Wall clock time and date at job start Tue Mar 31 2020 21:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.99899 * 2 1 4 4 C 1.54336 * 109.99018 * 238.96204 * 2 1 3 5 5 H 1.09003 * 110.51772 * 336.97913 * 4 2 1 6 6 N 1.46499 * 111.00216 * 100.12564 * 4 2 1 7 7 C 1.34773 * 120.00031 * 200.23915 * 6 4 2 8 8 O 1.21609 * 120.00571 * 359.97438 * 7 6 4 9 9 C 1.47392 * 119.99645 * 180.02562 * 7 6 4 10 10 C 1.41390 * 126.42157 * 89.69052 * 9 7 6 11 11 Cl 1.73593 * 126.00618 * 359.97438 * 10 9 7 12 12 N 1.30537 * 107.98804 * 179.87662 * 10 9 7 13 13 N 1.39936 * 108.89105 * 0.38001 * 12 10 9 14 14 H 0.96998 * 125.73395 * 179.79027 * 13 12 10 15 15 C 1.34230 * 108.52356 * 359.75250 * 13 12 10 16 16 C 1.50703 * 126.27973 * 179.97438 * 15 13 12 17 17 C 1.53003 * 117.49778 * 8.62206 * 16 15 13 18 18 C 1.52996 * 59.99863 * 252.51196 * 17 16 15 19 19 C 1.55158 * 103.02517 * 218.66688 * 4 2 1 20 20 C 1.54909 * 101.57643 * 35.30696 * 19 4 2 21 21 N 1.47021 * 109.88384 * 121.09879 * 2 1 3 22 22 C 1.36930 * 125.64991 * 298.39325 * 21 2 1 23 23 H 1.08009 * 119.99926 * 342.78183 * 22 21 2 24 24 C 1.38807 * 120.00582 * 162.78235 * 22 21 2 25 25 N 1.31623 * 119.99599 * 332.09393 * 24 22 21 26 26 Si 1.86801 * 120.00534 * 152.09403 * 24 22 21 27 27 H 1.48502 * 109.47100 * 270.00140 * 26 24 22 28 28 H 1.48499 * 109.46758 * 29.99901 * 26 24 22 29 29 H 1.48494 * 109.47437 * 149.99884 * 26 24 22 30 30 H 1.09000 * 109.46664 * 300.35521 * 1 2 3 31 31 H 1.08997 * 109.47292 * 60.35443 * 1 2 3 32 32 H 1.08994 * 109.47389 * 180.36069 * 1 2 3 33 33 H 0.97004 * 119.99773 * 20.23921 * 6 4 2 34 34 H 1.08992 * 115.55028 * 154.32899 * 16 15 13 35 35 H 1.09003 * 117.49939 * 0.02562 * 17 16 15 36 36 H 1.09000 * 117.49658 * 145.01813 * 17 16 15 37 37 H 1.09000 * 117.49556 * 252.50546 * 18 17 16 38 38 H 1.09004 * 117.49668 * 107.49347 * 18 17 16 39 39 H 1.08994 * 111.00170 * 277.23705 * 19 4 2 40 40 H 1.09003 * 111.00493 * 153.37992 * 19 4 2 41 41 H 1.09004 * 110.36507 * 204.15437 * 20 19 4 42 42 H 1.09002 * 110.36814 * 81.83239 * 20 19 4 43 43 H 0.96995 * 120.00396 * 353.96571 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3052 -1.4406 -1.6197 6 7 2.4630 0.1937 -2.2893 7 6 2.5607 -0.2210 -3.5679 8 8 2.3127 -1.3769 -3.8529 9 6 2.9692 0.7263 -4.6206 10 6 4.2920 0.9928 -5.0429 11 17 5.7325 0.2594 -4.4101 12 7 4.2395 1.8858 -5.9936 13 7 2.9023 2.2337 -6.2150 14 1 2.5852 2.8790 -6.8661 15 6 2.1322 1.5239 -5.3754 16 6 0.6299 1.5866 -5.2745 17 6 -0.1169 2.3895 -6.3416 18 6 0.0015 2.9350 -4.9171 19 6 3.2863 -1.5185 -0.6916 20 6 2.8098 -1.8826 0.7367 21 7 2.0300 -0.7141 1.1839 22 6 1.8039 -0.3566 2.4862 23 1 1.4640 0.6414 2.7210 24 6 2.0115 -1.2765 3.5047 25 7 1.8826 -2.5642 3.2646 26 14 2.4737 -0.6871 5.2159 27 1 3.9521 -0.6030 5.3280 28 1 1.8821 0.6539 5.4541 29 1 1.9544 -1.6437 6.2261 30 1 -0.3633 0.5194 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3634 -1.0276 0.0065 33 1 2.6612 1.1157 -2.0619 34 1 0.1467 0.6884 -4.8901 35 1 0.4785 2.8720 -7.1168 36 1 -1.0916 2.0195 -6.6595 37 1 -0.8954 2.9239 -4.2978 38 1 0.6748 3.7768 -4.7549 39 1 4.1669 -0.8770 -0.6580 40 1 3.4806 -2.4157 -1.2793 41 1 3.6655 -2.0413 1.3931 42 1 2.1800 -2.7719 0.7113 43 1 1.5582 -2.8667 2.4020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088614849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:54 Heat of formation + Delta-G solvation = 80.774286 kcal Electronic energy + Delta-G solvation = -27282.796215 eV Core-core repulsion = 23391.983797 eV Total energy + Delta-G solvation = -3890.812418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.96620 -39.44546 -37.71596 -37.59170 -36.94647 -34.12007 -32.27338 -31.68757 -30.82731 -30.49629 -28.38539 -25.33704 -24.24964 -23.76933 -23.03819 -22.50022 -21.71839 -20.36814 -20.16335 -19.50964 -18.19287 -17.28415 -16.62204 -16.34994 -16.12553 -15.55235 -15.35571 -14.67860 -14.34416 -14.17170 -14.10686 -13.67078 -13.32579 -12.94262 -12.93394 -12.72637 -12.53393 -12.17245 -11.94161 -11.86355 -11.73337 -11.41306 -11.29374 -11.25654 -10.92256 -10.81616 -10.69626 -10.50561 -10.33952 -10.05392 -9.99731 -9.86138 -9.73165 -9.50180 -9.02923 -8.72496 -8.40201 -6.94811 -6.07085 -3.12989 1.09354 1.17050 1.84973 2.46017 2.61585 3.23278 3.40552 3.52522 3.55223 3.71015 3.81787 4.13866 4.31533 4.53034 4.55434 4.61436 4.87222 5.01296 5.14293 5.17201 5.30604 5.34335 5.40094 5.45544 5.47561 5.52750 5.58041 5.74120 6.02619 6.10912 6.16990 6.25511 6.40092 6.53982 6.54900 6.56950 6.83746 6.89605 6.99755 7.05111 7.10263 7.67279 7.81573 8.34467 8.50237 9.04032 9.83012 10.37790 11.25392 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003162 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.872988 B = 8851.688720 C = 9909.874669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.136 3.864 5 H 0.093 0.907 6 N -0.703 5.703 7 C 0.596 3.404 8 O -0.529 6.529 9 C -0.258 4.258 10 C 0.160 3.840 11 Cl 0.026 6.974 12 N -0.274 5.274 13 N -0.448 5.448 14 H 0.446 0.554 15 C 0.176 3.824 16 C -0.109 4.109 17 C -0.170 4.170 18 C -0.156 4.156 19 C -0.145 4.145 20 C 0.145 3.855 21 N -0.594 5.594 22 C -0.333 4.333 23 H 0.065 0.935 24 C -0.024 4.024 25 N -0.916 5.916 26 Si 1.067 2.933 27 H -0.294 1.294 28 H -0.293 1.293 29 H -0.291 1.291 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.399 0.601 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.028 0.972 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 12.207 -20.715 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.055 0.945 4 C 0.032 3.968 5 H 0.111 0.889 6 N -0.352 5.352 7 C 0.380 3.620 8 O -0.405 6.405 9 C -0.273 4.273 10 C -0.032 4.032 11 Cl 0.054 6.946 12 N -0.099 5.099 13 N -0.157 5.157 14 H 0.292 0.708 15 C 0.044 3.956 16 C -0.129 4.129 17 C -0.207 4.207 18 C -0.193 4.193 19 C -0.184 4.184 20 C 0.019 3.981 21 N -0.320 5.320 22 C -0.461 4.461 23 H 0.083 0.917 24 C -0.226 4.226 25 N -0.557 5.557 26 Si 0.897 3.103 27 H -0.221 1.221 28 H -0.220 1.220 29 H -0.217 1.217 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.234 0.766 34 H 0.157 0.843 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.015 11.497 -20.007 23.075 hybrid contribution -0.763 0.772 -1.222 1.634 sum -0.778 12.268 -21.229 24.531 Atomic orbital electron populations 1.22189 0.97674 1.01328 0.99959 1.21043 0.92531 0.95051 0.86571 0.94515 1.22132 0.97164 0.90948 0.86564 0.88854 1.46013 1.68416 1.14209 1.06600 1.17036 0.77036 0.86395 0.81573 1.90802 1.49183 1.18200 1.82311 1.19764 0.91031 1.08962 1.07583 1.22582 0.88988 0.95989 0.95662 1.98441 1.33341 1.79232 1.83585 1.77186 0.95646 1.18034 1.19073 1.45773 1.03419 1.34903 1.31625 0.70808 1.20360 0.92591 0.91843 0.90806 1.20764 0.86215 0.98973 1.06908 1.23060 1.02522 1.02849 0.92300 1.23144 1.03167 0.94902 0.98114 1.23206 0.97274 0.99897 0.98041 1.21536 0.94835 0.90615 0.91085 1.44594 1.57502 1.29209 1.00691 1.19706 1.47826 0.97372 0.81178 0.91729 1.25710 1.00165 0.93980 1.02785 1.70738 1.44637 1.14668 1.25671 0.83490 0.76618 0.74512 0.75705 1.22117 1.21957 1.21703 0.92502 0.94426 0.93120 0.76624 0.84334 0.88854 0.87012 0.86916 0.88137 0.91455 0.91375 0.92792 0.95412 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.14 37.16 0.34 -2.47 16 2 C 0.16 3.05 3.49 -66.95 -0.23 2.82 16 3 H 0.04 0.71 7.70 -51.93 -0.40 0.31 16 4 C 0.14 2.40 2.76 -66.09 -0.18 2.22 16 5 H 0.09 1.75 7.39 -51.93 -0.38 1.37 16 6 N -0.70 -10.24 5.21 -53.11 -0.28 -10.52 16 7 C 0.60 9.09 7.31 -12.54 -0.09 9.00 16 8 O -0.53 -9.97 16.83 5.27 0.09 -9.88 16 9 C -0.26 -3.34 5.88 -105.04 -0.62 -3.96 16 10 C 0.16 2.09 7.89 -16.90 -0.13 1.95 16 11 Cl 0.03 0.33 29.19 -51.86 -1.51 -1.18 16 12 N -0.27 -3.23 12.64 33.18 0.42 -2.81 16 13 N -0.45 -3.84 7.17 33.86 0.24 -3.60 16 14 H 0.45 2.18 7.95 -182.72 -1.45 0.73 16 15 C 0.18 1.73 6.80 -81.61 -0.55 1.18 16 16 C -0.11 -0.82 6.02 -91.77 -0.55 -1.38 16 17 C -0.17 -0.79 10.14 -26.73 -0.27 -1.06 16 18 C -0.16 -0.84 10.23 -26.74 -0.27 -1.12 16 19 C -0.14 -2.75 6.77 -24.58 -0.17 -2.92 16 20 C 0.15 3.38 5.30 -2.53 -0.01 3.36 16 21 N -0.59 -14.50 3.02 -162.57 -0.49 -14.99 16 22 C -0.33 -9.11 9.62 -15.06 -0.14 -9.25 16 23 H 0.06 1.77 7.97 -52.48 -0.42 1.35 16 24 C -0.02 -0.68 5.09 -17.43 -0.09 -0.77 16 25 N -0.92 -27.44 12.93 55.49 0.72 -26.72 16 26 Si 1.07 25.22 30.00 -169.99 -5.10 20.12 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 30 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.40 5.08 8.32 -40.82 -0.34 4.74 16 34 H 0.14 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.09 0.29 7.16 -51.93 -0.37 -0.08 16 36 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.37 7.95 -51.93 -0.41 0.96 16 42 H 0.03 0.69 6.81 -51.93 -0.35 0.34 16 43 H 0.27 8.11 6.05 -40.82 -0.25 7.87 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -33.56 375.19 -10.22 -43.78 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.97 Total: 2.54 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.98 Total: -2.39 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.61 Total: -58.64 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.10 Total: 20.12 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.51 Total: -1.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.56 -10.22 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088614849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.550 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds