Wall clock time and date at job start Tue Mar 31 2020 21:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87113 * 2 1 4 4 C 1.54316 * 110.01285 * 238.89788 * 2 1 3 5 5 H 1.09006 * 110.72163 * 336.68361 * 4 2 1 6 6 N 1.46502 * 110.72041 * 99.77749 * 4 2 1 7 7 C 1.34775 * 120.00159 * 205.00389 * 6 4 2 8 8 O 1.21571 * 120.00072 * 359.97438 * 7 6 4 9 9 C 1.47671 * 119.99910 * 180.02562 * 7 6 4 10 10 N 1.31817 * 126.46217 * 0.02562 * 9 7 6 11 11 N 1.28467 * 110.13488 * 180.02562 * 10 9 7 12 12 H 0.97008 * 124.93251 * 179.97438 * 11 10 9 13 13 C 1.35638 * 110.13570 * 359.97438 * 11 10 9 14 14 C 1.50694 * 126.43712 * 180.02562 * 13 11 10 15 15 C 1.52999 * 117.50013 * 8.64122 * 14 13 11 16 16 C 1.53002 * 60.00241 * 252.51624 * 15 14 13 17 17 C 1.35463 * 107.12752 * 359.72584 * 13 11 10 18 18 Cl 1.73605 * 127.23874 * 180.25716 * 17 13 11 19 19 C 1.55154 * 102.94833 * 218.31900 * 4 2 1 20 20 C 1.54916 * 101.58051 * 35.50038 * 19 4 2 21 21 N 1.47025 * 109.88203 * 121.01516 * 2 1 3 22 22 C 1.36942 * 125.64778 * 298.49564 * 21 2 1 23 23 H 1.08008 * 119.99685 * 349.85233 * 22 21 2 24 24 C 1.38807 * 119.99988 * 169.85840 * 22 21 2 25 25 N 1.31612 * 120.00094 * 350.47350 * 24 22 21 26 26 Si 1.86804 * 119.99815 * 170.47701 * 24 22 21 27 27 H 1.48494 * 109.47252 * 94.13284 * 26 24 22 28 28 H 1.48507 * 109.46897 * 214.13389 * 26 24 22 29 29 H 1.48505 * 109.47320 * 334.12969 * 26 24 22 30 30 H 1.09000 * 109.47075 * 300.43879 * 1 2 3 31 31 H 1.08998 * 109.47010 * 60.43984 * 1 2 3 32 32 H 1.09003 * 109.46935 * 180.44080 * 1 2 3 33 33 H 0.96998 * 119.99840 * 24.99892 * 6 4 2 34 34 H 1.09001 * 115.55084 * 154.35265 * 14 13 11 35 35 H 1.08997 * 117.49793 * 0.02562 * 15 14 13 36 36 H 1.08996 * 117.50043 * 145.02818 * 15 14 13 37 37 H 1.09008 * 117.49768 * 252.51634 * 16 15 14 38 38 H 1.08993 * 117.50275 * 107.48926 * 16 15 14 39 39 H 1.09002 * 111.00206 * 277.43278 * 19 4 2 40 40 H 1.08990 * 111.01063 * 153.57566 * 19 4 2 41 41 H 1.08998 * 110.36828 * 204.15773 * 20 19 4 42 42 H 1.08998 * 110.36556 * 81.82890 * 20 19 4 43 43 H 0.97000 * 120.00138 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0582 -0.7490 -1.2415 5 1 1.3104 -1.4473 -1.6177 6 7 2.4542 0.1968 -2.2879 7 6 2.4584 -0.1896 -3.5791 8 8 2.1341 -1.3231 -3.8754 9 6 2.8582 0.7636 -4.6337 10 7 3.2326 2.0152 -4.4575 11 7 3.5105 2.5570 -5.5887 12 1 3.8078 3.4727 -5.7078 13 6 3.3279 1.6629 -6.5922 14 6 3.5471 1.9104 -8.0624 15 6 4.2123 3.2280 -8.4655 16 6 2.7195 3.0143 -8.7240 17 6 2.9178 0.5037 -6.0239 18 17 2.5399 -0.9861 -6.8312 19 6 3.2919 -1.5108 -0.6893 20 6 2.8177 -1.8763 0.7395 21 7 2.0301 -0.7124 1.1849 22 6 1.8022 -0.3540 2.4868 23 1 1.3534 0.6020 2.7131 24 6 2.1482 -1.2192 3.5156 25 7 2.5187 -2.4521 3.2420 26 14 2.0880 -0.6336 5.2885 27 1 0.7745 -0.9893 5.8829 28 1 3.1746 -1.2861 6.0624 29 1 2.2672 0.8400 5.3295 30 1 -0.3633 0.5206 0.8860 31 1 -0.3633 0.5070 -0.8939 32 1 -0.3633 -1.0277 0.0079 33 1 2.7133 1.1011 -2.0514 34 1 3.7765 1.0273 -8.6587 35 1 4.4918 3.9155 -7.6672 36 1 4.8796 3.2119 -9.3272 37 1 2.4047 2.8575 -9.7558 38 1 2.0166 3.5614 -8.0958 39 1 4.1682 -0.8634 -0.6564 40 1 3.4922 -2.4074 -1.2757 41 1 3.6743 -2.0284 1.3962 42 1 2.1937 -2.7697 0.7152 43 1 2.7601 -3.0569 3.9610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088705122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:51 Heat of formation + Delta-G solvation = 84.798961 kcal Electronic energy + Delta-G solvation = -26623.985206 eV Core-core repulsion = 22733.347312 eV Total energy + Delta-G solvation = -3890.637895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.11270 -39.44154 -37.78650 -37.41096 -36.59432 -33.97077 -32.31257 -31.69546 -30.83533 -30.31748 -28.57907 -25.41690 -24.21309 -23.94203 -23.19470 -22.90454 -21.45924 -20.35298 -20.06128 -19.35950 -18.31636 -16.94441 -16.69726 -16.38137 -16.10202 -15.70306 -15.03005 -14.63859 -14.49184 -14.27726 -13.98780 -13.83318 -13.32416 -12.95024 -12.71487 -12.24852 -12.23174 -12.06305 -11.99478 -11.72286 -11.50375 -11.48609 -11.15259 -11.06285 -10.89729 -10.80257 -10.72656 -10.55007 -10.36359 -10.03817 -9.80308 -9.76087 -9.63763 -9.58900 -8.96461 -8.62082 -8.51270 -6.79769 -5.71474 -3.04694 1.22318 1.52239 1.80453 2.59759 3.22141 3.26733 3.41453 3.41842 3.47292 3.49118 3.86704 4.09638 4.23437 4.33296 4.47114 4.52174 4.90795 4.96689 5.11349 5.24847 5.33929 5.39838 5.46770 5.47512 5.57629 5.62972 5.65784 5.88590 6.19539 6.28919 6.37597 6.40964 6.44912 6.56404 6.68048 6.75051 6.94606 7.16627 7.34615 7.54484 7.63118 7.80045 7.82267 8.28140 8.40409 9.21558 9.83586 10.50705 11.41248 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.002377 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.050459 B =11775.590269 C =12301.443349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.098 0.902 6 N -0.700 5.700 7 C 0.596 3.404 8 O -0.517 6.517 9 C 0.013 3.987 10 N -0.240 5.240 11 N -0.376 5.376 12 H 0.449 0.551 13 C 0.059 3.941 14 C -0.091 4.091 15 C -0.174 4.174 16 C -0.163 4.163 17 C -0.094 4.094 18 Cl -0.004 7.004 19 C -0.155 4.155 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.225 4.225 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.916 5.916 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.403 0.597 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 12.152 -25.631 28.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.032 3.968 5 H 0.116 0.884 6 N -0.350 5.350 7 C 0.378 3.622 8 O -0.390 6.390 9 C -0.150 4.150 10 N -0.075 5.075 11 N -0.091 5.091 12 H 0.295 0.705 13 C -0.068 4.068 14 C -0.111 4.111 15 C -0.211 4.211 16 C -0.200 4.200 17 C -0.132 4.132 18 Cl 0.025 6.975 19 C -0.194 4.194 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.354 4.354 23 H 0.093 0.907 24 C -0.203 4.203 25 N -0.563 5.563 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.238 0.762 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.157 11.836 -24.801 27.661 hybrid contribution 0.089 0.526 0.375 0.653 sum 3.246 12.362 -24.426 27.568 Atomic orbital electron populations 1.22225 0.97774 1.01481 0.99878 1.21019 0.92615 0.94864 0.86827 0.94646 1.22186 0.97669 0.90755 0.86209 0.88448 1.45899 1.67291 1.16425 1.05394 1.16725 0.78269 0.85715 0.81443 1.90842 1.47760 1.18509 1.81921 1.22035 1.07422 0.92018 0.93485 1.73699 1.16514 1.08936 1.08353 1.43130 1.49732 1.13700 1.02552 0.70523 1.20110 1.05853 0.89666 0.91125 1.20518 1.06783 0.95478 0.88284 1.23047 0.96360 0.97810 1.03921 1.23124 0.93913 1.00556 1.02438 1.20401 1.10779 0.90408 0.91581 1.98366 1.92724 1.28817 1.77611 1.23408 0.96812 0.99519 0.99709 1.21410 0.95588 0.89460 0.88632 1.44490 1.58216 1.29136 1.00088 1.18954 1.36069 0.99900 0.80447 0.90652 1.24820 1.02178 0.95410 0.97938 1.69956 1.51193 1.04378 1.30789 0.86150 0.77244 0.77816 0.84801 1.21664 1.21668 1.20661 0.92660 0.94443 0.92853 0.76157 0.84656 0.88956 0.87247 0.87331 0.88351 0.91968 0.91688 0.91047 0.95233 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.15 37.16 0.34 -2.64 16 2 C 0.15 3.18 3.47 -66.95 -0.23 2.95 16 3 H 0.04 0.71 7.72 -51.93 -0.40 0.31 16 4 C 0.14 2.56 2.84 -66.10 -0.19 2.37 16 5 H 0.10 1.95 7.26 -51.93 -0.38 1.57 16 6 N -0.70 -11.26 5.18 -53.03 -0.27 -11.53 16 7 C 0.60 9.88 7.82 -12.41 -0.10 9.79 16 8 O -0.52 -9.95 15.52 5.30 0.08 -9.87 16 9 C 0.01 0.18 7.13 -82.76 -0.59 -0.41 16 10 N -0.24 -2.80 11.91 33.42 0.40 -2.40 16 11 N -0.38 -3.09 6.76 33.62 0.23 -2.86 16 12 H 0.45 1.99 7.94 -190.43 -1.51 0.47 16 13 C 0.06 0.53 6.75 -81.90 -0.55 -0.02 16 14 C -0.09 -0.53 6.13 -91.77 -0.56 -1.10 16 15 C -0.17 -0.60 10.15 -26.73 -0.27 -0.87 16 16 C -0.16 -0.68 10.23 -26.73 -0.27 -0.95 16 17 C -0.09 -1.17 6.79 -39.31 -0.27 -1.44 16 18 Cl 0.00 -0.05 28.02 -51.86 -1.45 -1.50 16 19 C -0.15 -3.10 6.78 -24.58 -0.17 -3.27 16 20 C 0.17 4.27 5.42 -2.53 -0.01 4.25 16 21 N -0.59 -14.93 3.13 -162.57 -0.51 -15.44 16 22 C -0.23 -6.18 9.83 -15.06 -0.15 -6.33 16 23 H 0.08 2.01 7.85 -52.48 -0.41 1.59 16 24 C -0.01 -0.19 5.40 -17.44 -0.09 -0.28 16 25 N -0.92 -26.91 10.69 55.49 0.59 -26.31 16 26 Si 0.91 22.03 29.56 -169.99 -5.03 17.01 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.05 1.10 8.02 -51.93 -0.42 0.68 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.40 5.83 8.09 -40.82 -0.33 5.50 16 34 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.22 7.16 -51.93 -0.37 -0.15 16 36 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.93 6.94 -51.93 -0.36 1.57 16 42 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -32.85 372.47 -10.58 -43.43 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.12 Total: 1.83 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -3.12 Total: 2.04 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.44 Total: -58.55 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.45 Total: -1.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.85 -10.58 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088705122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.227 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds