3883 -6.0922 0.0266 19 7 2.9598 -5.6329 1.9919 20 6 1.8139 -6.1143 2.5668 21 1 1.1615 -6.7671 2.0060 22 6 1.4905 -5.7624 3.8700 23 7 2.2855 -4.9664 4.5533 24 14 -0.0721 -6.4196 4.6546 25 1 0.2199 -7.7053 5.3378 26 1 -0.5799 -5.4368 5.6452 27 1 -1.0987 -6.6392 3.6042 28 7 2.1450 -1.1501 -0.0050 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 3.9812 2.1507 0.0009 33 1 2.5237 -3.6236 0.0037 34 1 3.6441 -5.4020 -2.0203 35 1 5.1975 -4.5469 -1.8652 36 1 6.2073 -6.5656 -0.8397 37 1 5.5485 -6.9301 -2.4528 38 1 4.9217 -8.6857 -0.8179 39 1 3.4832 -7.8196 -1.4088 40 1 4.9515 -7.2556 1.2071 41 1 3.3988 -8.1115 1.0524 42 1 3.5456 -5.0463 2.4954 43 1 2.0596 -4.7208 5.4641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085353814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:53 Heat of formation + Delta-G solvation = 12.168411 kcal Electronic energy + Delta-G solvation = -27483.857026 eV Core-core repulsion = 23590.069635 eV Total energy + Delta-G solvation = -3893.787392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44178 -39.61306 -37.85282 -36.74774 -34.33008 -34.02145 -33.60782 -33.13692 -31.14794 -29.40312 -28.53134 -27.79310 -25.75828 -23.74709 -23.42523 -22.08979 -21.08545 -20.40979 -19.68889 -18.36155 -17.81668 -17.05861 -16.24599 -15.88335 -15.81438 -15.34112 -14.89317 -14.54238 -14.17473 -13.87993 -13.67425 -13.65152 -13.48567 -13.06740 -12.96883 -12.67159 -12.54962 -12.18527 -12.11259 -11.92448 -11.53528 -11.46430 -11.08472 -11.07807 -10.91934 -10.85369 -10.76819 -10.57249 -10.34956 -10.17339 -10.14259 -9.74743 -9.65472 -9.31028 -9.21796 -8.91965 -8.63162 -6.99124 -5.77955 -3.07682 0.23578 0.56564 1.85134 2.79428 3.07925 3.41271 3.46521 3.48335 3.59980 3.64061 3.75022 4.30341 4.48958 4.55229 4.80743 5.04645 5.10762 5.16910 5.30534 5.38691 5.49713 5.51910 5.55101 5.63887 5.70045 5.79249 5.88054 5.93645 5.96359 6.05007 6.10780 6.29927 6.43428 6.45255 6.45435 6.48831 6.56752 6.80403 6.86901 7.05586 7.63320 7.67488 7.84402 8.37080 8.39246 9.50752 10.06618 10.41719 11.44009 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.004553 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.668260 B = 6147.836626 C = 8172.528438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.319 3.681 3 N -0.496 5.496 4 C 0.164 3.836 5 C -0.111 4.111 6 Cl -0.003 7.003 7 C 0.155 3.845 8 C 0.563 3.437 9 O -0.514 6.514 10 N -0.679 5.679 11 C 0.139 3.861 12 H 0.088 0.912 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.120 4.120 16 C -0.132 4.132 17 C 0.173 3.827 18 H 0.052 0.948 19 N -0.721 5.721 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.282 1.282 28 N -0.473 5.473 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.183 0.817 33 H 0.414 0.586 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.384 0.616 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 8.836 -13.890 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.211 5.211 4 C -0.005 4.005 5 C -0.144 4.144 6 Cl 0.026 6.974 7 C 0.006 3.994 8 C 0.345 3.655 9 O -0.389 6.389 10 N -0.328 5.328 11 C 0.034 3.966 12 H 0.106 0.894 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.158 4.158 16 C -0.173 4.173 17 C 0.063 3.937 18 H 0.070 0.930 19 N -0.362 5.362 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 N -0.190 5.190 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.200 0.800 33 H 0.250 0.750 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.218 0.782 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.069 8.686 -13.822 16.455 hybrid contribution -0.046 -0.077 0.856 0.861 sum 2.022 8.609 -12.965 15.694 Atomic orbital electron populations 1.20657 0.84620 1.05063 1.04207 1.23400 0.98688 0.82756 0.89926 1.68304 1.08932 1.30416 1.13440 1.23372 0.89266 0.97325 0.90529 1.22861 0.89778 0.96011 1.05772 1.98431 1.04315 1.98617 1.95989 1.21781 0.89552 0.94462 0.93592 1.17582 0.86691 0.82792 0.78478 1.90849 1.12037 1.86487 1.49497 1.45767 1.11420 1.04581 1.71033 1.21433 0.96789 0.82195 0.96148 0.89444 1.21874 1.00472 0.97391 0.96573 1.21465 0.98785 0.94495 1.00359 1.21588 0.99138 0.97657 0.97413 1.22217 1.00924 0.99515 0.94681 1.20464 0.94728 0.90615 0.87915 0.93029 1.42405 1.26394 1.57982 1.09381 1.19187 0.98586 1.23494 0.95751 0.91177 1.24727 0.98706 1.00170 0.97057 1.69674 1.38010 1.39186 1.10860 0.86237 0.83090 0.78003 0.79109 1.21794 1.21901 1.20758 1.68393 1.07461 1.30810 1.12348 0.89219 0.88667 0.89236 0.80017 0.74958 0.91910 0.91849 0.91896 0.92334 0.92647 0.92350 0.92413 0.91519 0.78177 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.31 36.01 0.37 -0.47 16 2 C 0.32 4.21 7.64 -157.31 -1.20 3.01 16 3 N -0.50 -6.24 10.31 -10.70 -0.11 -6.35 16 4 C 0.16 1.89 11.14 -17.14 -0.19 1.70 16 5 C -0.11 -1.55 6.40 -38.78 -0.25 -1.79 16 6 Cl 0.00 -0.03 26.25 -51.86 -1.36 -1.40 16 7 C 0.16 2.47 6.79 -82.61 -0.56 1.91 16 8 C 0.56 9.83 7.79 -12.09 -0.09 9.74 16 9 O -0.51 -9.66 13.81 5.38 0.07 -9.59 16 10 N -0.68 -11.59 4.90 -54.58 -0.27 -11.86 16 11 C 0.14 2.34 1.97 -67.93 -0.13 2.21 16 12 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 13 C -0.12 -1.73 5.49 -26.74 -0.15 -1.88 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 16 C -0.13 -2.25 5.50 -26.73 -0.15 -2.40 16 17 C 0.17 3.24 2.29 -67.93 -0.16 3.08 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 N -0.72 -17.18 4.95 -53.42 -0.26 -17.44 16 20 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 24 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 N -0.47 -7.20 9.59 -7.31 -0.07 -7.28 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.41 7.14 7.99 -40.82 -0.33 6.81 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.38 10.16 7.80 -40.82 -0.32 9.85 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -30.78 371.56 -9.85 -40.63 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.08 Total: 12.83 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -3.07 Total: 4.90 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: 0.01 Total: -69.90 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.36 Total: -1.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.78 -9.85 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085353814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.796 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds