Wall clock time and date at job start Tue Mar 31 2020 21:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.99899 * 2 1 4 4 C 1.54336 * 109.99018 * 238.96204 * 2 1 3 5 5 H 1.09003 * 110.51772 * 336.97913 * 4 2 1 6 6 N 1.46499 * 111.00216 * 100.12564 * 4 2 1 7 7 C 1.34773 * 120.00031 * 200.23915 * 6 4 2 8 8 O 1.21609 * 120.00571 * 359.97438 * 7 6 4 9 9 C 1.47392 * 119.99645 * 180.02562 * 7 6 4 10 10 C 1.41390 * 126.42157 * 89.69052 * 9 7 6 11 11 Cl 1.73593 * 126.00618 * 359.97438 * 10 9 7 12 12 N 1.30537 * 107.98804 * 179.87662 * 10 9 7 13 13 N 1.39936 * 108.89105 * 0.38001 * 12 10 9 14 14 H 0.96998 * 125.73395 * 179.79027 * 13 12 10 15 15 C 1.34230 * 108.52356 * 359.75250 * 13 12 10 16 16 C 1.50703 * 126.27973 * 179.97438 * 15 13 12 17 17 C 1.53003 * 117.49778 * 8.62206 * 16 15 13 18 18 C 1.52996 * 59.99863 * 252.51196 * 17 16 15 19 19 C 1.55158 * 103.02517 * 218.66688 * 4 2 1 20 20 C 1.54909 * 101.57643 * 35.30696 * 19 4 2 21 21 N 1.47021 * 109.88384 * 121.09879 * 2 1 3 22 22 C 1.36930 * 125.64991 * 298.39325 * 21 2 1 23 23 H 1.08009 * 119.99926 * 342.78183 * 22 21 2 24 24 C 1.38807 * 120.00582 * 162.78235 * 22 21 2 25 25 N 1.31623 * 119.99599 * 332.09393 * 24 22 21 26 26 Si 1.86801 * 120.00534 * 152.09403 * 24 22 21 27 27 H 1.48502 * 109.47100 * 270.00140 * 26 24 22 28 28 H 1.48499 * 109.46758 * 29.99901 * 26 24 22 29 29 H 1.48494 * 109.47437 * 149.99884 * 26 24 22 30 30 H 1.09000 * 109.46664 * 300.35521 * 1 2 3 31 31 H 1.08997 * 109.47292 * 60.35443 * 1 2 3 32 32 H 1.08994 * 109.47389 * 180.36069 * 1 2 3 33 33 H 0.97004 * 119.99773 * 20.23921 * 6 4 2 34 34 H 1.08992 * 115.55028 * 154.32899 * 16 15 13 35 35 H 1.09003 * 117.49939 * 0.02562 * 17 16 15 36 36 H 1.09000 * 117.49658 * 145.01813 * 17 16 15 37 37 H 1.09000 * 117.49556 * 252.50546 * 18 17 16 38 38 H 1.09004 * 117.49668 * 107.49347 * 18 17 16 39 39 H 1.08994 * 111.00170 * 277.23705 * 19 4 2 40 40 H 1.09003 * 111.00493 * 153.37992 * 19 4 2 41 41 H 1.09004 * 110.36507 * 204.15437 * 20 19 4 42 42 H 1.09002 * 110.36814 * 81.83239 * 20 19 4 43 43 H 0.96995 * 120.00396 * 353.96571 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3052 -1.4406 -1.6197 6 7 2.4630 0.1937 -2.2893 7 6 2.5607 -0.2210 -3.5679 8 8 2.3127 -1.3769 -3.8529 9 6 2.9692 0.7263 -4.6206 10 6 4.2920 0.9928 -5.0429 11 17 5.7325 0.2594 -4.4101 12 7 4.2395 1.8858 -5.9936 13 7 2.9023 2.2337 -6.2150 14 1 2.5852 2.8790 -6.8661 15 6 2.1322 1.5239 -5.3754 16 6 0.6299 1.5866 -5.2745 17 6 -0.1169 2.3895 -6.3416 18 6 0.0015 2.9350 -4.9171 19 6 3.2863 -1.5185 -0.6916 20 6 2.8098 -1.8826 0.7367 21 7 2.0300 -0.7141 1.1839 22 6 1.8039 -0.3566 2.4862 23 1 1.4640 0.6414 2.7210 24 6 2.0115 -1.2765 3.5047 25 7 1.8826 -2.5642 3.2646 26 14 2.4737 -0.6871 5.2159 27 1 3.9521 -0.6030 5.3280 28 1 1.8821 0.6539 5.4541 29 1 1.9544 -1.6437 6.2261 30 1 -0.3633 0.5194 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3634 -1.0276 0.0065 33 1 2.6612 1.1157 -2.0619 34 1 0.1467 0.6884 -4.8901 35 1 0.4785 2.8720 -7.1168 36 1 -1.0916 2.0195 -6.6595 37 1 -0.8954 2.9239 -4.2978 38 1 0.6748 3.7768 -4.7549 39 1 4.1669 -0.8770 -0.6580 40 1 3.4806 -2.4157 -1.2793 41 1 3.6655 -2.0413 1.3931 42 1 2.1800 -2.7719 0.7113 43 1 1.5582 -2.8667 2.4020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088614849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:53 Heat of formation + Delta-G solvation = 58.518511 kcal Electronic energy + Delta-G solvation = -27283.761298 eV Core-core repulsion = 23391.983797 eV Total energy + Delta-G solvation = -3891.777500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.82061 -40.82611 -39.19232 -38.31350 -37.79554 -35.74707 -33.96620 -32.62675 -32.21709 -31.75596 -30.15405 -26.83043 -25.70652 -25.13301 -23.66559 -23.34434 -22.55464 -21.99857 -21.65182 -20.78191 -19.31887 -18.98271 -17.80712 -17.45991 -16.94325 -16.41465 -16.35582 -16.06370 -15.91426 -15.51080 -15.48474 -15.12390 -14.91885 -14.50027 -14.44774 -13.63825 -13.44665 -13.40917 -13.39101 -13.01333 -12.75667 -12.57493 -12.50318 -12.48266 -12.21500 -12.15130 -12.09797 -11.92706 -11.85441 -11.66778 -11.51078 -11.49113 -11.16370 -10.56118 -10.49352 -10.11473 -9.89767 -8.99419 -8.26329 -5.28651 0.28332 0.30620 0.89589 1.41534 1.60620 1.67921 1.68865 1.85087 2.17926 2.68651 2.79527 3.20464 3.23742 3.43517 3.60886 3.62598 3.72722 3.79767 3.90620 3.95592 4.02089 4.12909 4.35961 4.39936 4.47393 4.52065 4.62759 4.70677 4.75593 4.85895 4.93277 4.95626 5.01516 5.04684 5.08898 5.15720 5.23869 5.34216 5.53442 5.74861 5.86243 6.11977 6.35583 6.47472 6.93495 7.14443 7.74303 8.32955 9.05852 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003162 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.872988 B = 8851.688720 C = 9909.874669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.152 3.848 3 H 0.053 0.947 4 C 0.155 3.845 5 H 0.084 0.916 6 N -0.690 5.690 7 C 0.606 3.394 8 O -0.568 6.568 9 C -0.291 4.291 10 C 0.150 3.850 11 Cl 0.018 6.982 12 N -0.286 5.286 13 N -0.426 5.426 14 H 0.463 0.537 15 C 0.202 3.798 16 C -0.137 4.137 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.131 4.131 20 C 0.151 3.849 21 N -0.613 5.613 22 C -0.332 4.332 23 H 0.065 0.935 24 C -0.080 4.080 25 N -0.949 5.949 26 Si 1.116 2.884 27 H -0.288 1.288 28 H -0.269 1.269 29 H -0.297 1.297 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.412 0.588 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.004 0.996 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 15.199 -22.518 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.046 3.954 3 H 0.071 0.929 4 C 0.050 3.950 5 H 0.102 0.898 6 N -0.340 5.340 7 C 0.392 3.608 8 O -0.447 6.447 9 C -0.306 4.306 10 C -0.042 4.042 11 Cl 0.046 6.954 12 N -0.111 5.111 13 N -0.137 5.137 14 H 0.314 0.686 15 C 0.068 3.932 16 C -0.157 4.157 17 C -0.187 4.187 18 C -0.183 4.183 19 C -0.170 4.170 20 C 0.025 3.975 21 N -0.339 5.339 22 C -0.460 4.460 23 H 0.083 0.917 24 C -0.276 4.276 25 N -0.592 5.592 26 Si 0.941 3.059 27 H -0.215 1.215 28 H -0.194 1.194 29 H -0.224 1.224 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.249 0.751 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.729 14.570 -21.866 26.286 hybrid contribution -0.615 -0.084 -0.784 1.000 sum -1.344 14.486 -22.650 26.920 Atomic orbital electron populations 1.22071 0.96498 1.00449 1.01169 1.21215 0.93371 0.95273 0.85541 0.92923 1.21712 0.95947 0.90863 0.86524 0.89794 1.45799 1.68116 1.14233 1.05892 1.17262 0.75692 0.86107 0.81769 1.90783 1.50875 1.20120 1.82890 1.19566 0.91740 1.10692 1.08632 1.22613 0.88768 0.96574 0.96249 1.98431 1.33797 1.79459 1.83753 1.77138 0.97243 1.17948 1.18815 1.45750 1.02288 1.34484 1.31212 0.68604 1.20565 0.93445 0.90043 0.89140 1.20781 0.84681 0.99828 1.10407 1.23250 1.02590 1.00648 0.92198 1.23250 1.02967 0.93226 0.98898 1.23061 0.98149 1.00551 0.95260 1.21354 0.93274 0.89900 0.92956 1.44811 1.58220 1.29571 1.01326 1.19957 1.46258 0.97125 0.82680 0.91682 1.27045 1.00466 0.93699 1.06400 1.70857 1.47363 1.15890 1.25119 0.82827 0.76582 0.74939 0.71520 1.21490 1.19395 1.22438 0.93960 0.90457 0.95018 0.75134 0.85800 0.86843 0.85943 0.86345 0.87334 0.90537 0.90875 0.95824 0.97776 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.14 71.98 0.66 -4.46 16 2 C 0.15 5.84 3.49 45.34 0.16 6.00 16 3 H 0.05 1.90 7.70 -2.39 -0.02 1.88 16 4 C 0.16 5.36 2.76 46.18 0.13 5.49 16 5 H 0.08 3.13 7.39 -2.39 -0.02 3.11 16 6 N -0.69 -19.14 5.21 -440.19 -2.29 -21.44 16 7 C 0.61 17.94 7.31 86.65 0.63 18.58 16 8 O -0.57 -21.33 16.83 -4.06 -0.07 -21.40 16 9 C -0.29 -7.11 5.88 -20.13 -0.12 -7.23 16 10 C 0.15 3.72 7.89 85.66 0.68 4.40 16 11 Cl 0.02 0.45 29.19 -2.72 -0.08 0.37 16 12 N -0.29 -6.17 12.64 -48.95 -0.62 -6.79 16 13 N -0.43 -6.06 7.17 -46.79 -0.34 -6.40 16 14 H 0.46 2.78 7.95 -213.43 -1.70 1.09 16 15 C 0.20 3.48 6.80 42.15 0.29 3.77 16 16 C -0.14 -1.69 6.02 -11.54 -0.07 -1.76 16 17 C -0.15 -0.79 10.14 30.59 0.31 -0.48 16 18 C -0.15 -1.04 10.23 30.59 0.31 -0.73 16 19 C -0.13 -5.01 6.77 31.99 0.22 -4.79 16 20 C 0.15 7.31 5.30 86.85 0.46 7.77 16 21 N -0.61 -30.31 3.02 -668.24 -2.02 -32.33 16 22 C -0.33 -18.28 9.62 84.03 0.81 -17.47 16 23 H 0.07 3.52 7.97 -2.91 -0.02 3.50 16 24 C -0.08 -4.58 5.09 84.86 0.43 -4.15 16 25 N -0.95 -58.80 12.93 21.65 0.28 -58.52 16 26 Si 1.12 51.25 30.00 68.60 2.06 53.31 16 27 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 29 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 30 H 0.04 1.62 8.02 -2.39 -0.02 1.60 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.41 9.58 8.32 -92.71 -0.77 8.81 16 34 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.11 0.15 7.16 -2.39 -0.02 0.13 16 36 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 39 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.02 1.25 7.95 -2.38 -0.02 1.24 16 42 H 0.00 0.24 6.81 -2.39 -0.02 0.22 16 43 H 0.26 16.11 6.05 -92.71 -0.56 15.55 16 Total: -1.00 -75.01 375.19 0.62 -74.39 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -1.19 Total: 13.88 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 4.89 Total: 4.93 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -4.99 Total: -125.47 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.07 Total: -21.40 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.06 Total: 53.31 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -0.08 Total: 0.37 kcal Total: -75.01 0.62 -74.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088614849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.911 kcal (2) G-P(sol) polarization free energy of solvation -75.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds